A B C D E F G H I J K L M N O P Q R S T U V W X Z

T

table - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

table - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

tableScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

tableScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

tableScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

tabRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

tabs - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog

TAG_BRANCH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_CHAR_SHIFT_LABEL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_DOC_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_GLOBAL_FORMATS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_GLOBAL_LABEL_FORMATS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_GLOBAL_LEGEND_FORMATS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_HIDDEN_DATA - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_LABEL_BLOCK_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_LEAF_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_LEGEND - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_LEGEND_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_MIN_DOC_DIM - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_NODE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_NODE_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_ROOT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_SCALE_BAR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_TEXT_LABEL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

TAG_TREE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

targetNode - Variable in class info.bioinfweb.treegraph.document.Branch

targetTypePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

TERMINAL_SYMBOL - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

terminalDataInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

terminalsAdapter - Variable in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

terminalsLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

terminalsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

text - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken

TEXT - Static variable in class info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction

TEXT_CENTIMETER - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField

TEXT_INCH - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField

textColor - Variable in class info.bioinfweb.treegraph.document.format.TextFormats

TextColorOperator - Class in info.bioinfweb.treegraph.document.format.operate

TextColorOperator(Color) - Constructor for class info.bioinfweb.treegraph.document.format.operate.TextColorOperator

TextElement - Class in info.bioinfweb.treegraph.document

TextElement() - Constructor for class info.bioinfweb.treegraph.document.TextElement

textElement - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

TextElementData - Class in info.bioinfweb.treegraph.document

This class is used to store data of tree elements which can either be a string or a decimal value.

TextElementData() - Constructor for class info.bioinfweb.treegraph.document.TextElementData

TextElementData(String) - Constructor for class info.bioinfweb.treegraph.document.TextElementData

TextElementData(double) - Constructor for class info.bioinfweb.treegraph.document.TextElementData

TextElementDataAdapter - Class in info.bioinfweb.treegraph.document.nodedata

This abstract class implements basic funktionalities for adapters that deal with data stored in a TextElementData-object.

TextElementDataAdapter() - Constructor for class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter

TextElementEdit - Class in info.bioinfweb.treegraph.document.undo.edit

TextElementEdit(Document, TextElement, TextElementData) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit

textField - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NewNodeDataInput

TextFormats - Class in info.bioinfweb.treegraph.document.format

TextFormats() - Constructor for class info.bioinfweb.treegraph.document.format.TextFormats

textHeight - Variable in class info.bioinfweb.treegraph.document.format.operate.TextHeightOperator

textHeight - Variable in class info.bioinfweb.treegraph.document.format.TextFormats

TextHeightOperator - Class in info.bioinfweb.treegraph.document.format.operate

TextHeightOperator(DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.operate.TextHeightOperator

TextLabel - Class in info.bioinfweb.treegraph.document

TextLabel(Labels) - Constructor for class info.bioinfweb.treegraph.document.TextLabel

textLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

TextLabelFormats - Class in info.bioinfweb.treegraph.document.format

TextLabelFormats(Label) - Constructor for class info.bioinfweb.treegraph.document.format.TextLabelFormats

TextLabelFormats(Label, boolean, int, int) - Constructor for class info.bioinfweb.treegraph.document.format.TextLabelFormats

textLabelPresent - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

TextOrientation - Enum in info.bioinfweb.treegraph.document.format

TextOrientation() - Constructor for enum info.bioinfweb.treegraph.document.format.TextOrientation

TextOrientationOperator - Class in info.bioinfweb.treegraph.document.format.operate

TextOrientationOperator(TextOrientation) - Constructor for class info.bioinfweb.treegraph.document.format.operate.TextOrientationOperator

textPos - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken

textPos - Variable in class info.bioinfweb.treegraph.document.LegendPositionData

TextStreamReader - Class in info.bioinfweb.treegraph.document.io

TextStreamReader() - Constructor for class info.bioinfweb.treegraph.document.io.TextStreamReader

textStyle - Variable in class info.bioinfweb.treegraph.document.format.TextFormats

TextStyleOperator - Class in info.bioinfweb.treegraph.document.format.operate

TextStyleOperator(boolean, int) - Constructor for class info.bioinfweb.treegraph.document.format.operate.TextStyleOperator

