A B C D E F G H I J K L M N O P Q R S T U V W X Z

S

SaveAction - Class in info.bioinfweb.treegraph.gui.actions.file

SaveAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.SaveAction

SaveAsAction - Class in info.bioinfweb.treegraph.gui.actions.file

SaveAsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.SaveAsAction

saveDataToFile(File) - Method in class info.bioinfweb.treegraph.document.Document

savedValues - Variable in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit

saveLegends() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

SaveLegendsEdit - Class in info.bioinfweb.treegraph.document.undo

This class should be a superclass of all classes that might delete nodes which are anchors to legends.

SaveLegendsEdit(Document) - Constructor for class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

saveOldColors(Node) - Method in class info.bioinfweb.treegraph.document.undo.format.ColorsFromNodeDataEdit

Saves the old branch and node line colors in two linear list (ordering is root, child 0..n)

saveOldWidths(Node) - Method in class info.bioinfweb.treegraph.document.undo.format.BranchWidthsFromNodeDataEdit

Saves the old widths in a linear list (ordering is root, child 0..n)

SCALE_BAR_LABEL_FORMAT - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

ScaleAlignment - Enum in info.bioinfweb.treegraph.document.format

ScaleAlignment() - Constructor for enum info.bioinfweb.treegraph.document.format.ScaleAlignment

ScaleBar - Class in info.bioinfweb.treegraph.document

This element represents a scale bar for the branch length values.

ScaleBar() - Constructor for class info.bioinfweb.treegraph.document.ScaleBar

scaleBar - Variable in class info.bioinfweb.treegraph.document.Tree

ScaleBarFormats - Class in info.bioinfweb.treegraph.document.format

ScaleBarFormats() - Constructor for class info.bioinfweb.treegraph.document.format.ScaleBarFormats

ScaleBarFormatsOperator - Class in info.bioinfweb.treegraph.document.format.operate

There only one operator for all scale bar formats because there can only be one scale bar per document.

ScaleBarFormatsOperator(ScaleBarFormats) - Constructor for class info.bioinfweb.treegraph.document.format.operate.ScaleBarFormatsOperator

ScaleBarPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

ScaleBarPanel(ElementFormatsDialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

This is the default constructor

scaleBarPresent - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

ScaleValue - Class in info.bioinfweb.treegraph.document.format

Stores the length of a branch length scale bar.

ScaleValue() - Constructor for class info.bioinfweb.treegraph.document.format.ScaleValue

ScaleValue(float) - Constructor for class info.bioinfweb.treegraph.document.format.ScaleValue

ScaleValueInput - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

ScaleValueInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput

scan(String) - Static method in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

scrollElementToVisible(PaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

scrollPane - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

searchByID(String, boolean) - Method in class info.bioinfweb.treegraph.document.Labels

searchElementToPosition(Node, float, float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

searchHiddenDataIDs(HiddenDataElement, Vector<String>) - Static method in class info.bioinfweb.treegraph.document.IDManager

searchIDsInSubtree(Node, Vector<String>, boolean, boolean, boolean) - Static method in class info.bioinfweb.treegraph.document.IDManager

searchLabelBlock(Branch, float, float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

searchLabelBlock(Labels, boolean) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction

searchLabelIDsInLabelBlock(Labels, boolean, Vector<String>) - Static method in class info.bioinfweb.treegraph.document.IDManager

Adds all label IDs to the specified list.

searchLeafNames(Node, Vector<String>) - Method in class info.bioinfweb.treegraph.document.Node

searchLegends(Legends) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction

searchPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

searchPattern - Variable in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit

searchScaleBar(Tree) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction

searchSubtree(Node) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction

searchSubtreeEnd(Vector<NewickToken>, int, int) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

SearchTextAction - Class in info.bioinfweb.treegraph.gui.actions.edit

SearchTextAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction

SearchTextDialog - Class in info.bioinfweb.treegraph.gui.dialogs

SearchTextDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

searchTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

searchToken(Vector<NewickToken>, int, int, TokenType) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

SECOUND_LINE_POS - Static variable in class info.bioinfweb.treegraph.document.io.tgf.TGFReader

select(String[], String[], TranslTable, boolean) - Method in class info.bioinfweb.treegraph.document.io.DefaultTreeSelector

select(String[], String[], TranslTable, boolean) - Method in interface info.bioinfweb.treegraph.document.io.TreeSelector

select(String[], String[], TranslTable, boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

SelectAllAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectAllAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectAllAction

selected - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel

selectedAdapter() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NewNodeDataInput

selectedAdapter() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataInput

Returns the currently selected adapter.

selectFrame(boolean) - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

SelectFrameAction - Class in info.bioinfweb.treegraph.gui.actions.window

SelectFrameAction(JInternalFrame, int) - Constructor for class info.bioinfweb.treegraph.gui.actions.window.SelectFrameAction

selection - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

selection - Variable in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction

selection - Variable in class info.bioinfweb.treegraph.gui.dialogs.EditDialog

selection - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

SELECTION_DISTANCE - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

SELECTION_MARGIN - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

selectionChanged(ChangeEvent) - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

selectionChanged(ChangeEvent) - Method in interface info.bioinfweb.treegraph.gui.treeframe.TreeViewPanelListener

selectionColor(Color) - Static method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

selectionPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

SelectLabelsInSubtreeAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectLabelsInSubtreeAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsInSubtreeAction

SelectLabelsWithIDAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectLabelsWithIDAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsWithIDAction

SelectLeafsInDocumentAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectLeafsInDocumentAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInDocumentAction

SelectLeafsInSubtreeAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectLeafsInSubtreeAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInSubtreeAction

SelectLegendsAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectLegendsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsAction

SelectLegendsWithPosIndexAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectLegendsWithPosIndexAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsWithPosIndexAction

selectMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

SelectSubtreeAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectSubtreeAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectSubtreeAction

SelectTypeInDocumentAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectTypeInDocumentAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInDocumentAction

SelectTypeInSubtreeAction - Class in info.bioinfweb.treegraph.gui.actions.select

SelectTypeInSubtreeAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInSubtreeAction

self - Variable in class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorsFromNodeDataDialog

This field is necessary to acces this intance from the action listeners.

self - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

SeparateBranchAction - Class in info.bioinfweb.treegraph.gui.actions.edit

SeparateBranchAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.SeparateBranchAction

SeparateBranchEdit - Class in info.bioinfweb.treegraph.document.undo.edit

SeparateBranchEdit(Document, Branch) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.SeparateBranchEdit

separatorGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

separatorPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

separatorTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

serialVersionUID - Static variable in exception info.bioinfweb.treegraph.document.io.newick.NewickException

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.BranchWidthFromNodeDataDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorsFromNodeDataDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.JPEGPrefPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TransparenrtBgPrefPanel

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup

serialVersionUID - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

set(int, NodeDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel

set(ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

Sets the specified element as the only selected element.

setAbove(boolean) - Method in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

setActionStatusBySelection(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.ActionManagement

setAdapters(Tree) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel

Equvilent to a call of setAdapters(tree, false).

setAdapters(Tree, boolean, boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel

setAdapters(Tree) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataInput

Refeshs the selectable node data adapters.

setAdapters(Tree, boolean, boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataInput

Refeshs the selectable node data adapters.

setAfferentBranch(Branch) - Method in class info.bioinfweb.treegraph.document.Node

Sets the specified branch as the afferent branch of this node and additionally sets this node as the target node of the specified branch.

setAlignment(ScaleAlignment) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

setAnchor(int, Node) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

setAnchorName(int, String) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

setBackgroundColor(Color) - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats

setBracketPos(PositionData) - Method in class info.bioinfweb.treegraph.document.LegendPositionData

setBranchLengthScale(float) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput

The branch length scale is used to convert millimeters and points to scale values.

setButtonStatus() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

setButtonStatus() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

setColumnWidths() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

setConstantWidth(boolean) - Method in class info.bioinfweb.treegraph.document.format.BranchFormats

setCurrentDirectory(File) - Method in class info.bioinfweb.treegraph.gui.CurrentDirectoryModel

setDataType(int, boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

setDataTypeInSubtree(Node, TextElementDataAdapter, boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

setDecimal(Node, double) - Method in class info.bioinfweb.treegraph.document.nodedata.BranchLengthAdapter

setDecimal(Node, double, int) - Method in class info.bioinfweb.treegraph.document.nodedata.BranchLengthAdapter

setDecimal(Node, double) - Method in interface info.bioinfweb.treegraph.document.nodedata.NodeDataAdapter

setDecimal(Node, double) - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter

setDecimal(Node, double) - Method in class info.bioinfweb.treegraph.document.nodedata.UniqueNameAdapter

setDecimal(double) - Method in class info.bioinfweb.treegraph.document.TextElementData

setDecimalCheckBoxStatus() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

setDecimalFormat(DecimalFormat, Locale) - Method in class info.bioinfweb.treegraph.document.format.TextFormats

Sets a new decimal format object.

setDecimalToAllButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

setDefaultName(String) - Method in class info.bioinfweb.treegraph.document.Document

setDelimited(boolean) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken

setDifAbove(float) - Method in class info.bioinfweb.treegraph.document.NodePositionData

setDifBelow(float) - Method in class info.bioinfweb.treegraph.document.NodePositionData

setDocument(Document) - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog

setDocument(Document) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

Sets this view to a new model and repaints the element using the data of the new document.

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.DocumentAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.ApplyNameTableAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.AssignLabelIDsAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.ChangeLabelIDAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CollapseNodeAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CopyAllLabelsAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CopyElementAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.EditBranchLengthAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.EditBranchNodeDataAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.EditTextElementAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeDownAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeUpAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.NewLegendAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.NewNodeAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.NewTextLabelAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.PasteAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.RedoAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.RerootAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SeparateBranchAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.UndoAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.AddSupportValuesAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.CloseAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExitAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExportToNewickNexusAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.NewDocumentAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.OpenAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.SaveAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.file.SaveAsAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.format.BranchWidthsFromNodeDataAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.format.ColorsFromNodeDataAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.format.EditElementFormatsAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.format.EditGlobalFormatsAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.format.ReanchorLegendAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.format.ShowHideScaleBarAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.format.ShowRootedAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectAllAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsInSubtreeAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsWithIDAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInDocumentAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInSubtreeAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsWithPosIndexAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectSubtreeAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInDocumentAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInSubtreeAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.view.ChangePainterIDAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.view.SetZoomAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.window.NextDocumentAction

setEnabled(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.window.PreviousDocumentAction

setEnabled(boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.DecimalUnitInput

setEnabled(boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NewNodeDataInput

setEnabled(boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataInput

setFile(File) - Method in class info.bioinfweb.treegraph.document.Document

setFontName(String) - Method in class info.bioinfweb.treegraph.document.format.TextFormats

setFormats(ElementFormats) - Method in class info.bioinfweb.treegraph.document.Branch

setFormats(ElementFormats) - Method in class info.bioinfweb.treegraph.document.IconLabel

setFormats(ElementFormats) - Method in class info.bioinfweb.treegraph.document.Legend

setFormats(ElementFormats) - Method in class info.bioinfweb.treegraph.document.Node

setFormats(ElementFormats) - Method in interface info.bioinfweb.treegraph.document.PaintableElement

setFormats(ElementFormats) - Method in class info.bioinfweb.treegraph.document.ScaleBar

setFormats(ElementFormats) - Method in class info.bioinfweb.treegraph.document.TextLabel

setFormats(GlobalFormats) - Method in class info.bioinfweb.treegraph.document.undo.format.GlobalFormatsEdit

setFrame(TreeInternalFrame) - Method in class info.bioinfweb.treegraph.document.Document

setHeight(DistanceValue) - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension

setHeightAbove(float) - Method in class info.bioinfweb.treegraph.document.NodePositionData

setHeightBelow(float) - Method in class info.bioinfweb.treegraph.document.NodePositionData

setHelpTopic(int) - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

setHoldingBranch(Branch) - Method in class info.bioinfweb.treegraph.document.Labels

setID(String) - Method in class info.bioinfweb.treegraph.document.Label

setID(String) - Method in class info.bioinfweb.treegraph.document.nodedata.NewHiddenBranchDataAdapter

setID(String) - Method in class info.bioinfweb.treegraph.document.nodedata.NewHiddenNodeDataAdapter

setID(String) - Method in class info.bioinfweb.treegraph.document.nodedata.NewLabelAdapter

setID(String) - Method in interface info.bioinfweb.treegraph.document.nodedata.NewNodeDataAdapter

Defines the ID of the node data column that is created by this node data adapter.

setID(String) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NewNodeDataInput

Sets the ID displayed in the contained text field.

setIDs(Document) - Method in class info.bioinfweb.treegraph.gui.dialogs.LabelIDComboBox

setIncreasing(boolean) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

setInMillimeters(float) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue

setInMillimeters(float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue

setInPixels(float, float) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue

setInPixels(float, float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue

setInPoints(float) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue

setInPoints(float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue

setInUnits(float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue

setLabels(Labels) - Method in class info.bioinfweb.treegraph.document.Label

setLegends(Legends) - Method in class info.bioinfweb.treegraph.document.Legend

setLegendsReanchored(boolean) - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

setLegendsRemoved(boolean) - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

setLegendStyle(LegendStyle) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

setLength(double) - Method in class info.bioinfweb.treegraph.document.Branch

setLength(double) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken

setLineColor(Color) - Method in class info.bioinfweb.treegraph.document.format.BranchFormats

setLineColor(Color) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

setLineColor(Color) - Method in interface info.bioinfweb.treegraph.document.format.LineFormats

setLineColor(Color) - Method in class info.bioinfweb.treegraph.document.format.LineFormatsEntity

setLineColor(Color) - Method in class info.bioinfweb.treegraph.document.format.NodeFormats

setLineColor(Color) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

setLineNumber(int) - Method in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

setLinePosition(int) - Method in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

setLocale(Locale) - Method in class info.bioinfweb.treegraph.document.format.TextFormats

Sets the local object which is used to

setLongInterval(int) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

setMaxColor(Color) - Method in class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorPreviewPanel

setMinColor(Color) - Method in class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorPreviewPanel

setNames() - Method in class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog

setNewColors(Node) - Method in class info.bioinfweb.treegraph.document.undo.format.ColorsFromNodeDataEdit

Sets the line colors according to the specified border colors and node data.

setNewWidths(Node) - Method in class info.bioinfweb.treegraph.document.undo.format.BranchWidthsFromNodeDataEdit

Sets the branch widths according to the specified range and node data.

setOldColors(Node, int) - Method in class info.bioinfweb.treegraph.document.undo.format.ColorsFromNodeDataEdit

Assigns the previously saved line colors to the branches and nodes in the subtree under root.

setOldWidths(Node, int) - Method in class info.bioinfweb.treegraph.document.undo.format.BranchWidthsFromNodeDataEdit

Assigns the previously saved line widths to the branches in the subtree under root.

setOnlyNewAdapters() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel

setOnlyNewAdapters() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataInput

After the call of this method only adapters which create new data will be available.

setOrientation(TextOrientation) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

setOrientation(ToolBarPanel.ToolBarOrientation) - Method in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel

setOwner(Label) - Method in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

setOwner(Legend) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

setPainterType(PositionPaintType) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

setPaintStart(Node) - Method in class info.bioinfweb.treegraph.document.Tree

setParent(Node) - Method in class info.bioinfweb.treegraph.document.Node

setPath(Node) - Method in class info.bioinfweb.treegraph.document.TreePath

setPereferencesPanel(GraphicFormat) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

setPosition(int) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

The position of a legend defined in which order vertically overlapping legends are positioned.

setPositionFormats(LabelPositionFormats) - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats

setPositionFormats(LabelPositionFormats) - Method in class info.bioinfweb.treegraph.document.IconLabel

setPositionFormats(LabelPositionFormats) - Method in class info.bioinfweb.treegraph.document.Label

setPositionFormats(LabelPositionFormats) - Method in class info.bioinfweb.treegraph.document.TextLabel

setResolution(float) - Method in class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput

setScaleBar(ScaleBar) - Method in class info.bioinfweb.treegraph.document.Tree

setScrollPaneBgColor(Color) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

setSelectedAdapter(Class<? extends NodeDataAdapter>) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel

Selects the adapter which is an instance (not instance of a subclass) of the given class.

setSelectedAdapter(Class<? extends NodeDataAdapter>) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataInput

Selects the adapter which is an instance (not instance of a subclass) of the given class.

setSelectedItem(Object) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel

setSelection(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog

setShowRooted(boolean) - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats

setShowScaleBar(boolean) - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats

setShowWarnings(boolean) - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

setShowWarnings(boolean) - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

setShowWarnings(boolean) - Method in interface info.bioinfweb.treegraph.document.undo.WarningEdit

setSmallInterval(float) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

setStartLeft(boolean) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

setString(String) - Method in class info.bioinfweb.treegraph.document.TextElementData

setTargetNode(Node) - Method in class info.bioinfweb.treegraph.document.Branch

setText(String) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken

setText(Node, String) - Method in class info.bioinfweb.treegraph.document.nodedata.BranchLengthAdapter

setText(Node, String) - Method in interface info.bioinfweb.treegraph.document.nodedata.NodeDataAdapter

setText(Node, String) - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter

setText(Node, String) - Method in class info.bioinfweb.treegraph.document.nodedata.UniqueNameAdapter

setTextColor(Color) - Method in class info.bioinfweb.treegraph.document.format.TextFormats

setTextElement(TextElement) - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

setTextPos(PositionData) - Method in class info.bioinfweb.treegraph.document.LegendPositionData

setTextStyle(int) - Method in class info.bioinfweb.treegraph.document.format.TextFormats

setTextToAllButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

setTree(Tree) - Method in class info.bioinfweb.treegraph.document.Document

setType(Node, boolean) - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter

setUniqueName(String) - Method in class info.bioinfweb.treegraph.document.Node

The unique name is used to identify nodes in the XML-file which are associated with legends.

setUnit(RulerUnit) - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

setUnit(RulerUnit) - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField

SetUserZoomAction - Class in info.bioinfweb.treegraph.gui.actions.view

SetUserZoomAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.view.SetUserZoomAction

setValue(DistanceValue) - Method in class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput

Assigns the given value to the text-field.

setValue(TextElement) - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

setValue(TextFormats) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

setValue(ScaleValue) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput

setValue(Margin) - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput

Assigns the given value to the text-fields.

setValueAt(Object, int, int) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

setValues(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

setValues(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

setValues(TreeSelection) - Method in interface info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatTab

The values of the first compatible element in the selection should be set to the input components of this tab.

setValues(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel

setValues(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

setValues(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

setValues(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

setValues(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

setValues(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

setValues(GlobalFormats) - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

setVersion(int) - Method in class info.bioinfweb.treegraph.document.Document

setWidth(DistanceValue) - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension

setZoom(float) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

SetZoomAction - Class in info.bioinfweb.treegraph.gui.actions.view

SetZoomAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.view.SetZoomAction

SetZoomToOriginalAction - Class in info.bioinfweb.treegraph.gui.actions.view

SetZoomToOriginalAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.view.SetZoomToOriginalAction

sharedInstance - Static variable in class info.bioinfweb.treegraph.document.nodedata.NodeNameAdapter

SHORT_DASH_SCALE_FACTOR - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

ShowHideScaleBarAction - Class in info.bioinfweb.treegraph.gui.actions.format

ShowHideScaleBarAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.ShowHideScaleBarAction

ShowHideScaleBarEdit - Class in info.bioinfweb.treegraph.document.undo.format

ShowHideScaleBarEdit(Document, GlobalFormats) - Constructor for class info.bioinfweb.treegraph.document.undo.format.ShowHideScaleBarEdit

showRooted - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

ShowRootedAction - Class in info.bioinfweb.treegraph.gui.actions.format

ShowRootedAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.ShowRootedAction

showRootedCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

ShowRootedEdit - Class in info.bioinfweb.treegraph.document.undo.format

ShowRootedEdit(Document, GlobalFormats) - Constructor for class info.bioinfweb.treegraph.document.undo.format.ShowRootedEdit

showScaleBar - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

showScaleBarCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

showWarningDialog() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

showWarnings - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

showWarnings() - Method in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit

showWarnings - Variable in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

SinglePositionPaintFactory - Interface in info.bioinfweb.treegraph.graphics.positionpaint

This interface should be implmeneted by all factory classes for view modes in TreeGraph 2.

