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edgeRadius - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats

edgeRadius - Variable in class info.bioinfweb.treegraph.document.format.NodeFormats

edgeRadius - Variable in class info.bioinfweb.treegraph.document.format.operate.EdgeRadiusOperator

edgeRadius - Variable in class info.bioinfweb.treegraph.document.io.tgf.TGFReader

EdgeRadiusElement - Interface in info.bioinfweb.treegraph.document

EdgeRadiusFormats - Interface in info.bioinfweb.treegraph.document.format

edgeRadiusInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

EdgeRadiusOperator - Class in info.bioinfweb.treegraph.document.format.operate

EdgeRadiusOperator(DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.operate.EdgeRadiusOperator

EditBranchLengthAction - Class in info.bioinfweb.treegraph.gui.actions.edit

EditBranchLengthAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditBranchLengthAction

EditBranchLengthDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement

EditBranchLengthDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog

EditBranchNodeDataAction - Class in info.bioinfweb.treegraph.gui.actions.edit

EditBranchNodeDataAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditBranchNodeDataAction

editButtonsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

EditDialog - Class in info.bioinfweb.treegraph.gui.dialogs

EditDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.EditDialog

EditDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.EditDialog

EditDialogAction - Class in info.bioinfweb.treegraph.gui.actions

EditDialogAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.EditDialogAction

EditElementFormatsAction - Class in info.bioinfweb.treegraph.gui.actions.format

EditElementFormatsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.EditElementFormatsAction

editFormatsGBC - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel

EditGlobalFormatsAction - Class in info.bioinfweb.treegraph.gui.actions.format

EditGlobalFormatsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.EditGlobalFormatsAction

editLegends() - Method in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit

editMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

EditNodeBranchDataEdit - Class in info.bioinfweb.treegraph.document.undo.edit

EditNodeBranchDataEdit(Document, Node) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit

edits - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

editSubtreeLegends(Node) - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

This method can be used to adopt the legends of a document prior to deleting a subtree.

EditTextElementAction - Class in info.bioinfweb.treegraph.gui.actions.edit

EditTextElementAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditTextElementAction

EditTextElementDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement

EditTextElementDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog

element - Variable in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit

ELEMENT_SEPERATOR - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

ElementFormats - Interface in info.bioinfweb.treegraph.document.format

ElementFormatsDialog - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

ElementFormatsDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog

ElementFormatTab - Interface in info.bioinfweb.treegraph.gui.dialogs.elementformats

elements - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

elements - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

elementToPosition(Document, float, float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

Determines the element to a position defined by x- and y-coordinates (e.g. to select an element by mouse).

elementToPosition(Document, float, float, float) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.TreePositioner

Return the SelectableElement of the tree in which the given coordinates are located.

EMFFactory - Class in info.bioinfweb.treegraph.graphics.export.emf

EMFFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFFactory

EMFFilter - Class in info.bioinfweb.treegraph.graphics.export.emf

EMFFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter

EMFWriter - Class in info.bioinfweb.treegraph.graphics.export.emf

EMFWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFWriter

EMPTY_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

ENCLOSED_NAME_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

encloseSubnodes(Node, boolean) - Static method in class info.bioinfweb.treegraph.document.NodeLadderizeComparable

Encloses all direct subelements of root with a NodeLadderizeComparable- object and adds this objects to an array that is returned.

endRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

entries - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel

entrySet() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

equals(Object) - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension

equals(Object) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue

equals(Object) - Method in class info.bioinfweb.treegraph.document.format.Margin

equals(Object) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

error - Variable in exception info.bioinfweb.treegraph.document.io.nexus.NexusException

ERROR_URL - Static variable in class info.bioinfweb.treegraph.Main

errorReporter - Variable in class info.bioinfweb.treegraph.Main

examplePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

execute(int, Tree) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog

execute(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog

execute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

execute(DistanceValue, DistanceValue, float) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

execute(Document) - Method in class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog

executeDialog(EditDialog) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

executeEdit(DocumentEdit) - Method in class info.bioinfweb.treegraph.document.Document

ExitAction - Class in info.bioinfweb.treegraph.gui.actions.file

ExitAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExitAction

ExpCalculator - Class in info.bioinfweb.treegraph.gui.dialogs.datatable.math

ExpCalculator(double) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.math.ExpCalculator

exponent - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.math.PowerCalculator

EXPORT_FILE_EXT - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

exportButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

exportDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

ExportNodeDataDialog - Class in info.bioinfweb.treegraph.gui.dialogs.datatable

ExportNodeDataDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

ExportNodeDataTableModel - Class in info.bioinfweb.treegraph.gui.dialogs.datatable

ExportNodeDataTableModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel

ExportToGraphicAction - Class in info.bioinfweb.treegraph.gui.actions.file

ExportToGraphicAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction

ExportToGraphicDialog - Class in info.bioinfweb.treegraph.gui.dialogs.exporttographic

ExportToGraphicDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

ExportToNewickNexusAction - Class in info.bioinfweb.treegraph.gui.actions.file

ExportToNewickNexusAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToNewickNexusAction

ExportToNewickStringDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io

ExportToNewickStringDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

expValuesButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.tgf.TGFFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.xtg.XTGFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.png.PNGFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.svg.SVGFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter

EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickFilter

EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusFilter

EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.SupportedFormatsFilter