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## A

AboutAction - Class in info.bioinfweb.treegraph.gui.actions.help
AboutAction() - Constructor for class info.bioinfweb.treegraph.gui.actions.help.AboutAction
AboutDialog - Class in info.bioinfweb.treegraph.gui.dialogs
AboutDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
above - Variable in class info.bioinfweb.treegraph.document.format.LabelPositionFormats
above - Variable in class info.bioinfweb.treegraph.document.format.operate.LabelAboveOperator
aboveBelowGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
aboveBelowPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
aboveMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
aboveRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
AbstractBranchOperator - Class in info.bioinfweb.treegraph.document.format.operate
AbstractBranchOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractBranchOperator
AbstractDocumentReader - Class in info.bioinfweb.treegraph.document.io
AbstractDocumentReader() - Constructor for class info.bioinfweb.treegraph.document.io.AbstractDocumentReader
AbstractDocumentWriter - Class in info.bioinfweb.treegraph.document.io
AbstractDocumentWriter() - Constructor for class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
AbstractFilter - Class in info.bioinfweb.treegraph.document.io
AbstractFilter() - Constructor for class info.bioinfweb.treegraph.document.io.AbstractFilter
AbstractGraphicWriter - Class in info.bioinfweb.treegraph.graphics.export
AbstractGraphicWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.AbstractGraphicWriter
AbstractIDElementAdapter - Class in info.bioinfweb.treegraph.document.nodedata
  Node data adapters that need to store an ID can be inherited from this abstract class.
AbstractIDElementAdapter(String) - Constructor for class info.bioinfweb.treegraph.document.nodedata.AbstractIDElementAdapter
AbstractLabelOperator - Class in info.bioinfweb.treegraph.document.format.operate
AbstractLabelOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractLabelOperator
AbstractLegendOperator - Class in info.bioinfweb.treegraph.document.format.operate
AbstractLegendOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractLegendOperator
AbstractLineOperator - Class in info.bioinfweb.treegraph.document.format.operate
AbstractLineOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractLineOperator
AbstractOperator - Class in info.bioinfweb.treegraph.document.format.operate
AbstractOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractOperator
AbstractTextElementDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement
AbstractTextElementDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
AbstractTextElementDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
AbstractTextOperator - Class in info.bioinfweb.treegraph.document.format.operate
AbstractTextOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractTextOperator
accept(File) - Method in class info.bioinfweb.treegraph.document.io.AbstractFilter
accept(File) - Method in interface info.bioinfweb.treegraph.document.io.DocumentFilter
accept(File) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusFilter
ActionManagement - Class in info.bioinfweb.treegraph.gui.actions
  This class organizes the action objects of TreeGraph.
ActionManagement(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.ActionManagement
actionManagement - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.DocumentAction
  Determines the currently active internal frame and passes it to `DocumentAction.onActionPerformed(ActionEvent, TreeInternalFrame)`.
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.file.NewDocumentAction
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.file.OpenAction
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.help.AboutAction
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.help.HelpTopicAction
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.window.CascadeAction
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.window.SelectFrameAction
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.window.TileHorizontalAction
actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.window.TileVerticalAction
adapter - Variable in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit
adapter - Variable in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit
adapter - Variable in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit
adapter - Variable in class info.bioinfweb.treegraph.document.undo.format.BranchWidthsFromNodeDataEdit
adapter - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsFromNodeDataEdit
adapterComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog
adapterComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
adapters - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel
adapters - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
adapters - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel
add(DistanceValue) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue
add(float) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue
  Adds the specified value to the stored value in millimeters.
add(String, String) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument
add(String, String) - Method in class info.bioinfweb.treegraph.document.io.nexus.TranslTable
add(Label) - Method in class info.bioinfweb.treegraph.document.Labels
  Adds a label to the List.
add(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.LeafList
add(AddSupportValuesEdit.LeafList) - Method in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.LeafList
add(NodeDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel
add(ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
addButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog
AddCalculator - Class in info.bioinfweb.treegraph.gui.dialogs.datatable.math
  Adds a value to the node data.
AddCalculator(double) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.math.AddCalculator
addEdit(UndoableEdit) - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit
addend - Variable in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit
addend - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.math.AddCalculator
addEntry(String, String) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
addHints(GraphicWriterHints) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.JPEGPrefPanel
addHints(GraphicWriterHints) - Method in interface info.bioinfweb.treegraph.gui.dialogs.exporttographic.PreferencesPanel
  This method should add the graphic writer hints that are specified by the components contained in the particular implementation
addHints(GraphicWriterHints) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TIFFPrefPanel
addHints(GraphicWriterHints) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TransparenrtBgPrefPanel
addInputListener(NodeDataInputListener) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NewNodeDataInput
addInternalFrame(JInternalFrame) - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
addInternalFrame(Document) - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
addLabelBlock(Vector<PaintableElement>, boolean, boolean, Labels, boolean) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer
addLabelsWithID(Vector<Label>, Node, String) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer
addLeafReferences(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit
  Adds direkt references to all leaves of the subtree under `root` to the attribute map of `root`.
