Serialized Form

Package info.bioinfweb.treegraph.document.clipboard

Class info.bioinfweb.treegraph.document.clipboard.TreeClipboardException extends java.lang.RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.format.operate

Class info.bioinfweb.treegraph.document.format.operate.InvalidTargetException extends java.lang.RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.io

Class info.bioinfweb.treegraph.document.io.ReadWriteFactoryException extends java.lang.RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.io.newick

Class info.bioinfweb.treegraph.document.io.newick.NewickException extends java.lang.RuntimeException implements Serializable

serialVersionUID: 1L

Serialized Fields

position

int position

Package info.bioinfweb.treegraph.document.io.nexus

Class info.bioinfweb.treegraph.document.io.nexus.NexusException extends java.lang.RuntimeException implements Serializable

Serialized Fields

error

NexusError error

Package info.bioinfweb.treegraph.document.nodedata

Class info.bioinfweb.treegraph.document.nodedata.NodeDataActionNotSupportedException extends java.lang.RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.undo.edit

Class info.bioinfweb.treegraph.document.undo.edit.InvalidFormatException extends java.lang.Exception implements Serializable

Package info.bioinfweb.treegraph.gui.actions

Class info.bioinfweb.treegraph.gui.actions.DocumentAction extends TreeGraphAction implements Serializable

Serialized Fields

mainFrame

MainFrame mainFrame

Class info.bioinfweb.treegraph.gui.actions.EditDialogAction extends DocumentAction implements Serializable

Serialized Fields

dialog

EditDialog dialog

Class info.bioinfweb.treegraph.gui.actions.TreeGraphAction extends javax.swing.AbstractAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.edit

Class info.bioinfweb.treegraph.gui.actions.edit.ApplyNameTableAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.AssignLabelIDsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.ChangeLabelIDAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CollapseNodeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CopyAllLabelsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CopyElementAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CutAction extends CopyElementAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditBranchLengthAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditBranchNodeDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditTextElementAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction extends DocumentAction implements Serializable

Serialized Fields

down

boolean down

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeDownAction extends LadderizeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeUpAction extends LadderizeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeDownAction extends MoveSubtreeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeUpAction extends MoveSubtreeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewLegendAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewNodeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewTextLabelAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.PasteAction extends DocumentAction implements Serializable

Serialized Fields

contrastManager

ContrastManager contrastManager

Class info.bioinfweb.treegraph.gui.actions.edit.RedoAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.RerootAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction extends DocumentAction implements Serializable

Serialized Fields

dialog

SearchTextDialog dialog

selection

TreeSelection selection

wordPattern

java.util.regex.Pattern wordPattern

Class info.bioinfweb.treegraph.gui.actions.edit.SeparateBranchAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.UndoAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.file

Class info.bioinfweb.treegraph.gui.actions.file.AddSupportValuesAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.CloseAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ExitAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction extends DocumentAction implements Serializable

Serialized Fields

dialog

ExportToGraphicDialog dialog

Class info.bioinfweb.treegraph.gui.actions.file.ExportToNewickNexusAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.NewDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.OpenAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.SaveAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.SaveAsAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.format

Class info.bioinfweb.treegraph.gui.actions.format.BranchWidthsFromNodeDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ColorsFromNodeDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.EditElementFormatsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.EditGlobalFormatsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ReanchorLegendAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ShowHideScaleBarAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ShowRootedAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.help

Class info.bioinfweb.treegraph.gui.actions.help.AboutAction extends TreeGraphAction implements Serializable

Serialized Fields

dialog

AboutDialog dialog

Class info.bioinfweb.treegraph.gui.actions.help.HelpAboutMenuAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpContentsAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpMainPageAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpTopicAction extends TreeGraphAction implements Serializable

Serialized Fields

topic

int topic

Package info.bioinfweb.treegraph.gui.actions.select

Class info.bioinfweb.treegraph.gui.actions.select.SelectAllAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsInSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsWithIDAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsWithPosIndexAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInSubtreeAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.view

Class info.bioinfweb.treegraph.gui.actions.view.ChangePainterIDAction extends DocumentAction implements Serializable

Serialized Fields

type

PositionPaintType type

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToHeightAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthHeightAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetUserZoomAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetZoomAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetZoomToOriginalAction extends SetZoomAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.window