SingleReadWriteFactory - Interface in info.bioinfweb.treegraph.document.io

SingletonGraphicsFactory - Class in info.bioinfweb.treegraph.graphics.export

SingletonGraphicsFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.SingletonGraphicsFactory

size() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

size() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument

size() - Method in class info.bioinfweb.treegraph.document.io.nexus.TranslTable

size() - Method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory

size() - Method in class info.bioinfweb.treegraph.document.LabelLine

size() - Method in class info.bioinfweb.treegraph.document.Legends

size() - Method in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.LeafList

size() - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory

size() - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterHints

size() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory

size() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel

sizeChanged(ChangeEvent) - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

sizeChanged(ChangeEvent) - Method in interface info.bioinfweb.treegraph.gui.treeframe.TreeViewPanelListener

slider - Variable in class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup

SMALL_FACTOR - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

The factor to calculate the length of the smallest dashes from the maximal length

SMALL_LENGTH - Static variable in interface info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerConstants

The width of a vertical or the height of a horizontal ruler in pixels

smallInterval - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

smallIntervalInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

sortAnchors(PositionPaintType) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

Sorts the anchors by the y-coordinates of their according terminal subnodes.

SOURCE_ADAPTER - Static variable in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

sourceComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorsFromNodeDataDialog

sourceLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorsFromNodeDataDialog

spaceAbove - Variable in class info.bioinfweb.treegraph.document.format.operate.MinSpaceAboveOperator

spaceAboveInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

spaceBelow - Variable in class info.bioinfweb.treegraph.document.format.operate.MinSpaceBelowOperator

spaceBelowInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

spacer - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

spacerLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

SPLASH_SCREEN_BORDER - Static variable in class info.bioinfweb.treegraph.Main

SPLASH_SCREEN_FONT - Static variable in class info.bioinfweb.treegraph.Main

SPLASH_SCREEN_FONT_COLOR - Static variable in class info.bioinfweb.treegraph.Main

src - Variable in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

srcInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog

srcLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog

START_MIN_SIZE - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

startApplication(String[]) - Method in class info.bioinfweb.treegraph.Main

startLeft - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

startMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

startPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

startUI() - Method in class info.bioinfweb.treegraph.cmd.CmdProcessor

state - Variable in class info.bioinfweb.treegraph.document.ContrastManager

STD_CONSTANT_WIDTH - Static variable in class info.bioinfweb.treegraph.document.format.BranchFormats

STD_EDGE_RADIUS_IN_MM - Static variable in interface info.bioinfweb.treegraph.document.format.EdgeRadiusFormats

STD_LEGEND_STYLE - Static variable in class info.bioinfweb.treegraph.document.format.LegendFormats

STD_MIN_LENGTH - Static variable in class info.bioinfweb.treegraph.document.format.BranchFormats

STD_MIN_SPACE_ABOVE - Static variable in class info.bioinfweb.treegraph.document.format.BranchFormats

STD_MIN_SPACE_BELOW - Static variable in class info.bioinfweb.treegraph.document.format.BranchFormats

STD_ORIENTATION - Static variable in class info.bioinfweb.treegraph.document.format.LegendFormats

STD_POSITION - Static variable in class info.bioinfweb.treegraph.document.format.LegendFormats

STREAM_ENCODING - Static variable in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter

string - Variable in class info.bioinfweb.treegraph.document.TextElementData

stringFormatterFactory - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

stringRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

style - Variable in class info.bioinfweb.treegraph.document.format.operate.LegendStyleOperator

style - Variable in class info.bioinfweb.treegraph.document.format.operate.TextStyleOperator

STYLE_BOLD - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

STYLE_BRACE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

STYLE_BRACKET - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

STYLE_ITALIC - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

STYLE_UNDERLINE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

styleGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

styleMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

subnodes - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit

SUBTREE_END - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

SUBTREE_START - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

subtreeRoot - Variable in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard

SUPPORT_DECIMAL_FORMAT - Static variable in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

SUPPORT_NAME - Static variable in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

supportAdapter - Variable in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

SupportedFormatsFilter - Class in info.bioinfweb.treegraph.document.io

SupportedFormatsFilter() - Constructor for class info.bioinfweb.treegraph.document.io.SupportedFormatsFilter

SVGFactory - Class in info.bioinfweb.treegraph.graphics.export.svg

SVGFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.svg.SVGFactory

SVGFilter - Class in info.bioinfweb.treegraph.graphics.export.svg

SVGFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.svg.SVGFilter

SVGTranscodeWriter - Class in info.bioinfweb.treegraph.graphics.export

This class generates an image file from a tree document.

SVGTranscodeWriter(Class<? extends Transcoder>) - Constructor for class info.bioinfweb.treegraph.graphics.export.SVGTranscodeWriter

SVGWriter - Class in info.bioinfweb.treegraph.graphics.export.svg

SVGWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.svg.SVGWriter