A B C D E F G H I J K L M N O P Q R S T U V W X Z

L

label - Variable in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard

Label - Class in info.bioinfweb.treegraph.document

Label is the acestor of the two label classes TextLabel and CharacterShiftLabel.

Label(Labels) - Constructor for class info.bioinfweb.treegraph.document.Label

label - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLabelEdit

label - Variable in class info.bioinfweb.treegraph.document.undo.edit.PasteLabelEdit

LABEL_DISTANCE - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

The distance of the labels to the border of the component

LABEL_LENGTH_STANDARD - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

This string is used to test if the interval between two main dashes is smaller than the usual label text.

LabelAboveOperator - Class in info.bioinfweb.treegraph.document.format.operate

LabelAboveOperator(boolean) - Constructor for class info.bioinfweb.treegraph.document.format.operate.LabelAboveOperator

LabelAdapter - Class in info.bioinfweb.treegraph.document.nodedata

LabelAdapter(String, DecimalFormat) - Constructor for class info.bioinfweb.treegraph.document.nodedata.LabelAdapter

labelBlockDistance - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

labelBlockDistanceInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

labelBlockMargin - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

labelBlockMarginInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

labelCount(boolean, int) - Method in class info.bioinfweb.treegraph.document.Labels

Returns the number of labels in the specified line.

labelFormats - Variable in class info.bioinfweb.treegraph.document.io.tgf.TGFReader

LabelIDComboBox - Class in info.bioinfweb.treegraph.gui.dialogs

LabelIDComboBox() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.LabelIDComboBox

labelIDLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog

labelIDPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog

labelingPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

LabelLine - Class in info.bioinfweb.treegraph.document

LabelLine() - Constructor for class info.bioinfweb.treegraph.document.LabelLine

LabelLineNumberOperator - Class in info.bioinfweb.treegraph.document.format.operate

LabelLineNumberOperator(int) - Constructor for class info.bioinfweb.treegraph.document.format.operate.LabelLineNumberOperator

LabelLinePositionOperator - Class in info.bioinfweb.treegraph.document.format.operate

LabelLinePositionOperator(int) - Constructor for class info.bioinfweb.treegraph.document.format.operate.LabelLinePositionOperator

labelLinesAbove - Variable in class info.bioinfweb.treegraph.document.Labels

labelLinesBelow - Variable in class info.bioinfweb.treegraph.document.Labels

labelList - Variable in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard

labelList - Variable in class info.bioinfweb.treegraph.document.undo.edit.PasteAllLabelsEdit

labelNumbersPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

LabelPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

LabelPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

This is the default constructor

LabelPositionFormats - Class in info.bioinfweb.treegraph.document.format

This class implements the formats necessary to position an label relative to others.

LabelPositionFormats(Label) - Constructor for class info.bioinfweb.treegraph.document.format.LabelPositionFormats

LabelPositionFormats(Label, boolean, int, int) - Constructor for class info.bioinfweb.treegraph.document.format.LabelPositionFormats

labelRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

labels - Variable in class info.bioinfweb.treegraph.document.Branch

labels - Variable in class info.bioinfweb.treegraph.document.Label

Labels - Class in info.bioinfweb.treegraph.document

This class stores the Labels of a Node and provides infomation about whole rows and columns.

Labels(Branch) - Constructor for class info.bioinfweb.treegraph.document.Labels

labels - Variable in class info.bioinfweb.treegraph.document.undo.edit.ChangeLabelIDEdit

ladderize(Node, boolean) - Method in class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit

LadderizeAction - Class in info.bioinfweb.treegraph.gui.actions.edit

LadderizeAction(MainFrame, boolean) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction

ladderizeDown - Variable in class info.bioinfweb.treegraph.document.NodeLadderizeComparable

LadderizeDownAction - Class in info.bioinfweb.treegraph.gui.actions.edit

LadderizeDownAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.LadderizeDownAction

LadderizeEdit - Class in info.bioinfweb.treegraph.document.undo.edit

This class ladderized a subtree.

LadderizeEdit(Document, Node, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit

LadderizeUpAction - Class in info.bioinfweb.treegraph.gui.actions.edit

LadderizeUpAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.LadderizeUpAction

lastSelection - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

Used to convert the width and height values if their unit is changed by the user.

LEAF_ADAPTER - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

leafFormats - Variable in class info.bioinfweb.treegraph.document.io.tgf.TGFReader

leafInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

leafLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

leafMargin - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

leafMarginInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

leafNames() - Method in class info.bioinfweb.treegraph.document.Node

left - Variable in class info.bioinfweb.treegraph.document.format.Margin

left - Variable in class info.bioinfweb.treegraph.document.PositionData

left - Variable in class info.bioinfweb.treegraph.gui.dialogs.MarginInput

leftRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

legend - Variable in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard

Legend - Class in info.bioinfweb.treegraph.document

Legend(Legends) - Constructor for class info.bioinfweb.treegraph.document.Legend

legend - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLegendEdit

legend - Variable in class info.bioinfweb.treegraph.document.undo.edit.PasteLegendEdit

legend - Variable in class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit

LegendFormats - Class in info.bioinfweb.treegraph.document.format

LegendFormats(Legend) - Constructor for class info.bioinfweb.treegraph.document.format.LegendFormats

legendMargin - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

legendMarginInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

legendNumbersPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

legendOrderLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

legendOrientationPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

LegendPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

LegendPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

This is the default constructor

legendPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

LegendPositionData - Class in info.bioinfweb.treegraph.document

LegendPositionData() - Constructor for class info.bioinfweb.treegraph.document.LegendPositionData

legendPositionMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

LegendPositionOperator - Class in info.bioinfweb.treegraph.document.format.operate

LegendPositionOperator(int) - Constructor for class info.bioinfweb.treegraph.document.format.operate.LegendPositionOperator

legendPositionTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

legendPresent - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

legends - Variable in class info.bioinfweb.treegraph.document.Legend

Legends - Class in info.bioinfweb.treegraph.document

Legends(Tree) - Constructor for class info.bioinfweb.treegraph.document.Legends

legends - Variable in class info.bioinfweb.treegraph.document.Tree

legendSpacing - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

legendSpacingInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

legendsReanchored - Variable in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

legendsRemoved - Variable in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

legendsSave - Variable in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

legendStyle - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats

LegendStyle - Enum in info.bioinfweb.treegraph.document.format

LegendStyle() - Constructor for enum info.bioinfweb.treegraph.document.format.LegendStyle

LegendStyleOperator - Class in info.bioinfweb.treegraph.document.format.operate

LegendStyleOperator(LegendStyle) - Constructor for class info.bioinfweb.treegraph.document.format.operate.LegendStyleOperator

legendStylePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

length - Variable in class info.bioinfweb.treegraph.document.Branch

length - Variable in class info.bioinfweb.treegraph.document.format.operate.MinLengthOperator

length - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken

LENGTH_SEPERATOR - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

licenceLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

line - Variable in class info.bioinfweb.treegraph.document.LabelLine

lineColor - Variable in class info.bioinfweb.treegraph.document.format.BranchFormats

lineColor - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats

lineColor - Variable in class info.bioinfweb.treegraph.document.format.LineFormatsEntity

lineColor - Variable in class info.bioinfweb.treegraph.document.format.NodeFormats

lineColor - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

LineColorOperator - Class in info.bioinfweb.treegraph.document.format.operate

LineColorOperator(Color) - Constructor for class info.bioinfweb.treegraph.document.format.operate.LineColorOperator

lineColorPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

lineCount(boolean) - Method in class info.bioinfweb.treegraph.document.Labels

lineDescent(boolean, int) - Method in class info.bioinfweb.treegraph.document.Labels

LineElement - Interface in info.bioinfweb.treegraph.document

LineFormats - Interface in info.bioinfweb.treegraph.document.format

LineFormatsEntity - Class in info.bioinfweb.treegraph.document.format

LineFormatsEntity() - Constructor for class info.bioinfweb.treegraph.document.format.LineFormatsEntity

lineHeight(PositionPaintType, boolean, int) - Method in class info.bioinfweb.treegraph.document.Labels

lineNoLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

lineNoMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

lineNoTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

lineNumber - Variable in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

lineNumber - Variable in class info.bioinfweb.treegraph.document.format.operate.LabelLineNumberOperator

LinePanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

LinePanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

This is the default constructor

linePosition - Variable in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

linePosition - Variable in class info.bioinfweb.treegraph.document.format.operate.LabelLinePositionOperator

linePosLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

linePosMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

linePosTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

lineWidth - Variable in class info.bioinfweb.treegraph.document.format.BranchFormats

lineWidth - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats

lineWidth - Variable in class info.bioinfweb.treegraph.document.format.LineFormatsEntity

lineWidth - Variable in class info.bioinfweb.treegraph.document.format.NodeFormats

lineWidth - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

lineWidth - Variable in class info.bioinfweb.treegraph.document.io.tgf.TGFReader

lineWidth(PositionPaintType, boolean, int, float) - Method in class info.bioinfweb.treegraph.document.Labels

Returns the width of the specified line

lineWidthInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

LineWidthOperator - Class in info.bioinfweb.treegraph.document.format.operate

LineWidthOperator(DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.operate.LineWidthOperator

list - Variable in class info.bioinfweb.treegraph.document.Legends

list - Variable in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.LeafList

loadIcons() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

loadNameTable(File, Vector<String>, Vector<String>, char) - Static method in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit

loadNameTable(InputStream, Vector<String>, Vector<String>, char) - Static method in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit

loadSymbols(String) - Method in class info.bioinfweb.treegraph.gui.actions.TreeGraphAction

locale - Variable in class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator

locale - Variable in class info.bioinfweb.treegraph.document.format.TextFormats

localeComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

localeLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

LogCalculator - Class in info.bioinfweb.treegraph.gui.dialogs.datatable.math

LogCalculator(double) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.math.LogCalculator

logValuesButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

longInterval - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

longIntervalInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

lowerToolBar - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel