A B C D E F G H I J K L M N O P Q R S T U V W X Z

E

edgeRadius - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats

edgeRadius - Variable in class info.bioinfweb.treegraph.document.format.NodeFormats

edgeRadius - Variable in class info.bioinfweb.treegraph.document.format.operate.EdgeRadiusOperator

edgeRadius - Variable in class info.bioinfweb.treegraph.document.io.tgf.TGFReader

EdgeRadiusElement - Interface in info.bioinfweb.treegraph.document

EdgeRadiusFormats - Interface in info.bioinfweb.treegraph.document.format

edgeRadiusInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

EdgeRadiusOperator - Class in info.bioinfweb.treegraph.document.format.operate

EdgeRadiusOperator(DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.operate.EdgeRadiusOperator

EditBranchLengthAction - Class in info.bioinfweb.treegraph.gui.actions.edit

EditBranchLengthAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditBranchLengthAction

EditBranchLengthDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement

EditBranchLengthDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog

EditBranchNodeDataAction - Class in info.bioinfweb.treegraph.gui.actions.edit

EditBranchNodeDataAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditBranchNodeDataAction

editButtonsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

EditDialog - Class in info.bioinfweb.treegraph.gui.dialogs

EditDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.EditDialog

EditDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.EditDialog

EditDialogAction - Class in info.bioinfweb.treegraph.gui.actions

Superclass for all actions that display a dialog.

EditDialogAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.EditDialogAction

EditElementFormatsAction - Class in info.bioinfweb.treegraph.gui.actions.format

EditElementFormatsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.EditElementFormatsAction

editFormatsGBC - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel

EditGlobalFormatsAction - Class in info.bioinfweb.treegraph.gui.actions.format

EditGlobalFormatsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.EditGlobalFormatsAction

editLegends() - Method in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit

editMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

EditNodeBranchDataEdit - Class in info.bioinfweb.treegraph.document.undo.edit

EditNodeBranchDataEdit(Document, Node) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit

edits - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

editSubtreeLegends(Node) - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit

This method can be used to adopt the legends of a document prior to deleting a subtree.

EditTextElementAction - Class in info.bioinfweb.treegraph.gui.actions.edit

EditTextElementAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditTextElementAction

EditTextElementDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement

EditTextElementDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog

element - Variable in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit

ELEMENT_SEPERATOR - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

ElementFormats - Interface in info.bioinfweb.treegraph.document.format

This interface should be implemented by all classes the represent formats of a PaintableElement.

ElementFormatsDialog - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

ElementFormatsDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog

ElementFormatTab - Interface in info.bioinfweb.treegraph.gui.dialogs.elementformats

elements - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

elements - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

elementToPosition(Document, float, float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

Determines the element to a position defined by x- and y-coordinates (e.g. to select an element by mouse).

elementToPosition(Document, float, float, float) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.TreePositioner

Return the SelectableElement of the tree in which the given coordinates are located.

EMFFactory - Class in info.bioinfweb.treegraph.graphics.export.emf

EMFFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFFactory

EMFFilter - Class in info.bioinfweb.treegraph.graphics.export.emf

EMFFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter

EMFWriter - Class in info.bioinfweb.treegraph.graphics.export.emf

EMFWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFWriter

EMPTY_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

ENCLOSED_NAME_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

encloseSubnodes(Node, boolean) - Static method in class info.bioinfweb.treegraph.document.NodeLadderizeComparable

Encloses all direct subelements of root with a NodeLadderizeComparable- object and adds this objects to an array that is returned.

endRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

ensureContrast(Document, Node) - Method in class info.bioinfweb.treegraph.document.ContrastManager

Checks the colors of all elements in the subtree under root (including root and its afferent branch) regarding to their contrast to the background color of the document.

ensureContrast(Document, TextLabel) - Method in class info.bioinfweb.treegraph.document.ContrastManager

Checks the text color of the specified label regarding to its contrast to the background color of the document.

ensureContrast(Document, TextLabel[]) - Method in class info.bioinfweb.treegraph.document.ContrastManager

Checks the text color of the specified labels regarding to their contrast to the background color of the document.

ensureContrast(Document, Legend) - Method in class info.bioinfweb.treegraph.document.ContrastManager

Checks the text color of the specified legend regarding to its contrast to the background color of the document.

ensureLabelBlock(Labels, boolean, Color, Color) - Method in class info.bioinfweb.treegraph.document.ContrastManager

ensureLabelContrast(Document, TextLabel) - Method in class info.bioinfweb.treegraph.document.ContrastManager

Internal method which does not set state = State.UNDEFINED.

ensureSubtreeContrast(Document, Node) - Method in class info.bioinfweb.treegraph.document.ContrastManager

Rekursive method which contains the actual implementation.

entries - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel

entrySet() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

equals(Object) - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension

equals(Object) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue

equals(Object) - Method in class info.bioinfweb.treegraph.document.format.Margin

equals(Object) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

error - Variable in exception info.bioinfweb.treegraph.document.io.nexus.NexusException

ERROR_URL - Static variable in class info.bioinfweb.treegraph.Main

errorReporter - Variable in class info.bioinfweb.treegraph.Main

examplePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

execute(int, Tree) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog

execute(Document, TreeSelection) - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog

execute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

execute(DistanceValue, DistanceValue, float) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

execute(Document) - Method in class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog

executeDialog(EditDialog) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

executeEdit(DocumentEdit) - Method in class info.bioinfweb.treegraph.document.Document

ExitAction - Class in info.bioinfweb.treegraph.gui.actions.file

ExitAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExitAction

ExpCalculator - Class in info.bioinfweb.treegraph.gui.dialogs.datatable.math

ExpCalculator(double) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.math.ExpCalculator

exponent - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.math.PowerCalculator

EXPORT_FILE_EXT - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

exportButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

exportDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

ExportNodeDataDialog - Class in info.bioinfweb.treegraph.gui.dialogs.datatable

ExportNodeDataDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

ExportNodeDataTableModel - Class in info.bioinfweb.treegraph.gui.dialogs.datatable

ExportNodeDataTableModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel

ExportToGraphicAction - Class in info.bioinfweb.treegraph.gui.actions.file

ExportToGraphicAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction

ExportToGraphicDialog - Class in info.bioinfweb.treegraph.gui.dialogs.exporttographic

ExportToGraphicDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

ExportToNewickNexusAction - Class in info.bioinfweb.treegraph.gui.actions.file

ExportToNewickNexusAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToNewickNexusAction

ExportToNewickStringDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io

ExportToNewickStringDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

expValuesButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.tgf.TGFFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.xtg.XTGFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.png.PNGFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.svg.SVGFilter

EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter

EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickFilter

EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusFilter

EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.SupportedFormatsFilter