addNewAdapters() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel
addOperator(FormatOperator) - Method in class info.bioinfweb.treegraph.document.format.operate.OperatorMap
addOperators(Vector<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel
addOperators(Vector<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
addOperators(Vector<FormatOperator>) - Method in interface info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatTab
addOperators(Vector<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel
addOperators(Vector<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
addOperators(Vector<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
addOperators(Vector<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
addOperators(Vector<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel
addOperators(Vector<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
addSpacer(JPanel, int) - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
  This method initializes this
addSubtree(Vector<PaintableElement>, Node, boolean, boolean, boolean, boolean, boolean) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer
AddSupportValuesAction - Class in info.bioinfweb.treegraph.gui.actions.file
AddSupportValuesAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.AddSupportValuesAction
AddSupportValuesDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
AddSupportValuesDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
AddSupportValuesEdit - Class in info.bioinfweb.treegraph.document.undo.edit
AddSupportValuesEdit(Document, Document, NodeDataAdapter, AddSupportValuesEdit.TargetType, String) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit
AddSupportValuesEdit.LeafList - Class in info.bioinfweb.treegraph.document.undo.edit
AddSupportValuesEdit.LeafList() - Constructor for class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.LeafList
AddSupportValuesEdit.TargetType - Enum in info.bioinfweb.treegraph.document.undo.edit
AddSupportValuesEdit.TargetType() - Constructor for enum info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.TargetType
addTextStyle(int) - Method in class info.bioinfweb.treegraph.document.format.TextFormats
addToNode(NodeLadderizeComparable[], Node) - Static method in class info.bioinfweb.treegraph.document.NodeLadderizeComparable
  This method is used to reinsert sorted elements in the a subtree.
addToValuesButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
addTranscodingHints(Transcoder, GraphicWriterHints) - Method in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGWriter
addTranscodingHints(Transcoder, GraphicWriterHints) - Method in class info.bioinfweb.treegraph.graphics.export.SVGTranscodeWriter
  This method can be overwritten to add more transcoding hints to the transcoder.
addTranscodingHints(Transcoder, GraphicWriterHints) - Method in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFWriter
addTreeViewListener(TreeViewPanelListener) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
addView(DocumentView) - Method in class info.bioinfweb.treegraph.document.Document
afferentBranch - Variable in class info.bioinfweb.treegraph.document.Node
alertPositioners() - Method in class info.bioinfweb.treegraph.document.Document
  Alerts all registered positioners to reposition the tree elements becuase of made changes.
ALIGN_LEFT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ALIGN_RIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ALIGN_TREE_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
alignGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
alignment - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
alignmentPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
alignMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
ALTERNATIVE_EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.xtg.XTGFilter
ALTERNATIVE_EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter
ALTERNATIVE_EXTENSION_1 - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter
ALTERNATIVE_EXTENSION_2 - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter
ALTERNATIVE_SELECTION_COLOR - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
anchor - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLegendEdit
anchorNames - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats
apachePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
apacheScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
apacheTextArea - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.BranchWidthFromNodeDataDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorsFromNodeDataDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog
applyElements - Variable in class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit
ApplyNameTableAction - Class in info.bioinfweb.treegraph.gui.actions.edit
ApplyNameTableAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.ApplyNameTableAction
applyNameTableButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
ApplyNameTableDialog - Class in info.bioinfweb.treegraph.gui.dialogs
ApplyNameTableDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog
ApplyNameTableDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog
ApplyNameTableEdit - Class in info.bioinfweb.treegraph.document.undo.edit
ApplyNameTableEdit(Document, NodeDataAdapter, List<String>, List<String>, boolean, boolean, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit
applyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.AbstractOperator
applyTo(ElementFormats) - Method in interface info.bioinfweb.treegraph.document.format.operate.FormatOperator
aspectRatio - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog
assign(BranchFormats) - Method in class info.bioinfweb.treegraph.document.format.BranchFormats
assign(DistanceDimension) - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension
assign(DistanceValue) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue
assign(GlobalFormats) - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats
assign(Margin) - Method in class info.bioinfweb.treegraph.document.format.Margin
assign(NodeFormats) - Method in class info.bioinfweb.treegraph.document.format.NodeFormats
assign(ScaleBarFormats) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
assign(ScaleValue) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue
assign(HiddenDataMap) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
  Clears the current contents of the map and fills it with copies of the contents of the given map.
