Uses of Class
info.bioinfweb.treegraph.document.Branch

Packages that use Branch

info.bioinfweb.treegraph.document
info.bioinfweb.treegraph.document.io.xtg
info.bioinfweb.treegraph.document.nodedata
info.bioinfweb.treegraph.document.undo
info.bioinfweb.treegraph.document.undo.edit
info.bioinfweb.treegraph.graphics.positionpaint
info.bioinfweb.treegraph.gui.treeframe

Uses of Branch in info.bioinfweb.treegraph.document

Fields in info.bioinfweb.treegraph.document declared as Branch

private Branch	Node.afferentBranch
private Branch	Labels.holdingBranch

Methods in info.bioinfweb.treegraph.document that return Branch

Branch	Branch.clone() Clones this Branch including its Labels-object with the included Labels.
Branch	Node.getAfferentBranch()
static Branch[]	TreeSerializer.getBranches(Node root)
Branch	Labels.getHoldingBranch()

Methods in info.bioinfweb.treegraph.document with parameters of type Branch

void	Node.setAfferentBranch(Branch afferentBranch) Sets the specified branch as the afferent branch of this node and additionally sets this node as the target node of the specified branch.
void	Labels.setHoldingBranch(Branch holdingBranch)

Constructors in info.bioinfweb.treegraph.document with parameters of type Branch

Labels(Branch holdingBranch)

Uses of Branch in info.bioinfweb.treegraph.document.io.xtg

Methods in info.bioinfweb.treegraph.document.io.xtg with parameters of type Branch

private void

XTGReader.readBranch(javax.xml.stream.events.StartElement rootElement, Branch b)

Uses of Branch in info.bioinfweb.treegraph.document.nodedata

Methods in info.bioinfweb.treegraph.document.nodedata that return Branch

Branch	HiddenBranchDataAdapter.getDataElement(Node node)
Branch	BranchLengthAdapter.getDataElement(Node node)

Uses of Branch in info.bioinfweb.treegraph.document.undo

Methods in info.bioinfweb.treegraph.document.undo that return Branch

protected Branch

ComplexDocumentEdit.findEquivilant(Branch old) Returns the branch in the new tree (copy of the old) with the equivilant position to old.

Methods in info.bioinfweb.treegraph.document.undo with parameters of type Branch

protected Branch

ComplexDocumentEdit.findEquivilant(Branch old) Returns the branch in the new tree (copy of the old) with the equivilant position to old.

Uses of Branch in info.bioinfweb.treegraph.document.undo.edit

Fields in info.bioinfweb.treegraph.document.undo.edit declared as Branch

private Branch	SeparateBranchEdit.branch
private Branch	PasteLabelEdit.branch
private Branch	PasteAllLabelsEdit.branch
private Branch	BranchLengthEdit.branch
private Branch	RerootEdit.rootingPoint

Methods in info.bioinfweb.treegraph.document.undo.edit with parameters of type Branch

private void	RerootEdit.copyBranchData(Branch source, Branch target)
private void	RerootEdit.reroot(Branch position)

Constructors in info.bioinfweb.treegraph.document.undo.edit with parameters of type Branch

BranchLengthEdit(Document document, Branch branch, double newLength)

PasteAllLabelsEdit(Document document, Branch branch, Label[] labelList)

PasteLabelEdit(Document document, Branch branch, Label label)

RerootEdit(Document document, Branch rootingPoint)

SeparateBranchEdit(Document document, Branch branch)

Uses of Branch in info.bioinfweb.treegraph.graphics.positionpaint

Methods in info.bioinfweb.treegraph.graphics.positionpaint with parameters of type Branch

private void	RectangularCladogramPainter.paintBranch(Branch b)
private void	RectangularCladogramPositioner.positionLabelBlockX(Branch branch, boolean above)
private void	RectangularCladogramPositioner.positionLabelBlockY(Branch branch)
protected float	RectangularCladogramPositioner.rescaleBranchWidth(Branch branch, float width) This methode can be overwritten by extending classes to define a different rescaling process.
protected float	PhylogramPositioner.rescaleBranchWidth(Branch branch, float width) This method is overwritten to regard the stored branch lengths.
private ConcretePaintableElement	RectangularCladogramPositioner.searchLabelBlock(Branch branch, float x, float y, float margin)

Uses of Branch in info.bioinfweb.treegraph.gui.treeframe

Methods in info.bioinfweb.treegraph.gui.treeframe that return Branch

Branch

TreeSelection.getFirstBranch()