Constant Field Values

Contents

• info.bioinfweb.*

info.bioinfweb.*

info.bioinfweb.treegraph.Main

public static final String	ERROR_URL	"http://treegraph.bioinfweb.info/errorreport/ApplicationReport.jsp"
public static final int	SPLASH_SCREEN_BORDER	4
public static final String	TG_URL	"http://treegraph.bioinfweb.info/"
public static final String	WIKI_URL	"http://treegraph.bioinfweb.info/Help/"

info.bioinfweb.treegraph.cmd.CmdProcessor

public static final String	CONVERT_OPTION	"-convert"
public static final String	IMAGE_OPTION	"-image"
public static final String	VERSION_OPTION	"-version"

info.bioinfweb.treegraph.cmd.ImageGenerator

public static final String	CLADOGRAM_OPTION	"-clad"
public static final String	HEIGHT_OPTION	"-height"
public static final String	PHYLOGRAM_OPTION	"-phyl"
public static final String	RESOLUTION_OPTION	"-res"
public static final String	UNIT_MM	"mm"
public static final String	UNIT_PPI	"ppi"
public static final String	UNIT_PPM	"ppm"
public static final String	UNIT_PT	"pt"
public static final String	UNIT_PX	"px"
public static final String	WIDTH_OPTION	"-width"

info.bioinfweb.treegraph.document.Document

private static final int	VIEWS_CAPACITY	4
private static final int	VIEWS_CAPACITY_INCREMENT	4

info.bioinfweb.treegraph.document.IDManager

public static final String	RAND_CHARS	"ABCDEFGHIJKLMNOPQRSTUVWXYZ01234567890"
public static final int	RAND_LENGTH	12

info.bioinfweb.treegraph.document.LabelLine

private static final int	CAPACITY_INCREMENT	4
private static final int	INITIAL_CAPACITY	4

info.bioinfweb.treegraph.document.Labels

private static final int	CAPACITY_INCREMENT	2
private static final int	INITIAL_CAPACITY	2

info.bioinfweb.treegraph.document.Legends

private static final int	CAPACITY	4
private static final int	CAPACITY_INCREMENT	4

info.bioinfweb.treegraph.document.NodeLadderizeComparable

public static final String

CHILD_COUNT_KEY

"ladderizeChildCount"

info.bioinfweb.treegraph.document.Tree

public static final float	DEFAULT_LONGEST_PATH_LENGTH	150.0f
public static final String	UNIQUE_NAME_CHARS	"abcdefghijklmnopqrstuvwxyz01234567890"
public static final int	UNIQUE_NAME_LENGTH	10

info.bioinfweb.treegraph.document.format.BranchFormats

public static final boolean	STD_CONSTANT_WIDTH	false
public static final float	STD_MIN_LENGTH	4.0f
public static final float	STD_MIN_SPACE_ABOVE	0.0f
public static final float	STD_MIN_SPACE_BELOW	0.0f

info.bioinfweb.treegraph.document.format.DistanceValue

public static final float

POINTS_PER_MM

2.8346457481384277f

info.bioinfweb.treegraph.document.format.EdgeRadiusFormats

public static final float

STD_EDGE_RADIUS_IN_MM

1.0f

info.bioinfweb.treegraph.document.format.GlobalFormats

public static final float	DEFAULT_BRANCH_LENGTH_SCALE	0.10000000149011612f
public static final float	DEFAULT_LABEL_BLOCK_DISTANCE_IN_MM	0.6000000238418579f
public static final float	DEFAULT_LEGEND_SPACING_IN_MM	1.0f
public static final boolean	DEFAULT_SHOW_ROOTED	true
public static final boolean	DEFAULT_SHOW_SCALE_BAR	false

info.bioinfweb.treegraph.document.format.LegendFormats

public static final int

STD_POSITION

0

info.bioinfweb.treegraph.document.format.LineFormats

public static final float

DEFAULT_LINE_WIDTH_IN_MM

0.30000001192092896f

info.bioinfweb.treegraph.document.format.ScaleBarFormats

public static final float	DEFAULT_HEIGHT_IN_MM	3.0f
public static final boolean	DEFAULT_INCREASING	true
public static final int	DEFAULT_LONG_INTERVAL	10
public static final float	DEFAULT_SMALL_INTERVAL	10.0f
public static final boolean	DEFAULT_START_LEFT	true
public static final float	DEFAULT_TEXT_HEIGHT_IN_MM	4.0f
public static final float	DEFAULT_TREE_DISTANCE_IN_MM	2.0f
public static final float	DEFAULT_WIDTH_IN_MM	20.0f

info.bioinfweb.treegraph.document.format.TextFormats

public static final int	BOLD	1
public static final String	DEFAULT_DECIMAL_FORMAT_EXPR	"0.0#####"
public static final String	DEFAULT_FONT_NAME	"Arial"
public static final float	DEFAULT_TEXT_HEIGHT_IN_MM	6.0f
public static final int	ITALIC	2
public static final int	PLAIN	0
public static final int	UNDERLINE	4

info.bioinfweb.treegraph.document.format.TextLabelFormats

public static final float

DEFAULT_TEXT_HEIGHT_IN_MM

4.0f

info.bioinfweb.treegraph.document.io.newick.NewickException

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.document.io.newick.NewickStringChars

public static final char	COMMENT_END	93
public static final char	COMMENT_START	91
public static final char	ELEMENT_SEPERATOR	44
public static final char	FREE_NAME_BLANK	95
public static final char	LENGTH_SEPERATOR	58
public static final char	NAME_DELIMITER	39
public static final char	SUBTREE_END	41
public static final char	SUBTREE_START	40
public static final char	TERMINAL_SYMBOL	59

info.bioinfweb.treegraph.document.io.nexus.NexusParser

public static final char	COMMAND_SEPARATOR	59
public static final char	COMMENT_END	93
public static final char	COMMENT_START	91
public static final String	NAME_BLOCK_BEGIN	"begin"
public static final String	NAME_BLOCK_END	"end"
public static final char	NAME_DELIMITER	39
public static final String	NAME_NEXUS	"#nexus"
public static final String	NAME_TRANSL_TABLE	"translate"
public static final String	NAME_TREES	"trees"
public static final String	ROOTED_COMMAND	"[&r]"
public static final String	TREE_COMMAND	"tree"
public static final String	UNROOTED_COMMAND	"[&u]"

info.bioinfweb.treegraph.document.io.tgf.TGFFilter

public static final String

EXTENSION

".tgf"

info.bioinfweb.treegraph.document.io.tgf.TGFReader

private static final int

SECOUND_LINE_POS

100

info.bioinfweb.treegraph.document.io.xtg.XTGConstants

public static final String	ALIGN_LEFT	"left"
public static final String	ALIGN_RIGHT	"right"
public static final String	ALIGN_TREE_WIDTH	"treeWidth"
public static final String	BRANCH_LENGTH_UNITS	"u"
public static final String	MILLIMETERS	"mm"
public static final String	ORIENT_DOWN	"down"
public static final String	ORIENT_HORIZONTAL	"horizontal"
public static final String	ORIENT_UP	"up"
public static final String	PRE_LEGEND_ANCHOR	"Anchor"
public static final String	STYLE_BOLD	"b"
public static final String	STYLE_BRACE	"brace"
public static final String	STYLE_BRACKET	"bracket"
public static final String	STYLE_ITALIC	"i"
public static final String	STYLE_UNDERLINE	"u"

info.bioinfweb.treegraph.document.io.xtg.XTGFilter

public static final String	ALTERNATIVE_EXTENSION	".xml"
public static final String	EXTENSION	".xtg"

info.bioinfweb.treegraph.document.io.xtg.XTGWriter

public static final String

STREAM_ENCODING

"UTF8"

info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

public static final String	CONFLICT_NAME	"Conflict"
public static final int	MAX_TERMINAL_ERROR_COUNT	10
public static final String	SUPPORT_NAME	"Support"

info.bioinfweb.treegraph.document.undo.edit.RerootEdit

public static final int

DIALOG_HELP_TOPIC

24

info.bioinfweb.treegraph.graphics.export.GraphicWriter

public static final String	KEY_DIMENSIONS_IN_PIXELS	"dimensionsInPixels"
public static final String	KEY_HEIGHT	"height"
public static final String	KEY_PIXELS_PER_MILLIMETER	"ppm"
public static final String	KEY_TRANSPARENT	"transparent"
public static final String	KEY_WIDTH	"width"

info.bioinfweb.treegraph.graphics.export.emf.EMFFilter

public static final String

EXTENSION

".emf"

info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter

public static final String	ALTERNATIVE_EXTENSION_1	".jpg"
public static final String	ALTERNATIVE_EXTENSION_2	".jpe"
public static final String	EXTENSION	".jpeg"

info.bioinfweb.treegraph.graphics.export.jpeg.JPEGWriter

public static final float	DEFAULT_QUALITY	0.800000011920929f
public static final String	KEY_JPEG_QUALITY	"jpegCompression"
public static final float	MAX_QUALITY	1.0f
public static final float	MIN_QUALITY	0.009999999776482582f

info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter

public static final String

EXTENSION

".pdf"

info.bioinfweb.treegraph.graphics.export.png.PNGFilter

public static final String

EXTENSION

".png"

info.bioinfweb.treegraph.graphics.export.svg.SVGFilter

public static final String

EXTENSION

".svg"

info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter

public static final String	ALTERNATIVE_EXTENSION	".tif"
public static final String	EXTENSION	".tiff"

info.bioinfweb.treegraph.graphics.export.tiff.TIFFWriter

public static final String	DEFAULT_COMPRESSION_METHOD	"none"
public static final String	KEY_TIFF_COMPRESSION_METHOD	"tiffCompressionMethod"

info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

public static final float	SELECTION_DISTANCE	2.0f
public static final float	SHORT_DASH_SCALE_FACTOR	0.5f
public static final float	UNDERLINE_DISTANCE_FACTOR	0.15000000596046448f
public static final float	UNDERLINE_LINE_WIDTH_FACTOR	0.05000000074505806f
public static final float	UNDERLINE_X_SHIFT_FACTOR	0.07000000029802322f

info.bioinfweb.treegraph.gui.CurrentDirectoryModel

public static final String

CURRENT_DIR_PREF_KEY

"currentDir"

info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction

public static final String

TEXT

"Replace text in node data..."

info.bioinfweb.treegraph.gui.dialogs.AboutDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

public static final String	DEFAULT_SEPARATOR	";"
private static final long	serialVersionUID	1L

info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput

public static final String	UNIT_MILLIMETERS	"mm"
public static final String	UNIT_POINTS	"pt"

info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.ResolutionInput

public static final float	MM_PER_INCH	25.399999618530273f
public static final String	UNIT_PPI	"pixel per inch (ppi)"
public static final String	UNIT_PPMM	"pixel per mm"

info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog

private static final long	serialVersionUID	1L
private static final int	USED_ROWS	2

info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

public static final int	DATA_COLUMN_WIDTH	100
public static final int	DECIMAL_COLUMN_WIDTH	20
public static final int	DEFAULT_TREE_VIEW_WIDTH	150
public static final String	EXPORT_FILE_EXT	"txt"
private static final long	serialVersionUID	1L

info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.datatable.IntervalDialog

public static final double	DEFAULT_LOWER_BORDER	50.0
public static final double	DEFAULT_UPPER_BORDER	100.0
private static final long	serialVersionUID	1L

info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

public static final int	COL_BRANCH_LENGTH_DATA_TYPE	5
public static final int	COL_UNIQUE_NAME_DATA_TYPE	1

info.bioinfweb.treegraph.gui.dialogs.datatable.RenameIDDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

public static final double	FORMAT_EXAMPLE	1125024.87356218
private static final long	serialVersionUID	1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

private static final long	serialVersionUID	1L
private static final int	VISIBLE_ROW_COUNT	8

info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput

public static final String

UNIT_SCALE

"branch length units"

info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

private static final long	serialVersionUID	1L
public static final String	UNIT_MILLIMETERS	"mm"
public static final String	UNIT_PIXELS	"px"
public static final String	UNIT_POINTS	"pt"

info.bioinfweb.treegraph.gui.dialogs.exporttographic.JPEGPrefPanel

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.exporttographic.TransparenrtBgPrefPanel

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorsByNodeBranchDataDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog

public static final double	DEFAULT_MAX_WIDTH_IN_MM	5.0
public static final double	DEFAULT_MIN_WIDTH_IN_MM	0.0
private static final long	serialVersionUID	1L

info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

public static final String	DEFAULT_BRANCH_LENGTH_ID	"lengths"
public static final String	DEFAULT_NODE_NAME_ID	"support"
private static final long	serialVersionUID	1L

info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.mainframe.MainFrame

private static final long	serialVersionUID	1L
private static final int	WINDOW_MENU_ITEMS_COUNT	3

info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup

private static final long

serialVersionUID

1L

info.bioinfweb.treegraph.gui.treeframe.HelpButton

public static final int

TOPIC

34

info.bioinfweb.treegraph.gui.treeframe.info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener

public static final float

ZOOM_PER_CLICK

0.10000000149011612f

info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

public static final int	MAX_SELECTION_COLOR_DIF	200
public static final float	MIN_ZOOM	0.10000000149011612f
public static final float	PIXELS_PER_MM_100	2.8346457481384277f
public static final float	SELECTION_MARGIN	2.0f
private static final long	serialVersionUID	1L

info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

public static final float	DASH_LENGTH	10.0f
public static final float	LABEL_DISTANCE	-2.200000047683716f
public static final String	LABEL_LENGTH_STANDARD	"000"
public static final float	MEDIUM_FACTOR	0.800000011920929f
public static final float	MIN_DASH_DISTANCE	2.5f
public static final float	SMALL_FACTOR	0.5f

info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerConstants

public static final int

SMALL_LENGTH

20

info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField

public static final String	TEXT_CENTIMETER	"cm"
public static final String	TEXT_INCH	"in"