Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV LETTER NEXT LETTER | FRAMES NO FRAMES

A B C D E F G H I J K L M N O P Q R S T U V W X Z

## D

DASH_LENGTH - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
  The maximal length of a dash
data - Variable in class info.bioinfweb.treegraph.document.TextElement
DATA_COLUMN_WIDTH - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
dataSplitPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
DataTableDialog - Class in info.bioinfweb.treegraph.gui.dialogs.datatable
DataTableDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
decimal - Variable in class info.bioinfweb.treegraph.document.TextElementData
DECIMAL_COLUMN_WIDTH - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
DECIMAL_FORMAT - Variable in class info.bioinfweb.treegraph.document.nodedata.HiddenDataAdapter
decimalCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
decimalFormat - Variable in class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator
decimalFormat - Variable in class info.bioinfweb.treegraph.document.format.TextFormats
decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog
DecimalFormatOperator - Class in info.bioinfweb.treegraph.document.format.operate
  This operator is used to change the decimal format of a `TextFormats`-object.
DecimalFormatOperator(DecimalFormat, Locale) - Constructor for class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator
DecimalFormatPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats
DecimalFormatPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
  This is the default constructor
DecimalFormatsTableModel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats
DecimalFormatsTableModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
decimalFormatterFactory - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
decimalInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog
decimalInputDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodedata.BranchLengthAdapter
decimalOnly() - Method in interface info.bioinfweb.treegraph.document.nodedata.NodeDataAdapter
decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter
decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodedata.UniqueNameAdapter
DecimalUnitInput - Class in info.bioinfweb.treegraph.gui.dialogs
DecimalUnitInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DecimalUnitInput
decRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
DEFAULT_ADAPTER - Static variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
DEFAULT_ALIGNMENT - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_BACKGROUNG_COLOR - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_BRANCH_LENGTH_ID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
DEFAULT_BRANCH_LENGTH_SCALE - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_COMPRESSION_METHOD - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFWriter
DEFAULT_DECIMAL_FORMAT_EXPR - Static variable in class info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_FONT_NAME - Static variable in class info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_INCREASING - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_LABEL_BLOCK_DISTANCE_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_LEGEND_SPACING_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_LINE_COLOR - Static variable in interface info.bioinfweb.treegraph.document.format.LineFormats
DEFAULT_LINE_WIDTH_IN_MM - Static variable in interface info.bioinfweb.treegraph.document.format.LineFormats
DEFAULT_LONG_INTERVAL - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_LONGEST_PATH_LENGTH - Static variable in class info.bioinfweb.treegraph.document.Tree
  The default length of the longest path from the root to a leaf in millimeters.
DEFAULT_LOWER_BORDER - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.IntervalDialog
DEFAULT_MAX_COLOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorPreviewPanel
DEFAULT_MAX_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog
DEFAULT_MIN_COLOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorPreviewPanel
DEFAULT_MIN_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog
DEFAULT_NODE_NAME_ID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
DEFAULT_QUALITY - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGWriter
DEFAULT_SELECTION_COLOR - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
DEFAULT_SEPARATOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog
DEFAULT_SHOW_ROOTED - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_SHOW_SCALE_BAR - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_SMALL_INTERVAL - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_START_LEFT - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_TEXT_COLOR - Static variable in class info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.TextLabelFormats
DEFAULT_TREE_DISTANCE_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_TREE_VIEW_WIDTH - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
DEFAULT_UPPER_BORDER - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.IntervalDialog
DEFAULT_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
defaultDecimalFormat - Variable in class info.bioinfweb.treegraph.document.nodedata.LabelAdapter
DefaultTreeSelector - Class in info.bioinfweb.treegraph.document.io
  This `TreeSelector` always selects the first tree.
DefaultTreeSelector() - Constructor for class info.bioinfweb.treegraph.document.io.DefaultTreeSelector
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.BranchLengthAdapter
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.HiddenDataAdapter
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.LabelAdapter
delete(Node) - Method in interface info.bioinfweb.treegraph.document.nodedata.NodeDataAdapter
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.UniqueNameAdapter
deleteButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog
deleteColumn(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
DeleteEdit - Class in info.bioinfweb.treegraph.document.undo.edit
  Removes all elements currently selected.
DeleteEdit(Document, ConcretePaintableElement[], boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
DeleteElementAction - Class in info.bioinfweb.treegraph.gui.actions.edit
DeleteElementAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction
deleteLength() - Method in class info.bioinfweb.treegraph.document.Branch
deleteOutsideInterval(int, double, double) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
deleteOutsideIntervalSubtree(Node, NodeDataAdapter, double, double) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
DeleteSubelementsAction - Class in info.bioinfweb.treegraph.gui.actions.edit
DeleteSubelementsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction
DeleteSubelementsEdit - Class in info.bioinfweb.treegraph.document.undo.edit
DeleteSubelementsEdit(Document, Node, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit
deleteSubtree(Node, NodeDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
deleteSubtreeElements() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
delimited - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken
desktopPane - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
destInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog
destLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog
dialog - Variable in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction
dialog - Variable in class info.bioinfweb.treegraph.gui.actions.EditDialogAction
dialog - Variable in class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction
dialog - Variable in class info.bioinfweb.treegraph.gui.actions.help.AboutAction
DIALOG_HELP_TOPIC - Static variable in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit
die() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit
difAbove - Variable in class info.bioinfweb.treegraph.document.NodePositionData
difBelow - Variable in class info.bioinfweb.treegraph.document.NodePositionData
dimensionsInPixels() - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog
dimensionsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
dimensionsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog
directionPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
distance - Variable in class info.bioinfweb.treegraph.document.format.operate.MinTreeDistanceOperator
DistanceAdapter - Interface in info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.distanceadapters
DistanceAdapterListModel - Class in info.bioinfweb.treegraph.gui.dialogs.formatbynodedata
DistanceAdapterListModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceAdapterListModel
DistanceDimension - Class in info.bioinfweb.treegraph.document.format
DistanceDimension() - Constructor for class info.bioinfweb.treegraph.document.format.DistanceDimension
DistanceDimension(DistanceValue, DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.DistanceDimension
distancesPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog
DistanceValue - Class in info.bioinfweb.treegraph.document.format
  This class represents a distance in the document.
DistanceValue() - Constructor for class info.bioinfweb.treegraph.document.format.DistanceValue
DistanceValue(float) - Constructor for class info.bioinfweb.treegraph.document.format.DistanceValue
distanceValue - Variable in class info.bioinfweb.treegraph.document.format.ScaleValue
DistanceValueInput - Class in info.bioinfweb.treegraph.gui.dialogs
DistanceValueInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput
DistanceValuePopup - Class in info.bioinfweb.treegraph.gui.mainframe.tools
DistanceValuePopup(Frame) - Constructor for class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup
DistanceValuesByNodeBranchDataAction - Class in info.bioinfweb.treegraph.gui.actions.format
DistanceValuesByNodeBranchDataAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.DistanceValuesByNodeBranchDataAction
DistanceValuesByNodeBranchDataDialog - Class in info.bioinfweb.treegraph.gui.dialogs.formatbynodedata
DistanceValuesByNodeBranchDataDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog
DistanceValuesByNodeBranchDataEdit - Class in info.bioinfweb.treegraph.document.undo.format
DistanceValuesByNodeBranchDataEdit(Document, NodeDataAdapter, float, float, boolean, boolean, DistanceAdapter[]) - Constructor for class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.AbstractOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.ConstantWidthOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.EdgeRadiusOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.FontNameOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelAboveOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelLineNumberOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelLinePositionOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LegendPositionOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LegendStyleOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LineColorOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LineWidthOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinLengthOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinSpaceAboveOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinSpaceBelowOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinTreeDistanceOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.ScaleBarFormatsOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextColorOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextHeightOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextOrientationOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextStyleOperator
Document - Class in info.bioinfweb.treegraph.document
  Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Document() - Constructor for class info.bioinfweb.treegraph.document.Document
  Creates a new Instance of `Document` with a default name.
Document(String) - Constructor for class info.bioinfweb.treegraph.document.Document
  Creates a new Instance of `Document`.
Document(boolean) - Constructor for class info.bioinfweb.treegraph.document.Document
document - Variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader
document - Variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
document - Variable in class info.bioinfweb.treegraph.document.undo.DocumentEdit
document - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
document - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
document - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel
document - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.RenameIDDialog
document - Variable in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
document - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
document - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
DocumentAction - Class in info.bioinfweb.treegraph.gui.actions
  Implements basic functionality for all actions in TreeGraph 2 which are applied on opened documents.
DocumentAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.DocumentAction
DocumentEdit - Class in info.bioinfweb.treegraph.document.undo
DocumentEdit(Document) - Constructor for class info.bioinfweb.treegraph.document.undo.DocumentEdit
DocumentFilter - Interface in info.bioinfweb.treegraph.document.io
documentMargin - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
documentMarginInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
documentPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
DocumentReader - Interface in info.bioinfweb.treegraph.document.io
DocumentView - Interface in info.bioinfweb.treegraph.document
DocumentWriter - Interface in info.bioinfweb.treegraph.document.io
doDefaultCloseAction() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
doubleClick(MouseEvent, ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener
down - Variable in class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit
down - Variable in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit
down - Variable in class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction
downButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog
downRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
dX - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
dY - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV LETTER NEXT LETTER | FRAMES NO FRAMES

A B C D E F G H I J K L M N O P Q R S T U V W X Z