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## Uses of Class
info.bioinfweb.treegraph.document.Tree

Packages that use Tree
info.bioinfweb.treegraph.document | Contains the classes that represent the data structure of TreeGraph 2 (document elements and formats) as well as all edit operations in the `undo`-package to manipulate the data structure and classes to read and write a document from and to different formats (`io`- subpackage).
info.bioinfweb.treegraph.document.io.newick |
info.bioinfweb.treegraph.gui.actions.edit |
info.bioinfweb.treegraph.gui.dialogs.datatable |
info.bioinfweb.treegraph.gui.dialogs.nodedatainput |

Uses of Tree in info.bioinfweb.treegraph.document

Fields in info.bioinfweb.treegraph.document declared as Tree
`private Tree` | `Legends.tree`
`private Tree` | `Document.tree`

Methods in info.bioinfweb.treegraph.document that return Tree
`Tree` | `Legends.getTree()`
`Tree` | `Document.getTree()`

Methods in info.bioinfweb.treegraph.document with parameters of type Tree
`void` | `Document.setTree(Tree tree)`

Constructors in info.bioinfweb.treegraph.document with parameters of type Tree
`Legends(Tree tree)`

Uses of Tree in info.bioinfweb.treegraph.document.io.newick

Methods in info.bioinfweb.treegraph.document.io.newick that return Tree
`static Tree` | `NewickStringReader.read(java.lang.String newick)`
`static Tree` | `NewickStringReader.read(java.lang.String newick, NodeDataAdapter internalAdapter)`
`static Tree` | `NewickStringReader.read(java.lang.String newick, NodeDataAdapter internalAdapter, TranslTable translTable, boolean translateInternals)`
`private static Tree` | `NewickStringReader.readTree(java.util.Vector<NewickToken> tokens, NodeDataAdapter internalAdapter, TranslTable translTable, boolean translateInternals)`

Methods in info.bioinfweb.treegraph.document.io.newick with parameters of type Tree
`static java.lang.String` | `NewickStringWriter.write(Tree tree, NodeDataAdapter internalAdapter, NodeDataAdapter leafAdapter)`

Uses of Tree in info.bioinfweb.treegraph.gui.actions.edit

Methods in info.bioinfweb.treegraph.gui.actions.edit with parameters of type Tree
`private void` | `SearchTextAction.searchScaleBar(Tree tree)`

Uses of Tree in info.bioinfweb.treegraph.gui.dialogs.datatable

Methods in info.bioinfweb.treegraph.gui.dialogs.datatable with parameters of type Tree
`private void` | `AssignImportColumnsDialog.createInputs(int count, Tree tree)`
`NodeDataAdapter[]` | `AssignImportColumnsDialog.execute(int count, Tree tree)`

Uses of Tree in info.bioinfweb.treegraph.gui.dialogs.nodedatainput

Methods in info.bioinfweb.treegraph.gui.dialogs.nodedatainput with parameters of type Tree
`void` | `NodeDataInput.setAdapters(Tree tree)` Refeshs the selectable node data adapters.
`void` | `NodeDataComboBoxModel.setAdapters(Tree tree)` Equvilent to a call of `setAdapters(tree, false)`.
`void` | `NodeDataInput.setAdapters(Tree tree, boolean branchLengthSelectable, boolean newIDSelectable)` Refeshs the selectable node data adapters.
`void` | `NodeDataComboBoxModel.setAdapters(Tree tree, boolean branchLengthSelectable, boolean newIDSelectable)`

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