TGFFactory - Class in info.bioinfweb.treegraph.document.io.tgf

TGFFactory() - Constructor for class info.bioinfweb.treegraph.document.io.tgf.TGFFactory

TGFFilter - Class in info.bioinfweb.treegraph.document.io.tgf

TGFFilter() - Constructor for class info.bioinfweb.treegraph.document.io.tgf.TGFFilter

TGFReader - Class in info.bioinfweb.treegraph.document.io.tgf

TGFReader() - Constructor for class info.bioinfweb.treegraph.document.io.tgf.TGFReader

TIFFFactory - Class in info.bioinfweb.treegraph.graphics.export.tiff

TIFFFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFactory

TIFFFilter - Class in info.bioinfweb.treegraph.graphics.export.tiff

TIFFFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter

TIFFPrefPanel - Class in info.bioinfweb.treegraph.gui.dialogs.exporttographic

TIFFPrefPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TIFFPrefPanel

TIFFWriter - Class in info.bioinfweb.treegraph.graphics.export.tiff

TIFFWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.tiff.TIFFWriter

TileHorizontalAction - Class in info.bioinfweb.treegraph.gui.actions.window

TileHorizontalAction() - Constructor for class info.bioinfweb.treegraph.gui.actions.window.TileHorizontalAction

tileInternalFramesHorizontal() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

tileInternalFramesVertical() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

TileVerticalAction - Class in info.bioinfweb.treegraph.gui.actions.window

TileVerticalAction() - Constructor for class info.bioinfweb.treegraph.gui.actions.window.TileVerticalAction

title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

title() - Method in interface info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatTab

title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel

title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

titleLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.MarginInput

toArray() - Method in class info.bioinfweb.treegraph.document.format.operate.OperatorMap

toArray(T[]) - Method in class info.bioinfweb.treegraph.document.Legends

toArray(T[]) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

tokens - Variable in class info.bioinfweb.treegraph.document.io.nexus.NexusCommand

TokenType - Enum in info.bioinfweb.treegraph.document.io.newick

TokenType() - Constructor for enum info.bioinfweb.treegraph.document.io.newick.TokenType

toolBarPanel - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

ToolBarPanel - Class in info.bioinfweb.treegraph.gui.mainframe

ToolBarPanel(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel

ToolBarPanel.ToolBarOrientation - Enum in info.bioinfweb.treegraph.gui.mainframe

ToolBarPanel.ToolBarOrientation() - Constructor for enum info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel.ToolBarOrientation

top - Variable in class info.bioinfweb.treegraph.document.format.Margin

top - Variable in class info.bioinfweb.treegraph.document.PositionData

top - Variable in class info.bioinfweb.treegraph.gui.dialogs.MarginInput

topic - Variable in class info.bioinfweb.treegraph.gui.actions.help.HelpTopicAction

toRect(float) - Method in class info.bioinfweb.treegraph.document.PositionData

toString() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

toString() - Method in enum info.bioinfweb.treegraph.document.io.newick.TokenType

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.BranchLengthAdapter

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.HiddenBranchDataAdapter

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.HiddenNodeDataAdapter

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.LabelAdapter

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.NewHiddenBranchDataAdapter

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.NewHiddenNodeDataAdapter

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.NewLabelAdapter

toString() - Method in interface info.bioinfweb.treegraph.document.nodedata.NodeDataAdapter

A description of the adapter that is readable by the user should be returned here.

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.NodeNameAdapter

toString() - Method in class info.bioinfweb.treegraph.document.nodedata.UniqueNameAdapter

toString() - Method in class info.bioinfweb.treegraph.document.PositionData

toString() - Method in class info.bioinfweb.treegraph.document.TextElement

toString() - Method in class info.bioinfweb.treegraph.document.TextElementData

Returns either the stored string, the decimal value as a sting or null if the object is empty.

transcoderClass - Variable in class info.bioinfweb.treegraph.graphics.export.SVGTranscodeWriter

TRANSL_TABLE_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

TRANSL_TABLE_SEPARATOR_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

translateInternalNodesCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

translateInternals - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

translateInternalsCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

translTable - Variable in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument

TranslTable - Class in info.bioinfweb.treegraph.document.io.nexus

Stores the content of a taxon table in a nexus document.

