info.bioinfweb.treegraph.document
Class IDManager

java.lang.Object
  info.bioinfweb.treegraph.document.IDManager

public class IDManager
extends java.lang.Object

Field Summary

static java.lang.String	RAND_CHARS
static int	RAND_LENGTH

Constructor Summary

IDManager()

Method Summary

static Label	getFirstLabel(Node root, java.lang.String id)
static java.lang.String[]	getHiddenBranchDataIDs(Node root) Searches for all the IDs of hidden data that is assigned to a branch present in the subtree under root.
static java.util.Vector<java.lang.String>	getHiddenBranchDataIDVector(Node root)
static java.lang.String[]	getHiddenNodeDataIDs(Node root) Searches for all the IDs of hidden data that is assigned to a node present in the subtree under root.
static java.util.Vector<java.lang.String>	getHiddenNodeDataIDVector(Node root)
static java.lang.String[]	getIDs(Node root) Searches for all IDs (hidden data and label IDs) present in the subtree under root.
static java.util.Vector<java.lang.String>	getIDVector(Node root) Searches for all IDs present in the subtree under root.
static java.lang.String[]	getLabelIDs(Node root) Searches for all label IDs present in the subtree under root.
static java.util.Vector<java.lang.String>	getLabelIDVector(Node root)
private static java.util.Vector<java.lang.String>	getVector(Node root, boolean includeLabels, boolean includeNodeHiddenData, boolean includeBranchHiddenData)
static boolean	idExists(Node root, java.lang.String id)
static java.lang.String	newID(java.util.Vector<java.lang.String> ids)
private static void	renameHiddenDataID(HiddenDataElement element, java.lang.String oldName, java.lang.String newName)
static void	renameID(java.lang.String oldName, java.lang.String newName, Node root) Changes all accurences of the given ID in the subtree under root.
private static void	renameLabelIDInLabelBlock(java.lang.String oldName, java.lang.String newName, Labels labels, boolean above)
private static void	searchHiddenDataIDs(HiddenDataElement element, java.util.Vector<java.lang.String> list)
private static void	searchIDsInSubtree(Node root, java.util.Vector<java.lang.String> list, boolean includeLabels, boolean includeNodeHiddenData, boolean includeBranchHiddenData)
private static void	searchLabelIDsInLabelBlock(Labels labels, boolean above, java.util.Vector<java.lang.String> list) Adds all label IDs to the specified list.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

RAND_CHARS

public static final java.lang.String RAND_CHARS

See Also:

Constant Field Values

RAND_LENGTH

public static final int RAND_LENGTH

See Also:

Constant Field Values

Constructor Detail

IDManager

public IDManager()

Method Detail

searchLabelIDsInLabelBlock

private static void searchLabelIDsInLabelBlock(Labels labels,
                                               boolean above,
                                               java.util.Vector<java.lang.String> list)

Adds all label IDs to the specified list. If one ID is present several times, it is only added once. Empty IDs ("") are not added.

Parameters:

labels -

above -

list -

searchHiddenDataIDs

private static void searchHiddenDataIDs(HiddenDataElement element,
                                        java.util.Vector<java.lang.String> list)

searchIDsInSubtree

private static void searchIDsInSubtree(Node root,
                                       java.util.Vector<java.lang.String> list,
                                       boolean includeLabels,
                                       boolean includeNodeHiddenData,
                                       boolean includeBranchHiddenData)

getIDs

public static java.lang.String[] getIDs(Node root)

Searches for all IDs (hidden data and label IDs) present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getLabelIDs

public static java.lang.String[] getLabelIDs(Node root)

Searches for all label IDs present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getHiddenBranchDataIDs

public static java.lang.String[] getHiddenBranchDataIDs(Node root)

Searches for all the IDs of hidden data that is assigned to a branch present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getHiddenNodeDataIDs

public static java.lang.String[] getHiddenNodeDataIDs(Node root)

Searches for all the IDs of hidden data that is assigned to a node present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getVector

private static java.util.Vector<java.lang.String> getVector(Node root,
                                                            boolean includeLabels,
                                                            boolean includeNodeHiddenData,
                                                            boolean includeBranchHiddenData)

getIDVector

public static java.util.Vector<java.lang.String> getIDVector(Node root)

Searches for all IDs present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getLabelIDVector

public static java.util.Vector<java.lang.String> getLabelIDVector(Node root)

getHiddenBranchDataIDVector

public static java.util.Vector<java.lang.String> getHiddenBranchDataIDVector(Node root)

getHiddenNodeDataIDVector

public static java.util.Vector<java.lang.String> getHiddenNodeDataIDVector(Node root)

renameLabelIDInLabelBlock

private static void renameLabelIDInLabelBlock(java.lang.String oldName,
                                              java.lang.String newName,
                                              Labels labels,
                                              boolean above)

renameHiddenDataID

private static void renameHiddenDataID(HiddenDataElement element,
                                       java.lang.String oldName,
                                       java.lang.String newName)

renameID

public static void renameID(java.lang.String oldName,
                            java.lang.String newName,
                            Node root)

Changes all accurences of the given ID in the subtree under root.

Parameters:

root - - the root node of the subtree where the renaming should take place

newID

public static java.lang.String newID(java.util.Vector<java.lang.String> ids)

getFirstLabel

public static Label getFirstLabel(Node root,
                                  java.lang.String id)

idExists

public static boolean idExists(Node root,
                               java.lang.String id)