Class info.bioinfweb.treegraph.gui.actions.window.CascadeAction extends TreeGraphAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.NextDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.PreviousDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.SelectFrameAction extends TreeGraphAction implements Serializable

Serialized Fields

frame

javax.swing.JInternalFrame frame

Class info.bioinfweb.treegraph.gui.actions.window.TileHorizontalAction extends TreeGraphAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.TileVerticalAction extends TreeGraphAction implements Serializable

Package info.bioinfweb.treegraph.gui.dialogs

Class info.bioinfweb.treegraph.gui.dialogs.AboutDialog extends javax.swing.JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

contentsTabbedPane

javax.swing.JTabbedPane contentsTabbedPane

generalPanel

javax.swing.JPanel generalPanel

gplPanel

javax.swing.JPanel gplPanel

apachePanel

javax.swing.JPanel apachePanel

batikLabel

javax.swing.JLabel batikLabel

buttonPanel

javax.swing.JPanel buttonPanel

closeButton

javax.swing.JButton closeButton

apacheTextArea

javax.swing.JEditorPane apacheTextArea

apacheScrollPane

javax.swing.JScrollPane apacheScrollPane

gplScrollPane

javax.swing.JScrollPane gplScrollPane

gplEditorPane

javax.swing.JEditorPane gplEditorPane

infoLabel

javax.swing.JLabel infoLabel

licenceLabel

javax.swing.JLabel licenceLabel

copyrightLabel

javax.swing.JLabel copyrightLabel

Class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

fileChooser

javax.swing.JFileChooser fileChooser

separatorPanel

javax.swing.JPanel separatorPanel

nodeDataPanel

javax.swing.JPanel nodeDataPanel

tabRadioButton

javax.swing.JRadioButton tabRadioButton

stringRadioButton

javax.swing.JRadioButton stringRadioButton

separatorTextField

javax.swing.JTextField separatorTextField

separatorGroup

javax.swing.ButtonGroup separatorGroup

adapterComboBox

javax.swing.JComboBox adapterComboBox

fileChooserPanel

javax.swing.JPanel fileChooserPanel

whitespaceCheckBox

javax.swing.JCheckBox whitespaceCheckBox

parseNumericValuesCheckBox

javax.swing.JCheckBox parseNumericValuesCheckBox

caseSensitiveCheckBox

javax.swing.JCheckBox caseSensitiveCheckBox

nodeDataLabel

javax.swing.JLabel nodeDataLabel

Class info.bioinfweb.treegraph.gui.dialogs.BranchWidthFromNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

inputPanel

javax.swing.JPanel inputPanel

nodeDataLabel

javax.swing.JLabel nodeDataLabel

nodeDataComboBox

javax.swing.JComboBox nodeDataComboBox

minWidthInput

DistanceValueInput minWidthInput

maxWidthInput

DistanceValueInput maxWidthInput

changeUndefinedCheckBox

javax.swing.JCheckBox changeUndefinedCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.EditDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

Serialized Fields

document

Document document

selection

TreeSelection selection

Class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

formatsTabbedPane

javax.swing.JTabbedPane formatsTabbedPane

documentPanel

javax.swing.JPanel documentPanel

branchLabelPanel

javax.swing.JPanel branchLabelPanel

nodePanel

javax.swing.JPanel nodePanel

legendPanel

javax.swing.JPanel legendPanel

documentMarginInput

MarginInput documentMarginInput

labelBlockMarginInput

MarginInput labelBlockMarginInput

branchLengthScaleInput

DistanceValueInput branchLengthScaleInput

horizontalLabelSpacingInput

DistanceValueInput horizontalLabelSpacingInput

verticalLabelSpacingInput

DistanceValueInput verticalLabelSpacingInput

labelBlockDistanceInput

DistanceValueInput labelBlockDistanceInput

nodeMarginInput

MarginInput nodeMarginInput

leafMarginInput

MarginInput leafMarginInput

legendMarginInput

MarginInput legendMarginInput

legendSpacingInput

DistanceValueInput legendSpacingInput

colorChooser

javax.swing.JColorChooser colorChooser

showRootedCheckBox

javax.swing.JCheckBox showRootedCheckBox

showScaleBarCheckBox

javax.swing.JCheckBox showScaleBarCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.LabelIDComboBox extends javax.swing.JComboBox implements Serializable

Class info.bioinfweb.treegraph.gui.dialogs.RenameIDDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

document

Document document

oldNames

java.lang.String[] oldNames

jContentPane

javax.swing.JPanel jContentPane

labelIDPanel

javax.swing.JPanel labelIDPanel

newNameTextField

javax.swing.JTextField newNameTextField

renameButton

javax.swing.JButton renameButton

idList

javax.swing.JList idList

Class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

replacePanel

javax.swing.JPanel replacePanel

nodeDataLabel

javax.swing.JLabel nodeDataLabel

adapterComboBox

javax.swing.JComboBox adapterComboBox

replaceLabel

javax.swing.JLabel replaceLabel

replaceTextField

javax.swing.JTextField replaceTextField

positionPanel

javax.swing.JPanel positionPanel

beginningRadioButton

javax.swing.JRadioButton beginningRadioButton

endRadioButton

javax.swing.JRadioButton endRadioButton

replaceRadioButton

javax.swing.JRadioButton replaceRadioButton

replaceTextLabel

javax.swing.JLabel replaceTextLabel

findTextField

javax.swing.JTextField findTextField

insertGroup

javax.swing.ButtonGroup insertGroup

caseSensitiveCheckBox

javax.swing.JCheckBox caseSensitiveCheckBox

wordsOnlyCheckBox

javax.swing.JCheckBox wordsOnlyCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

searchPanel

javax.swing.JPanel searchPanel

searchTextField

javax.swing.JTextField searchTextField

caseSensitiveCheckBox

javax.swing.JCheckBox caseSensitiveCheckBox

includeHiddenCheckBox

javax.swing.JCheckBox includeHiddenCheckBox

wordsOnlyCheckBox

javax.swing.JCheckBox wordsOnlyCheckBox

Package info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth

Class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorPreviewPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

minColor

java.awt.Color minColor

maxColor

java.awt.Color maxColor

Class info.bioinfweb.treegraph.gui.dialogs.colorfrombranchwidth.ColorsFromNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

self

ColorsFromNodeDataDialog self

This field is necessary to acces this intance from the action listeners.

jContentPane

javax.swing.JPanel jContentPane

inputPanel

javax.swing.JPanel inputPanel

sourceLabel

javax.swing.JLabel sourceLabel

sourceComboBox

javax.swing.JComboBox sourceComboBox

colorPanel

javax.swing.JPanel colorPanel

minColorButton

javax.swing.JButton minColorButton

colorPreviewPanel

ColorPreviewPanel colorPreviewPanel

maxColorButton

javax.swing.JButton maxColorButton

changeUndefinedCheckBox

javax.swing.JCheckBox changeUndefinedCheckBox

Package info.bioinfweb.treegraph.gui.dialogs.datatable

Class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

importPanel

javax.swing.JPanel importPanel

typeLabel

javax.swing.JLabel typeLabel

idLabel

javax.swing.JLabel idLabel

inputs

java.util.Vector<E> inputs

firstLineLabel

javax.swing.JLabel firstLineLabel

uniqueNamesLabel

javax.swing.JLabel uniqueNamesLabel

Class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

copyPanel

javax.swing.JPanel copyPanel

srcLabel

javax.swing.JLabel srcLabel

srcInput

NodeDataInput srcInput

destLabel

javax.swing.JLabel destLabel

labelIDLabel

javax.swing.JLabel labelIDLabel

destInput

NewNodeDataInput destInput

includeLeafsCheckBox

javax.swing.JCheckBox includeLeafsCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

self

DataTableDialog self

exportDialog

ExportNodeDataDialog exportDialog

fileChooser

javax.swing.JFileChooser fileChooser

assignImportDialog

AssignImportColumnsDialog assignImportDialog

copyDialog

CopyNodeDataDialog copyDialog

decimalInputDialog

info.webinsel.util.swing.DecimalInputDialog decimalInputDialog

nameTableDialog

ApplyNameTableDialog nameTableDialog

replaceDialog

ReplaceInNodeDataDialog replaceDialog

renameIDDialog

RenameIDDialog renameIDDialog

jContentPane

javax.swing.JPanel jContentPane

editButtonsPanel

javax.swing.JPanel editButtonsPanel

deleteButton

javax.swing.JButton deleteButton

copyButton

javax.swing.JButton copyButton

importButton

javax.swing.JButton importButton

exportButton

javax.swing.JButton exportButton

addToValuesButton

javax.swing.JButton addToValuesButton

multiplyValuesButton

javax.swing.JButton multiplyValuesButton

dataSplitPane

javax.swing.JSplitPane dataSplitPane

treeViewPanel

TreeViewPanel treeViewPanel

tableScrollPane

javax.swing.JScrollPane tableScrollPane

table

javax.swing.JTable table

treeScrollPane

javax.swing.JScrollPane treeScrollPane

applyNameTableButton

javax.swing.JButton applyNameTableButton

renameIDButton

javax.swing.JButton renameIDButton

logValuesButton

javax.swing.JButton logValuesButton

expValuesButton

javax.swing.JButton expValuesButton

raiseToButton

javax.swing.JButton raiseToButton

replaceButton

javax.swing.JButton replaceButton

setDecimalToAllButton

javax.swing.JButton setDecimalToAllButton

setTextToAllButton

javax.swing.JButton setTextToAllButton

Class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

nodeDataPanel

javax.swing.JPanel nodeDataPanel

nodeDataInput

NodeDataInput nodeDataInput

tableScrollPane

javax.swing.JScrollPane tableScrollPane

table

javax.swing.JTable table

nodeDataButtonsPanel

javax.swing.JPanel nodeDataButtonsPanel

addButton

javax.swing.JButton addButton

replaceButton

javax.swing.JButton replaceButton

removeButton

javax.swing.JButton removeButton

clearButton

javax.swing.JButton clearButton

upButton

javax.swing.JButton upButton

downButton

javax.swing.JButton downButton

filePanel

javax.swing.JPanel filePanel

fileTextField

javax.swing.JTextField fileTextField

fileButton

javax.swing.JButton fileButton

fileChooser

javax.swing.JFileChooser fileChooser

Class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

adapters

java.util.Vector<E> adapters

Class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

adapters

java.util.Vector<E> adapters

nodes

java.util.Vector<E> nodes

document

Document document

Package info.bioinfweb.treegraph.gui.dialogs.editelement

Class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog extends EditDialog implements Serializable

Serialized Fields

textElement

TextElement textElement

valuesPanel

javax.swing.JPanel valuesPanel

textLabel

javax.swing.JLabel textLabel

valueTextField

javax.swing.JFormattedTextField valueTextField

stringFormatterFactory

javax.swing.JFormattedTextField.AbstractFormatterFactory stringFormatterFactory

decimalFormatterFactory

javax.swing.JFormattedTextField.AbstractFormatterFactory decimalFormatterFactory

decimalCheckBox

javax.swing.JCheckBox decimalCheckBox

previewPanel

javax.swing.JPanel previewPanel

previewLabel

javax.swing.JLabel previewLabel

Class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

idPanel

javax.swing.JPanel idPanel

idComboBox

javax.swing.JComboBox idComboBox

Class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

inputPanel

javax.swing.JPanel inputPanel

decimalInput

info.webinsel.util.swing.DecimalInput decimalInput

hasLengthCheckBox

javax.swing.JCheckBox hasLengthCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog extends AbstractTextElementDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

Class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog extends AbstractTextElementDialog implements Serializable

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

idPanel

javax.swing.JPanel idPanel

idComboBox

javax.swing.JComboBox idComboBox

Package info.bioinfweb.treegraph.gui.dialogs.elementformats

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

minLengthInput

DistanceValueInput minLengthInput

spaceAboveInput

DistanceValueInput spaceAboveInput

spaceBelowInput

DistanceValueInput spaceBelowInput

spacer

javax.swing.JLabel spacer

constantWidthCheckBox

javax.swing.JCheckBox constantWidthCheckBox

constantWidthMonitor

info.webinsel.util.ChangeMonitor constantWidthMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

formatPanel

javax.swing.JPanel formatPanel

examplePanel

javax.swing.JPanel examplePanel

formatLabel

javax.swing.JLabel formatLabel

formatTextField

javax.swing.JTextField formatTextField

predifinedTable

javax.swing.JTable predifinedTable

localeComboBox

javax.swing.JComboBox localeComboBox

localeLabel

javax.swing.JLabel localeLabel

changeMonitor

info.webinsel.util.swing.SwingChangeMonitor changeMonitor

tableScrollPane

javax.swing.JScrollPane tableScrollPane

positiveExampleLabel

javax.swing.JLabel positiveExampleLabel

negativeExampleLabel

javax.swing.JLabel negativeExampleLabel

hintLabel

javax.swing.JLabel hintLabel

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

entries

java.util.Vector<E> entries

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

formatsTabbedPane

javax.swing.JTabbedPane formatsTabbedPane

tabs

java.util.Vector<E> tabs

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel extends javax.swing.JColorChooser implements Serializable

serialVersionUID: 1L

Serialized Fields

colorMonitor

info.webinsel.util.swing.SwingChangeMonitor colorMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

fontFamilyPanel

javax.swing.JPanel fontFamilyPanel

fontStylePanel

javax.swing.JPanel fontStylePanel

fontHeightPanel

javax.swing.JPanel fontHeightPanel

previewPanel

javax.swing.JPanel previewPanel

boldCheckBox

javax.swing.JCheckBox boldCheckBox

italicCheckBox

javax.swing.JCheckBox italicCheckBox

underlineCheckBox

javax.swing.JCheckBox underlineCheckBox

fontHeightInput

DistanceValueInput fontHeightInput

previewTextField

javax.swing.JTextField previewTextField

fontFamilyList

javax.swing.JList fontFamilyList

fontFamilyTextField

javax.swing.JTextField fontFamilyTextField

fontFamilyMonitor

info.webinsel.util.swing.SwingChangeMonitor fontFamilyMonitor

boldMonitor

info.webinsel.util.ChangeMonitor boldMonitor

italicMonitor

info.webinsel.util.ChangeMonitor italicMonitor

underlineMonitor

info.webinsel.util.ChangeMonitor underlineMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

decimalFormat

java.text.DecimalFormat decimalFormat

aboveRadioButton

javax.swing.JRadioButton aboveRadioButton

belowRadioButton

javax.swing.JRadioButton belowRadioButton

lineNoLabel

javax.swing.JLabel lineNoLabel

lineNoTextField

javax.swing.JFormattedTextField lineNoTextField

linePosLabel

javax.swing.JLabel linePosLabel

linePosTextField

javax.swing.JFormattedTextField linePosTextField

aboveBelowGroup

javax.swing.ButtonGroup aboveBelowGroup

aboveMonitor

info.webinsel.util.swing.SwingChangeMonitor aboveMonitor

lineNoMonitor

info.webinsel.util.swing.SwingChangeMonitor lineNoMonitor

linePosMonitor

info.webinsel.util.swing.SwingChangeMonitor linePosMonitor

aboveBelowPanel

javax.swing.JPanel aboveBelowPanel

labelNumbersPanel

javax.swing.JPanel labelNumbersPanel

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

decimalFormat

java.text.DecimalFormat decimalFormat

legendStylePanel

javax.swing.JPanel legendStylePanel

bracketRadioButton

javax.swing.JRadioButton bracketRadioButton

braceRadioButton

javax.swing.JRadioButton braceRadioButton

legendOrientationPanel

javax.swing.JPanel legendOrientationPanel

horizontalRadioButton

javax.swing.JRadioButton horizontalRadioButton

upRadioButton

javax.swing.JRadioButton upRadioButton

downRadioButton

javax.swing.JRadioButton downRadioButton

styleGroup

javax.swing.ButtonGroup styleGroup

orientationGroup

javax.swing.ButtonGroup orientationGroup

styleMonitor

info.webinsel.util.swing.SwingChangeMonitor styleMonitor

orientationMonitor

info.webinsel.util.swing.SwingChangeMonitor orientationMonitor

legendNumbersPanel

javax.swing.JPanel legendNumbersPanel

legendPositionTextField

javax.swing.JFormattedTextField legendPositionTextField

legendPositionMonitor

info.webinsel.util.swing.SwingChangeMonitor legendPositionMonitor

minTreeDistanceInput

DistanceValueInput minTreeDistanceInput

legendOrderLabel

javax.swing.JLabel legendOrderLabel

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

colorChooser

javax.swing.JColorChooser colorChooser

colorMonitor

info.webinsel.util.swing.SwingChangeMonitor colorMonitor

lineColorPanel

javax.swing.JPanel lineColorPanel

otherLineFormatsPanel

javax.swing.JPanel otherLineFormatsPanel

lineWidthInput

DistanceValueInput lineWidthInput

edgeRadiusInput

DistanceValueInput edgeRadiusInput

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

owner

ElementFormatsDialog owner

alignmentPanel

javax.swing.JPanel alignmentPanel

leftRadioButton

javax.swing.JRadioButton leftRadioButton

rightRadioButton

javax.swing.JRadioButton rightRadioButton

treeWidthRadioButton

javax.swing.JRadioButton treeWidthRadioButton

alignGroup

javax.swing.ButtonGroup alignGroup

alignMonitor

info.webinsel.util.swing.SwingChangeMonitor alignMonitor

increaseMonitor

info.webinsel.util.swing.SwingChangeMonitor increaseMonitor

startMonitor

info.webinsel.util.swing.SwingChangeMonitor startMonitor

IntervalPanel

javax.swing.JPanel IntervalPanel

treeDistanceInput

DistanceValueInput treeDistanceInput

widthInput

ScaleValueInput widthInput

heightInput

DistanceValueInput heightInput

smallIntervalInput

info.webinsel.util.swing.DecimalInput smallIntervalInput

longIntervalInput

info.webinsel.util.swing.DecimalInput longIntervalInput

dimensionsPanel

javax.swing.JPanel dimensionsPanel

startPanel

javax.swing.JPanel startPanel

zeroLeftRadioButton

javax.swing.JRadioButton zeroLeftRadioButton

zeroRightRadioButton

javax.swing.JRadioButton zeroRightRadioButton

zeroPosGroup

javax.swing.ButtonGroup zeroPosGroup

labelingPanel

javax.swing.JPanel labelingPanel

directionPanel

javax.swing.JPanel directionPanel

incRadioButton

javax.swing.JRadioButton incRadioButton

decRadioButton

javax.swing.JRadioButton decRadioButton

increaseGroup

javax.swing.ButtonGroup increaseGroup

Package info.bioinfweb.treegraph.gui.dialogs.exporttographic

Class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

dimensionsPanel

javax.swing.JPanel dimensionsPanel

resolutionInput

ResolutionInput resolutionInput

widthLabel

javax.swing.JLabel widthLabel

heightLabel

javax.swing.JLabel heightLabel

widthTextField

javax.swing.JTextField widthTextField

heightTextField

javax.swing.JTextField heightTextField

unitComboBox

javax.swing.JComboBox unitComboBox

spacerLabel

javax.swing.JLabel spacerLabel

fileChooser

javax.swing.JFileChooser fileChooser

fileChooserPanel

javax.swing.JPanel fileChooserPanel

outerPreferencesPanel

javax.swing.JPanel outerPreferencesPanel

lastSelection

int lastSelection

Used to convert the width and height values if their unit is changed by the user.

decimalFormat

java.text.DecimalFormat decimalFormat

aspectRatio

float aspectRatio

preferencesPanel

PreferencesPanel preferencesPanel

Class info.bioinfweb.treegraph.gui.dialogs.exporttographic.JPEGPrefPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

qualityLabel

javax.swing.JLabel qualityLabel

qualitySlider

javax.swing.JSlider qualitySlider

highestComprLabel

javax.swing.JLabel highestComprLabel

bestQualityLabel

javax.swing.JLabel bestQualityLabel

Class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TIFFPrefPanel extends TransparenrtBgPrefPanel implements Serializable

Serialized Fields

compressionMethodLabel

javax.swing.JLabel compressionMethodLabel

compressionMethodComboBox

javax.swing.JComboBox compressionMethodComboBox

Class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TransparenrtBgPrefPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

transparentCheckBox

javax.swing.JCheckBox transparentCheckBox

Package info.bioinfweb.treegraph.gui.dialogs.io

Class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

fileChooserPanel

javax.swing.JPanel fileChooserPanel

fileChooser

javax.swing.JFileChooser fileChooser

idNamePanel

javax.swing.JPanel idNamePanel

idNameTextField

javax.swing.JTextField idNameTextField

terminalDataInput

NodeDataInput terminalDataInput

prefixLabel

javax.swing.JLabel prefixLabel

targetTypePanel

javax.swing.JPanel targetTypePanel

labelRadioButton

javax.swing.JRadioButton labelRadioButton

branchDataRadioButton

javax.swing.JRadioButton branchDataRadioButton

nodeDataRadioButton

javax.swing.JRadioButton nodeDataRadioButton

terminalsPanel

javax.swing.JPanel terminalsPanel

terminalsLabel

javax.swing.JLabel terminalsLabel

buttonGroup

javax.swing.ButtonGroup buttonGroup

translateInternalsCheckBox

javax.swing.JCheckBox translateInternalsCheckBox

nexusFilter

NexusFilter nexusFilter

Class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

fileChooser

javax.swing.JFileChooser fileChooser

nexusFilter

NexusFilter nexusFilter

nodeDataPanel

javax.swing.JPanel nodeDataPanel

internalInput

NodeDataInput internalInput

leafInput

NodeDataInput leafInput

internalLabel

javax.swing.JLabel internalLabel

leafLabel

javax.swing.JLabel leafLabel

Class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

fileChooserPanel

javax.swing.JPanel fileChooserPanel

fileChooser

javax.swing.JFileChooser fileChooser

internalNodesPanel

javax.swing.JPanel internalNodesPanel

nodeDataInput

NewNodeDataInput nodeDataInput

translateInternalNodesCheckBox

javax.swing.JCheckBox translateInternalNodesCheckBox

xtgFilter

XTGFilter xtgFilter

nexusFilter

NexusFilter nexusFilter

Class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

trees

java.lang.String[] trees

translTable

TranslTable translTable

translateInternals

boolean translateInternals

currentTree

int currentTree

jContentPane

javax.swing.JPanel jContentPane

selectionPanel

javax.swing.JPanel selectionPanel

treeComboBox

javax.swing.JComboBox treeComboBox

previewPanel

javax.swing.JPanel previewPanel

previewScrollPane

javax.swing.JScrollPane previewScrollPane

treeViewPanel

TreeViewPanel treeViewPanel

Package info.bioinfweb.treegraph.gui.dialogs.nodedatainput

Class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel extends javax.swing.AbstractListModel implements Serializable

Serialized Fields

adapters

java.util.Vector<E> adapters

selected

NodeDataAdapter selected

Package info.bioinfweb.treegraph.gui.mainframe

Class info.bioinfweb.treegraph.gui.mainframe.MainFrame extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

actionManagement

ActionManagement actionManagement

windowListener

java.awt.event.WindowListener windowListener

mainMenu

javax.swing.JMenuBar mainMenu

fileMenu

javax.swing.JMenu fileMenu

editMenu

javax.swing.JMenu editMenu

viewMenu

javax.swing.JMenu viewMenu

helpMenu

javax.swing.JMenu helpMenu

jContentPane

javax.swing.JPanel jContentPane

desktopPane

info.webinsel.util.swing.ExtendedDesktopPane desktopPane

windowMenu

javax.swing.JMenu windowMenu

formatMenu

javax.swing.JMenu formatMenu

selectMenu

javax.swing.JMenu selectMenu

toolBarPanel

javax.swing.JPanel toolBarPanel

Class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

mainFrame

MainFrame mainFrame

orientation

ToolBarPanel.ToolBarOrientation orientation

upperToolBar

javax.swing.JToolBar upperToolBar

lowerToolBar

javax.swing.JToolBar lowerToolBar

editFormatsGBC

java.awt.GridBagConstraints editFormatsGBC

fileViewWindowGBC

java.awt.GridBagConstraints fileViewWindowGBC

Package info.bioinfweb.treegraph.gui.mainframe.tools

Class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup extends info.webinsel.util.swing.ToolBarPopup implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

javax.swing.JPanel jContentPane

input

DistanceValueInput input

slider

javax.swing.JSlider slider

Package info.bioinfweb.treegraph.gui.treeframe

Class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame extends javax.swing.JInternalFrame implements Serializable

Serialized Fields

document

Document document

internalFrameListener

javax.swing.event.InternalFrameListener internalFrameListener

jContentPane

javax.swing.JPanel jContentPane

scrollPane

javax.swing.JScrollPane scrollPane

treeViewPanel

TreeViewPanel treeViewPanel

treeViewInputListener

TreeEditlInputListener treeViewInputListener

Class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

selection

TreeSelection selection

document

Document document

zoom

float zoom

painterType

PositionPaintType painterType

treeViewListeners

java.util.Vector<E> treeViewListeners

Package info.bioinfweb.treegraph.gui.treeframe.ruler

Class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler extends javax.swing.JPanel implements Serializable

Serialized Fields

orientation

RulerOrientation orientation

unit

RulerUnit unit

treeViewPanel

TreeViewPanel treeViewPanel

Class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField extends javax.swing.JComponent implements Serializable

Serialized Fields

horizontalRuler

TreeViewRuler horizontalRuler

verticalRuler

TreeViewRuler verticalRuler