TranslTable() - Constructor for class info.bioinfweb.treegraph.document.io.nexus.TranslTable

translTable - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

TransparenrtBgPrefPanel - Class in info.bioinfweb.treegraph.gui.dialogs.exporttographic

TransparenrtBgPrefPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TransparenrtBgPrefPanel

This is the default constructor

transparentCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TransparenrtBgPrefPanel

tree - Variable in class info.bioinfweb.treegraph.document.Document

tree - Variable in class info.bioinfweb.treegraph.document.Legends

Tree - Class in info.bioinfweb.treegraph.document

Intances of this class provide an enviroment for the rcursive data-structure of tree-elements without their formats.

Tree() - Constructor for class info.bioinfweb.treegraph.document.Tree

TREE_COMMAND - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

TREE_COMMAND_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

TreeClipboard - Class in info.bioinfweb.treegraph.document.clipboard

This class is a clipboard for tree elements.

TreeClipboard() - Constructor for class info.bioinfweb.treegraph.document.clipboard.TreeClipboard

TreeClipboardException - Exception in info.bioinfweb.treegraph.document.clipboard

TreeClipboardException() - Constructor for exception info.bioinfweb.treegraph.document.clipboard.TreeClipboardException

TreeClipboardException(String, Throwable) - Constructor for exception info.bioinfweb.treegraph.document.clipboard.TreeClipboardException

TreeClipboardException(String) - Constructor for exception info.bioinfweb.treegraph.document.clipboard.TreeClipboardException

TreeClipboardException(Throwable) - Constructor for exception info.bioinfweb.treegraph.document.clipboard.TreeClipboardException

treeComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

treeDistance - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

treeDistanceInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

TreeEditlInputListener - Class in info.bioinfweb.treegraph.gui.treeframe

This listener implements the reactions to user inputs for editing the tree in a tree window.

TreeEditlInputListener() - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener

TreeEditlInputListener(TreeViewPanel) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener

TreeGraphAction - Class in info.bioinfweb.treegraph.gui.actions

TreeGraphAction() - Constructor for class info.bioinfweb.treegraph.gui.actions.TreeGraphAction

TreeInternalFrame - Class in info.bioinfweb.treegraph.gui.treeframe

TreeInternalFrame(Document) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

This is the xxx default constructor

TreePainter - Interface in info.bioinfweb.treegraph.graphics.positionpaint

TreePath - Class in info.bioinfweb.treegraph.document

This class stores the path to an node from the root of the tree.

TreePath(Node) - Constructor for class info.bioinfweb.treegraph.document.TreePath

TreePositioner - Interface in info.bioinfweb.treegraph.graphics.positionpaint

trees - Variable in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument

trees - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

TREES_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

treeScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

TreeSelection - Class in info.bioinfweb.treegraph.gui.treeframe

This class manages the selection of multiple elements in an tree view panel.

TreeSelection(TreeViewPanel) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

TreeSelectionDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io

TreeSelectionDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

TreeSelector - Interface in info.bioinfweb.treegraph.document.io

TreeSerializer - Class in info.bioinfweb.treegraph.document

TreeSerializer() - Constructor for class info.bioinfweb.treegraph.document.TreeSerializer

treesToArray() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument

treeViewInputListener - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

treeViewListeners - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

treeViewPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

treeViewPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

treeViewPanel - Variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

treeViewPanel - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

TreeViewPanel - Class in info.bioinfweb.treegraph.gui.treeframe

Shows the tree saved in the associated document in a swing GUI.

TreeViewPanel() - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

TreeViewPanel(Document) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

Creates a new swing-panel which shows the tree contained in document.

TreeViewPanelListener - Interface in info.bioinfweb.treegraph.gui.treeframe

TreeViewRuler - Class in info.bioinfweb.treegraph.gui.treeframe.ruler

TreeViewRuler(RulerOrientation, TreeViewPanel) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

TreeViewRulerConstants - Interface in info.bioinfweb.treegraph.gui.treeframe.ruler

TreeViewRulerUnitField - Class in info.bioinfweb.treegraph.gui.treeframe.ruler

TreeViewRulerUnitField(TreeViewRuler, TreeViewRuler) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField

treeWidthRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

type - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken

type - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

type - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

type - Variable in class info.bioinfweb.treegraph.gui.actions.view.ChangePainterIDAction

typeLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog