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## R

raiseToButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
RAND_CHARS - Static variable in class info.bioinfweb.treegraph.document.IDManager
RAND_LENGTH - Static variable in class info.bioinfweb.treegraph.document.IDManager
read(File) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader
read(File, NodeDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader
read(File, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader
  If you want to implement file specific functionalities you should override this method.
read(InputStream, NodeDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader
read(InputStream) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader
read(InputStream) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader
read(File) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader
read(InputStream, NodeDataAdapter) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader
read(File, NodeDataAdapter) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader
read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader
read(File, NodeDataAdapter, TreeSelector, boolean) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader
read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickReader
read(File, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickReader
read(String) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
read(String, NodeDataAdapter) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
read(String, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusReader
read(File, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusReader
read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.tgf.TGFReader
read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
read(File, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readAnchor(StartElement, Legend, int) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readBranch(Vector<NewickToken>, int, int, Node, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
readBranch(StartElement, Branch) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readBranchLength(NewickToken, String, int) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickScanner
  Reads a length statement in an Newick string.
readBranchList(Vector<NewickToken>, int, int, Node, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
readDecimalFormat(TextFormats, StartElement, String) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readDelimitedName(String, int, NewickToken) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickScanner
readDistance(String, float) - Static method in class info.bioinfweb.treegraph.cmd.ImageGenerator
readDistanceDimensionAttr(DistanceDimension, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readDistanceValueAttr(DistanceValue, StartElement, QName) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readDocument(StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
reader - Variable in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readFreeName(String, int) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickScanner
readGlobalFormats(StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readGlobalLabelFormst(StartElement, GlobalFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readGlobalLegendFormst(StartElement, GlobalFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readHiddenData(StartElement, HiddenDataMap) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readInternal(Vector<NewickToken>, int, int, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
readLabel(StartElement, Labels) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readLeaf(Vector<NewickToken>, int, int, TranslTable) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
readLegend(StartElement, Legends) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readLineAttr(LineFormats, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readMarginAttr(Margin, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readName(Vector<NewickToken>, int, int, Node, NodeDataAdapter, TranslTable) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
readRes(String) - Static method in class info.bioinfweb.treegraph.cmd.ImageGenerator
readScaleBar(StartElement, ScaleBar) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readScaleValueAttr(ScaleValue, StartElement, QName) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readStream(InputStream) - Static method in class info.bioinfweb.treegraph.document.io.TextStreamReader
readSubtree(Vector<NewickToken>, int, int, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
readSubtree(StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readTextElementDataAttr(TextElementData, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readTextFormatsAttr(TextFormats, StartElement, String) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readTextStyleAttr(TextFormats, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
readTranslTable(NexusCommand, TranslTable) - Static method in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
readTree(Vector<NewickToken>, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
readTree(StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader
ReadWriteFactory - Class in info.bioinfweb.treegraph.document.io
ReadWriteFactory() - Constructor for class info.bioinfweb.treegraph.document.io.ReadWriteFactory
ReadWriteFactoryException - Exception in info.bioinfweb.treegraph.document.io
ReadWriteFactoryException() - Constructor for exception info.bioinfweb.treegraph.document.io.ReadWriteFactoryException
ReadWriteFactoryException(String, Throwable) - Constructor for exception info.bioinfweb.treegraph.document.io.ReadWriteFactoryException
ReadWriteFactoryException(String) - Constructor for exception info.bioinfweb.treegraph.document.io.ReadWriteFactoryException
ReadWriteFactoryException(Throwable) - Constructor for exception info.bioinfweb.treegraph.document.io.ReadWriteFactoryException
ReadWriteFormat - Enum in info.bioinfweb.treegraph.document.io
ReadWriteFormat() - Constructor for enum info.bioinfweb.treegraph.document.io.ReadWriteFormat
ReanchorLegendAction - Class in info.bioinfweb.treegraph.gui.actions.format
ReanchorLegendAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.ReanchorLegendAction
ReanchorLegendEdit - Class in info.bioinfweb.treegraph.document.undo.format
ReanchorLegendEdit(Document, Legend, String, String) - Constructor for class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit
RectangularCladogramFactory - Class in info.bioinfweb.treegraph.graphics.positionpaint
RectangularCladogramFactory() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramFactory
RectangularCladogramPainter - Class in info.bioinfweb.treegraph.graphics.positionpaint
RectangularCladogramPainter() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
RectangularCladogramPositioner - Class in info.bioinfweb.treegraph.graphics.positionpaint
RectangularCladogramPositioner() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
redFactor - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsFromNodeDataEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.AssignLabelIDsEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.BranchLengthEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.ChangeLabelIDEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLabelEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLegendEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertSiblingEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertSubtreeEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteAllLabelsEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteLabelEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteLegendEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteSubtreeEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveLabelEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveLegendEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveSubtreeEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.SeparateBranchEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.format.BranchWidthsFromNodeDataEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.format.ColorsFromNodeDataEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.format.GlobalFormatsEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit
redo() - Method in class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit
RedoAction - Class in info.bioinfweb.treegraph.gui.actions.edit
RedoAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.RedoAction
reduceLabelLineVectors() - Method in class info.bioinfweb.treegraph.document.Labels
refreshActionStatus() - Method in class info.bioinfweb.treegraph.gui.actions.ActionManagement
  Enables or disables all action objects by calling their `setEnabled(Document, TreeSelection)`-methods.
registerChange() - Method in class info.bioinfweb.treegraph.document.Document
registerChange() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
registerPositioner(PositionPaintType) - Method in class info.bioinfweb.treegraph.document.Document
reinsert() - Method in class info.bioinfweb.treegraph.document.format.LabelPositionFormats
  If this object has an owner-`Label` this is reinserted into its `Labels`-object.
reinsert() - Method in class info.bioinfweb.treegraph.document.Label
reinsert(Label) - Method in class info.bioinfweb.treegraph.document.Labels
reinsert() - Method in class info.bioinfweb.treegraph.document.Legend
reinsert(Legend) - Method in class info.bioinfweb.treegraph.document.Legends
  Reinserts a legend to ensure the correct order of the stored legends.
remove(Object) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
remove(Label) - Method in class info.bioinfweb.treegraph.document.LabelLine
remove(Label) - Method in class info.bioinfweb.treegraph.document.Labels
remove(Legend) - Method in class info.bioinfweb.treegraph.document.Legends
remove() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLabelEdit
remove() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLegendEdit
remove() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveSubtreeEdit
remove(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel
remove(ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
removeButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog
removeInputListener(NodeDataInputListener) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NewNodeDataInput
RemoveLabelEdit - Class in info.bioinfweb.treegraph.document.undo.edit
RemoveLabelEdit(Document, Label, Labels) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RemoveLabelEdit
RemoveLegendEdit - Class in info.bioinfweb.treegraph.document.undo.edit
RemoveLegendEdit(Document, Legend) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RemoveLegendEdit
RemoveSubtreeEdit - Class in info.bioinfweb.treegraph.document.undo.edit
RemoveSubtreeEdit(Document, Node, Node, int, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RemoveSubtreeEdit
removeTextStyle(int) - Method in class info.bioinfweb.treegraph.document.format.TextFormats
removeTreeViewListener(TreeViewPanelListener) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
removeView(DocumentView) - Method in class info.bioinfweb.treegraph.document.Document
rename(Node, List<String>, List<String>) - Method in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit
renameButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog
renameHiddenDataID(HiddenDataElement, String, String) - Static method in class info.bioinfweb.treegraph.document.IDManager
renameID(String, String, Node) - Static method in class info.bioinfweb.treegraph.document.IDManager
  Changes all accurences of the given ID in the subtree under root.
renameIDButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
renameIDDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
RenameIDDialog - Class in info.bioinfweb.treegraph.gui.dialogs
RenameIDDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog
RenameIDDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog
renameLabelIDInLabelBlock(String, String, Labels, boolean) - Static method in class info.bioinfweb.treegraph.document.IDManager
replace(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit
replaceButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
replaceButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog
replaceDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
replaceEdit(UndoableEdit) - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit
ReplaceInNodeDataAction - Class in info.bioinfweb.treegraph.gui.actions.edit
ReplaceInNodeDataAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction
ReplaceInNodeDataDialog - Class in info.bioinfweb.treegraph.gui.dialogs
ReplaceInNodeDataDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
ReplaceInNodeDataDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
ReplaceInNodeDataEdit - Class in info.bioinfweb.treegraph.document.undo.edit
ReplaceInNodeDataEdit(Document, NodeDataAdapter, ReplaceInNodeDataEdit.InsertPosition, String, String, boolean, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit
ReplaceInNodeDataEdit.InsertPosition - Enum in info.bioinfweb.treegraph.document.undo.edit
ReplaceInNodeDataEdit.InsertPosition() - Constructor for enum info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit.InsertPosition
replaceLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
replacePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
replaceRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
replaceTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
replaceTextLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
reroot(Branch) - Method in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit
RerootAction - Class in info.bioinfweb.treegraph.gui.actions.edit
RerootAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.RerootAction
RerootEdit - Class in info.bioinfweb.treegraph.document.undo.edit
RerootEdit(Document, Branch) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RerootEdit
rescale(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit
rescaleBranchWidth(Branch, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPositioner
  This method is overwritten to regard the stored branch lengths.
rescaleBranchWidth(Branch, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
  This methode can be overwritten by extending classes to define a different rescaling process.
RescaleCalculator - Class in info.bioinfweb.treegraph.gui.dialogs.datatable.math
RescaleCalculator(double, double, double, double) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.math.RescaleCalculator
rescaleColumn(int, NodeDataCalculator) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
RescaleNodeDataEdit - Class in info.bioinfweb.treegraph.document.undo.edit
RescaleNodeDataEdit(Document, NodeDataAdapter, double, double) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit
rescaleNodeWidth(Node, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPositioner
  This method is overwritten to ensure that no edge radius in painted.
rescaleNodeWidth(Node, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
  This methode can be overwritten by extending classes to define a different rescaling process.
rescaleSubtree(Node, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
  Rescales the subtree under root.
rescaleSubtree(Node, NodeDataAdapter, NodeDataCalculator) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
rescalingFactorX - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
reset() - Method in class info.bioinfweb.treegraph.document.Document
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
resetChangeMonitors() - Method in interface info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatTab
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel
resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
RESOLUTION_OPTION - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator
resolutionInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog
ResolutionInput - Class in info.bioinfweb.treegraph.gui.dialogs
ResolutionInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput
restoreLegends() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
restoreNames(Node, int) - Method in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit
right - Variable in class info.bioinfweb.treegraph.document.format.Margin
right - Variable in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
rightRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
root - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit
root - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveSubtreeEdit
root - Variable in class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit
root - Variable in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit
root - Variable in class info.bioinfweb.treegraph.document.undo.edit.PasteSubtreeEdit
ROOTED_COMMAND - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
rootingPoint - Variable in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit
RulerOrientation - Enum in info.bioinfweb.treegraph.gui.treeframe.ruler
RulerOrientation() - Constructor for enum info.bioinfweb.treegraph.gui.treeframe.ruler.RulerOrientation
RulerUnit - Enum in info.bioinfweb.treegraph.gui.treeframe.ruler
RulerUnit() - Constructor for enum info.bioinfweb.treegraph.gui.treeframe.ruler.RulerUnit
run() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

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