assign(TextElementData) - Method in class info.bioinfweb.treegraph.document.TextElementData
assignBranchFormats(BranchFormats) - Method in class info.bioinfweb.treegraph.document.format.BranchFormats
assignData(Node, TextElementData) - Method in class info.bioinfweb.treegraph.document.nodedata.HiddenDataAdapter
assignData(Node, TextElementData) - Method in class info.bioinfweb.treegraph.document.nodedata.LabelAdapter
assignData(Node, TextElementData) - Method in class info.bioinfweb.treegraph.document.nodedata.NodeNameAdapter
assignData(Node, TextElementData) - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter
assignDocument(Document) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
assignEdgeRadiusFormats(EdgeRadiusFormats) - Method in interface info.bioinfweb.treegraph.document.format.EdgeRadiusFormats
assignEdgeRadiusFormats(EdgeRadiusFormats) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
assignEdgeRadiusFormats(EdgeRadiusFormats) - Method in class info.bioinfweb.treegraph.document.format.NodeFormats
assignIDsToLabelBlock(Labels, boolean, int) - Method in class info.bioinfweb.treegraph.document.undo.edit.AssignLabelIDsEdit
  Assigns a new label ID to each label in this label block currently without an ID.
assignIDsToSubtree(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.AssignLabelIDsEdit
AssignImportColumnsDialog - Class in info.bioinfweb.treegraph.gui.dialogs.datatable
AssignImportColumnsDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog
assignImportDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
assignLabelData(Label) - Method in class info.bioinfweb.treegraph.document.Label
  Assigns the values of the passed label to this class.
AssignLabelIDsAction - Class in info.bioinfweb.treegraph.gui.actions.edit
AssignLabelIDsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.AssignLabelIDsAction
AssignLabelIDsEdit - Class in info.bioinfweb.treegraph.document.undo.edit
  This edit assigns label IDs to all labels in the tree which do not have an ID.
AssignLabelIDsEdit(Document) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.AssignLabelIDsEdit
assignLabelPosition(LabelPositionFormats) - Method in class info.bioinfweb.treegraph.document.format.LabelPositionFormats
assignLegendData(Legend) - Method in class info.bioinfweb.treegraph.document.Legend
  This method currently does not do anything but should be called in the `clone()`-method of derived classes anyway because `Legend` might contain data that needs to be copied in future versions.
assignLegendFormats(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
assignLegendPosition(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
  Adopts the position values and the anchors but not the owning legend object.
assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.BranchFormats
assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
assignLineFormats(LineFormats) - Method in interface info.bioinfweb.treegraph.document.format.LineFormats
assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.LineFormatsEntity
assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.NodeFormats
assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
assignPaintSize() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
assignScaleBarData(ScaleBar) - Method in class info.bioinfweb.treegraph.document.ScaleBar
  This method currently does not do anything but should be called in the `clone()`-method of derived classes anyway because `ScaleBar` might contain data that needs to be copied in future versions.
assignScaleBarFormats(ScaleBarFormats) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
assignTextElementData(TextElement) - Method in class info.bioinfweb.treegraph.document.TextElement
assignTextFormats(TextFormats) - Method in class info.bioinfweb.treegraph.document.format.TextFormats
assignTree(Node) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
  Assigns the node data in the subtree under root to this model.
assignUniqueNames() - Method in class info.bioinfweb.treegraph.document.Tree
  Assigns unique names to all nodes in the tree currently without one.
assignUniqueNamesToSubtree(Node) - Method in class info.bioinfweb.treegraph.document.Tree
  Assigns unique names to all nodes in the subtree under root currently without one.
assignValue(TextFormats) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
assignValueTo(DistanceValue) - Method in class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput
  Assigns the current value of the text-field to the given `DistanceValue`.
assignValueTo(ScaleValue) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput
assignValueTo(Margin) - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
  Assigns the current values of the text-fields to the given `Margin`.
ATTR_BG_COLOR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_BOTTOM - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_BRANCH_LENGTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_BRANCH_LENGTH_SCALE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_CONSTANT_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_DECIMAL_FORMAT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_EDGE_RADIUS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_FONT_FAMILY - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_HEIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_HORIZ_LABEL_SPACING - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_ID - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LABEL_ABOVE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LABEL_BLOCK_DISTANCE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LEFT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LEGEND_POS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LEGEND_SPACING - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LEGEND_STYLE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LINE_COLOR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LINE_NO - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LINE_POS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LINE_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LOCALE_COUNTRY - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LOCALE_LANG - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LOCALE_VARIANT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_LONG_INTERVAL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_MIN_BRANCH_LENGTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_MIN_SPACE_ABOVE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_MIN_SPACE_BELOW - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_MIN_TREE_DISTANCE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_RIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SCALE_BAR_ALIGN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SCALE_BAR_DISTANCE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SCALE_BAR_HEIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SCALE_BAR_INCREASE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SCALE_BAR_START - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SCALE_BAR_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SHOW_ROOTED - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SHOW_SCALE_BAR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_SMALL_INTERVAL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_TEXT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_TEXT_COLOR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_TEXT_HEIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_TEXT_IS_DECIMAL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_TEXT_ORIENTATION - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_TEXT_STYLE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_TOP - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_UNIQUE_NAME - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_VERT_LABEL_SPACING - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ATTR_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
attributeMap - Variable in class info.bioinfweb.treegraph.document.Node
AWTExceptionHandler - Class in info.bioinfweb.treegraph
  This class is used to handle exceptions during the processing of modal dialogs.
AWTExceptionHandler() - Constructor for class info.bioinfweb.treegraph.AWTExceptionHandler

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