A B C D E F G H I J K L M N O P Q R S T U V W X Z

R

raiseToButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

RAND_CHARS - Static variable in class info.bioinfweb.treegraph.document.IDManager

RAND_LENGTH - Static variable in class info.bioinfweb.treegraph.document.IDManager

read(File) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader

read(File, NodeDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader

read(File, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader

If you want to implement file specific functionalities you should override this method.

read(InputStream, NodeDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader

read(InputStream) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader

read(InputStream) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader

read(File) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader

read(InputStream, NodeDataAdapter) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader

read(File, NodeDataAdapter) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader

read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader

read(File, NodeDataAdapter, TreeSelector, boolean) - Method in interface info.bioinfweb.treegraph.document.io.DocumentReader

read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickReader

read(File, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickReader

read(String) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

read(String, NodeDataAdapter) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

read(String, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusReader

read(File, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusReader

read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.tgf.TGFReader

read(InputStream, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

read(File, NodeDataAdapter, TreeSelector, boolean) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readAnchor(StartElement, Legend, int) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readBranch(Vector<NewickToken>, int, int, Node, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

readBranch(StartElement, Branch) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readBranchLength(NewickToken, String, int) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickScanner

Reads a length statement in an Newick string.

readBranchList(Vector<NewickToken>, int, int, Node, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

readDecimalFormat(TextFormats, StartElement, String) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readDelimitedName(String, int, NewickToken) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickScanner

readDistance(String, float) - Static method in class info.bioinfweb.treegraph.cmd.ImageGenerator

readDistanceDimensionAttr(DistanceDimension, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readDistanceValueAttr(DistanceValue, StartElement, QName) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readDocument(StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

reader - Variable in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readFreeName(String, int) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickScanner

readGlobalFormats(StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readGlobalLabelFormst(StartElement, GlobalFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readGlobalLegendFormst(StartElement, GlobalFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readHiddenData(StartElement, HiddenDataMap) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readInternal(Vector<NewickToken>, int, int, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

readLabel(StartElement, Labels) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readLeaf(Vector<NewickToken>, int, int, TranslTable) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

readLegend(StartElement, Legends) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readLineAttr(LineFormats, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readMarginAttr(Margin, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readName(Vector<NewickToken>, int, int, Node, NodeDataAdapter, TranslTable) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

readRes(String) - Static method in class info.bioinfweb.treegraph.cmd.ImageGenerator

readScaleBar(StartElement, ScaleBar) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readScaleValueAttr(ScaleValue, StartElement, QName) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readStream(InputStream) - Static method in class info.bioinfweb.treegraph.document.io.TextStreamReader

readSubtree(Vector<NewickToken>, int, int, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

readSubtree(StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readTextElementDataAttr(TextElementData, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readTextFormatsAttr(TextFormats, StartElement, String) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readTextStyleAttr(TextFormats, StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

readTranslTable(NexusCommand, TranslTable) - Static method in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

readTree(Vector<NewickToken>, NodeDataAdapter, TranslTable, boolean) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

readTree(StartElement) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGReader

ReadWriteFactory - Class in info.bioinfweb.treegraph.document.io

ReadWriteFactory() - Constructor for class info.bioinfweb.treegraph.document.io.ReadWriteFactory

ReadWriteFactoryException - Exception in info.bioinfweb.treegraph.document.io

ReadWriteFactoryException() - Constructor for exception info.bioinfweb.treegraph.document.io.ReadWriteFactoryException

ReadWriteFactoryException(String, Throwable) - Constructor for exception info.bioinfweb.treegraph.document.io.ReadWriteFactoryException

ReadWriteFactoryException(String) - Constructor for exception info.bioinfweb.treegraph.document.io.ReadWriteFactoryException

ReadWriteFactoryException(Throwable) - Constructor for exception info.bioinfweb.treegraph.document.io.ReadWriteFactoryException

ReadWriteFormat - Enum in info.bioinfweb.treegraph.document.io

ReadWriteFormat() - Constructor for enum info.bioinfweb.treegraph.document.io.ReadWriteFormat

ReanchorLegendAction - Class in info.bioinfweb.treegraph.gui.actions.format

ReanchorLegendAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.ReanchorLegendAction

ReanchorLegendEdit - Class in info.bioinfweb.treegraph.document.undo.format

ReanchorLegendEdit(Document, Legend, String, String) - Constructor for class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit

RectangularCladogramFactory - Class in info.bioinfweb.treegraph.graphics.positionpaint

RectangularCladogramFactory() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramFactory

RectangularCladogramPainter - Class in info.bioinfweb.treegraph.graphics.positionpaint

RectangularCladogramPainter() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

RectangularCladogramPositioner - Class in info.bioinfweb.treegraph.graphics.positionpaint

RectangularCladogramPositioner() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

redFactor - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsFromNodeDataEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.AssignLabelIDsEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.BranchLengthEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.ChangeLabelIDEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLabelEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLegendEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertSiblingEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertSubtreeEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteAllLabelsEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteLabelEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteLegendEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteSubtreeEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveLabelEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveLegendEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveSubtreeEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.SeparateBranchEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.format.BranchWidthsFromNodeDataEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.format.ColorsFromNodeDataEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.format.GlobalFormatsEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit

redo() - Method in class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit

RedoAction - Class in info.bioinfweb.treegraph.gui.actions.edit

RedoAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.RedoAction

reduceLabelLineVectors() - Method in class info.bioinfweb.treegraph.document.Labels

refreshActionStatus() - Method in class info.bioinfweb.treegraph.gui.actions.ActionManagement

Enables or disables all action objects by calling their setEnabled(Document, TreeSelection)-methods.

registerChange() - Method in class info.bioinfweb.treegraph.document.Document

registerChange() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

registerPositioner(PositionPaintType) - Method in class info.bioinfweb.treegraph.document.Document

reinsert() - Method in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

If this object has an owner-Label this is reinserted into its Labels-object.

reinsert() - Method in class info.bioinfweb.treegraph.document.Label

reinsert(Label) - Method in class info.bioinfweb.treegraph.document.Labels

reinsert() - Method in class info.bioinfweb.treegraph.document.Legend

reinsert(Legend) - Method in class info.bioinfweb.treegraph.document.Legends

Reinserts a legend to ensure the correct order of the stored legends.

remove(Object) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

remove(Label) - Method in class info.bioinfweb.treegraph.document.LabelLine

remove(Label) - Method in class info.bioinfweb.treegraph.document.Labels

remove(Legend) - Method in class info.bioinfweb.treegraph.document.Legends

remove() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLabelEdit

remove() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLegendEdit

remove() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveSubtreeEdit

remove(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel

remove(ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

removeButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

removeInputListener(NodeDataInputListener) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NewNodeDataInput

RemoveLabelEdit - Class in info.bioinfweb.treegraph.document.undo.edit

RemoveLabelEdit(Document, Label, Labels) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RemoveLabelEdit

RemoveLegendEdit - Class in info.bioinfweb.treegraph.document.undo.edit

RemoveLegendEdit(Document, Legend) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RemoveLegendEdit

RemoveSubtreeEdit - Class in info.bioinfweb.treegraph.document.undo.edit

RemoveSubtreeEdit(Document, Node, Node, int, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RemoveSubtreeEdit

removeTextStyle(int) - Method in class info.bioinfweb.treegraph.document.format.TextFormats

removeTreeViewListener(TreeViewPanelListener) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

removeView(DocumentView) - Method in class info.bioinfweb.treegraph.document.Document

rename(Node, List<String>, List<String>) - Method in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit

renameButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog

renameHiddenDataID(HiddenDataElement, String, String) - Static method in class info.bioinfweb.treegraph.document.IDManager

renameID(String, String, Node) - Static method in class info.bioinfweb.treegraph.document.IDManager

Changes all accurences of the given ID in the subtree under root.

renameIDButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

renameIDDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

RenameIDDialog - Class in info.bioinfweb.treegraph.gui.dialogs

RenameIDDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog

RenameIDDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog

renameLabelIDInLabelBlock(String, String, Labels, boolean) - Static method in class info.bioinfweb.treegraph.document.IDManager

replace(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit

replaceButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

replaceButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

replaceDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

replaceEdit(UndoableEdit) - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit

ReplaceInNodeDataAction - Class in info.bioinfweb.treegraph.gui.actions.edit

ReplaceInNodeDataAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction

ReplaceInNodeDataDialog - Class in info.bioinfweb.treegraph.gui.dialogs

ReplaceInNodeDataDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

ReplaceInNodeDataDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

ReplaceInNodeDataEdit - Class in info.bioinfweb.treegraph.document.undo.edit

ReplaceInNodeDataEdit(Document, NodeDataAdapter, ReplaceInNodeDataEdit.InsertPosition, String, String, boolean, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit

ReplaceInNodeDataEdit.InsertPosition - Enum in info.bioinfweb.treegraph.document.undo.edit

ReplaceInNodeDataEdit.InsertPosition() - Constructor for enum info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit.InsertPosition

replaceLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

replacePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

replaceRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

replaceTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

replaceTextLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

reroot(Branch) - Method in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit

RerootAction - Class in info.bioinfweb.treegraph.gui.actions.edit

RerootAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.RerootAction

RerootEdit - Class in info.bioinfweb.treegraph.document.undo.edit

RerootEdit(Document, Branch) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RerootEdit

rescale(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit

rescaleBranchWidth(Branch, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPositioner

This method is overwritten to regard the stored branch lengths.

rescaleBranchWidth(Branch, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

This methode can be overwritten by extending classes to define a different rescaling process.

RescaleCalculator - Class in info.bioinfweb.treegraph.gui.dialogs.datatable.math

RescaleCalculator(double, double, double, double) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.math.RescaleCalculator

rescaleColumn(int, NodeDataCalculator) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

RescaleNodeDataEdit - Class in info.bioinfweb.treegraph.document.undo.edit

RescaleNodeDataEdit(Document, NodeDataAdapter, double, double) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit

rescaleNodeWidth(Node, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPositioner

This method is overwritten to ensure that no edge radius in painted.

rescaleNodeWidth(Node, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

This methode can be overwritten by extending classes to define a different rescaling process.

rescaleSubtree(Node, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

Rescales the subtree under root.

rescaleSubtree(Node, NodeDataAdapter, NodeDataCalculator) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

rescalingFactorX - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

reset() - Method in class info.bioinfweb.treegraph.document.Document

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog

resetChangeMonitors() - Method in interface info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatTab

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

resetChangeMonitors() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

RESOLUTION_OPTION - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator

resolutionInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

ResolutionInput - Class in info.bioinfweb.treegraph.gui.dialogs

ResolutionInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput

restoreLegends() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

restoreNames(Node, int) - Method in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit

right - Variable in class info.bioinfweb.treegraph.document.format.Margin

right - Variable in class info.bioinfweb.treegraph.gui.dialogs.MarginInput

rightRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

root - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit

root - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveSubtreeEdit

root - Variable in class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit

root - Variable in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit

root - Variable in class info.bioinfweb.treegraph.document.undo.edit.PasteSubtreeEdit

ROOTED_COMMAND - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

rootingPoint - Variable in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit

RulerOrientation - Enum in info.bioinfweb.treegraph.gui.treeframe.ruler

RulerOrientation() - Constructor for enum info.bioinfweb.treegraph.gui.treeframe.ruler.RulerOrientation

RulerUnit - Enum in info.bioinfweb.treegraph.gui.treeframe.ruler

RulerUnit() - Constructor for enum info.bioinfweb.treegraph.gui.treeframe.ruler.RulerUnit

run() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame