A B C D E F G H I J K L M N O P Q R S T U V W X Z

A

AboutAction - Class in info.bioinfweb.treegraph.gui.actions.help

AboutAction() - Constructor for class info.bioinfweb.treegraph.gui.actions.help.AboutAction

AboutDialog - Class in info.bioinfweb.treegraph.gui.dialogs

AboutDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

above - Variable in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

above - Variable in class info.bioinfweb.treegraph.document.format.operate.LabelAboveOperator

aboveBelowGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

aboveBelowPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

aboveMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

aboveRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

AbstractBranchOperator - Class in info.bioinfweb.treegraph.document.format.operate

AbstractBranchOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractBranchOperator

AbstractDocumentReader - Class in info.bioinfweb.treegraph.document.io

AbstractDocumentReader() - Constructor for class info.bioinfweb.treegraph.document.io.AbstractDocumentReader

AbstractDocumentWriter - Class in info.bioinfweb.treegraph.document.io

AbstractDocumentWriter() - Constructor for class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter

AbstractFilter - Class in info.bioinfweb.treegraph.document.io

AbstractFilter() - Constructor for class info.bioinfweb.treegraph.document.io.AbstractFilter

AbstractGraphicWriter - Class in info.bioinfweb.treegraph.graphics.export

AbstractGraphicWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.AbstractGraphicWriter

AbstractIDElementAdapter - Class in info.bioinfweb.treegraph.document.nodedata

Node data adapters that need to store an ID can be inherited from this abstract class.

AbstractIDElementAdapter(String) - Constructor for class info.bioinfweb.treegraph.document.nodedata.AbstractIDElementAdapter

AbstractLabelOperator - Class in info.bioinfweb.treegraph.document.format.operate

AbstractLabelOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractLabelOperator

AbstractLegendOperator - Class in info.bioinfweb.treegraph.document.format.operate

AbstractLegendOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractLegendOperator

AbstractLineOperator - Class in info.bioinfweb.treegraph.document.format.operate

AbstractLineOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractLineOperator

AbstractOperator - Class in info.bioinfweb.treegraph.document.format.operate

AbstractOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractOperator

AbstractTextElementDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement

AbstractTextElementDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

AbstractTextElementDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

AbstractTextOperator - Class in info.bioinfweb.treegraph.document.format.operate

AbstractTextOperator() - Constructor for class info.bioinfweb.treegraph.document.format.operate.AbstractTextOperator

accept(File) - Method in class info.bioinfweb.treegraph.document.io.AbstractFilter

accept(File) - Method in interface info.bioinfweb.treegraph.document.io.DocumentFilter

accept(File) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusFilter

ActionManagement - Class in info.bioinfweb.treegraph.gui.actions

This class organizes the action objects of TreeGraph.

ActionManagement(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.ActionManagement

actionManagement - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.DocumentAction

Determines the currently active internal frame and passes it to DocumentAction.onActionPerformed(ActionEvent, TreeInternalFrame).

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.file.NewDocumentAction

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.file.OpenAction

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.help.AboutAction

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.help.HelpTopicAction

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.help.HomepageAction

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.window.CascadeAction

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.window.SelectFrameAction

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.window.TileHorizontalAction

actionPerformed(ActionEvent) - Method in class info.bioinfweb.treegraph.gui.actions.window.TileVerticalAction

adapter - Variable in class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit

adapter - Variable in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit

adapter - Variable in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit

adapterComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

adapterComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

adapters - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel

adapters - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

adapters - Variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorAdapterListModel

adapters - Variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceAdapterListModel

adapters - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel

add(DistanceValue) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue

add(float) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue

Adds the specified value to the stored value in millimeters.

add(String, String) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument

add(String, String) - Method in class info.bioinfweb.treegraph.document.io.nexus.TranslTable

add(Label) - Method in class info.bioinfweb.treegraph.document.Labels

Adds a label to the List.

add(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.LeafList

add(AddSupportValuesEdit.LeafList) - Method in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.LeafList

add(NodeDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel

add(ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

addButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

AddCalculator - Class in info.bioinfweb.treegraph.gui.dialogs.datatable.math

Adds a value to the node data.

AddCalculator(double) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.math.AddCalculator

addEdit(UndoableEdit) - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit

addend - Variable in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit

addend - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.math.AddCalculator

addEntry(String, String) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel

addError(List<String>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

addError(List<String>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

addError(List<String>) - Method in interface info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatTab

Adds error messages to the given list, if this tab contains any invalid user inputs.

addError(List<String>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel

addError(List<String>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

addError(List<String>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

addError(List<String>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

addError(List<String>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

addError(List<String>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

addHints(GraphicWriterHints) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.JPEGPrefPanel

addHints(GraphicWriterHints) - Method in interface info.bioinfweb.treegraph.gui.dialogs.exporttographic.PreferencesPanel

This method should add the graphic writer hints that are specified by the components contained in the particular implementation

addHints(GraphicWriterHints) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TIFFPrefPanel

addHints(GraphicWriterHints) - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TransparenrtBgPrefPanel

addInputListener(NodeDataInputListener) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NewNodeDataInput

addInternalFrame(JInternalFrame) - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

addInternalFrame(Document) - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

addLabelBlock(Vector<PaintableElement>, boolean, boolean, Labels, boolean) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer

addLabelsWithID(Vector<Label>, Node, String) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer

addLeafReferences(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

Adds direkt references to all leaves of the subtree under root to the attribute map of root.

addNewAdapters() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel

addOperator(FormatOperator) - Method in class info.bioinfweb.treegraph.document.format.operate.OperatorMap

addOperators(List<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

addOperators(List<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

addOperators(List<FormatOperator>) - Method in interface info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatTab

addOperators(List<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel

addOperators(List<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

addOperators(List<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

addOperators(List<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

addOperators(List<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

addOperators(List<FormatOperator>) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

addSpacer(JPanel, int) - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

This method initializes this

addSubtree(Vector<PaintableElement>, Node, boolean, boolean, boolean, boolean, boolean) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer

AddSupportValuesAction - Class in info.bioinfweb.treegraph.gui.actions.file

AddSupportValuesAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.AddSupportValuesAction

AddSupportValuesDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io

AddSupportValuesDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

AddSupportValuesEdit - Class in info.bioinfweb.treegraph.document.undo.edit

AddSupportValuesEdit(Document, Document, NodeDataAdapter, AddSupportValuesEdit.TargetType, String, NodeDataAdapter) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit

AddSupportValuesEdit.LeafList - Class in info.bioinfweb.treegraph.document.undo.edit

AddSupportValuesEdit.LeafList() - Constructor for class info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.LeafList

AddSupportValuesEdit.TargetType - Enum in info.bioinfweb.treegraph.document.undo.edit

AddSupportValuesEdit.TargetType() - Constructor for enum info.bioinfweb.treegraph.document.undo.edit.AddSupportValuesEdit.TargetType

addTextStyle(int) - Method in class info.bioinfweb.treegraph.document.format.TextFormats

addToNode(NodeLadderizeComparable[], Node) - Static method in class info.bioinfweb.treegraph.document.NodeLadderizeComparable

This method is used to reinsert sorted elements in the a subtree.

addToValuesButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

addTranscodingHints(Transcoder, GraphicWriterHints) - Method in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGWriter

addTranscodingHints(Transcoder, GraphicWriterHints) - Method in class info.bioinfweb.treegraph.graphics.export.SVGTranscodeWriter

This method can be overwritten to add more transcoding hints to the transcoder.

addTranscodingHints(Transcoder, GraphicWriterHints) - Method in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFWriter

addTreeViewListener(TreeViewPanelListener) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

addView(DocumentView) - Method in class info.bioinfweb.treegraph.document.Document

afferentBranch - Variable in class info.bioinfweb.treegraph.document.Node

alertPositioners() - Method in class info.bioinfweb.treegraph.document.Document

Alerts all registered positioners to reposition the tree elements becuase of made changes.

ALIGN_LEFT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ALIGN_RIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ALIGN_TREE_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

alignGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

alignment - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

alignmentPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

alignMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

ALTERNATIVE_EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.xtg.XTGFilter

ALTERNATIVE_EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter

ALTERNATIVE_EXTENSION_1 - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter

ALTERNATIVE_EXTENSION_2 - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter

ALTERNATIVE_SELECTION_COLOR - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

anchor - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLegendEdit

anchorNames - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats

apachePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

apacheScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

apacheTextArea - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.IntervalDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.RenameIDDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorsByNodeBranchDataDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog

apply() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

applyElements - Variable in class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit

ApplyNameTableAction - Class in info.bioinfweb.treegraph.gui.actions.edit

ApplyNameTableAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.ApplyNameTableAction

applyNameTableButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

ApplyNameTableDialog - Class in info.bioinfweb.treegraph.gui.dialogs

ApplyNameTableDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

ApplyNameTableDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

ApplyNameTableEdit - Class in info.bioinfweb.treegraph.document.undo.edit

ApplyNameTableEdit(Document, NodeDataAdapter, List<String>, List<String>, boolean, boolean, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.ApplyNameTableEdit

applyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.AbstractOperator

applyTo(ElementFormats) - Method in interface info.bioinfweb.treegraph.document.format.operate.FormatOperator

aspectRatio - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

assign(BranchFormats) - Method in class info.bioinfweb.treegraph.document.format.BranchFormats

assign(DistanceDimension) - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension

assign(DistanceValue) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue

assign(GlobalFormats) - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats

assign(Margin) - Method in class info.bioinfweb.treegraph.document.format.Margin

assign(NodeFormats) - Method in class info.bioinfweb.treegraph.document.format.NodeFormats

assign(ScaleBarFormats) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

assign(ScaleValue) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue

assign(HiddenDataMap) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

Clears the current contents of the map and fills it with copies of the contents of the given map.

assign(TextElementData) - Method in class info.bioinfweb.treegraph.document.TextElementData

assignBranchFormats(BranchFormats) - Method in class info.bioinfweb.treegraph.document.format.BranchFormats

assignData(Node, TextElementData) - Method in class info.bioinfweb.treegraph.document.nodedata.HiddenDataAdapter

assignData(Node, TextElementData) - Method in class info.bioinfweb.treegraph.document.nodedata.LabelAdapter

assignData(Node, TextElementData) - Method in class info.bioinfweb.treegraph.document.nodedata.NodeNameAdapter

assignData(Node, TextElementData) - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter

assignDocument(Document) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

assignEdgeRadiusFormats(EdgeRadiusFormats) - Method in interface info.bioinfweb.treegraph.document.format.EdgeRadiusFormats

assignEdgeRadiusFormats(EdgeRadiusFormats) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

assignEdgeRadiusFormats(EdgeRadiusFormats) - Method in class info.bioinfweb.treegraph.document.format.NodeFormats

assignIDsToLabelBlock(Labels, boolean, int) - Method in class info.bioinfweb.treegraph.document.undo.edit.AssignLabelIDsEdit

Assigns a new label ID to each label in this label block currently without an ID.

assignIDsToSubtree(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.AssignLabelIDsEdit

AssignImportColumnsDialog - Class in info.bioinfweb.treegraph.gui.dialogs.datatable

AssignImportColumnsDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog

assignImportDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

assignLabelData(Label) - Method in class info.bioinfweb.treegraph.document.Label

Assigns the values of the passed label to this class.

AssignLabelIDsAction - Class in info.bioinfweb.treegraph.gui.actions.edit

AssignLabelIDsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.AssignLabelIDsAction

AssignLabelIDsEdit - Class in info.bioinfweb.treegraph.document.undo.edit

This edit assigns label IDs to all labels in the tree which do not have an ID.

AssignLabelIDsEdit(Document) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.AssignLabelIDsEdit

assignLabelPosition(LabelPositionFormats) - Method in class info.bioinfweb.treegraph.document.format.LabelPositionFormats

assignLegendData(Legend) - Method in class info.bioinfweb.treegraph.document.Legend

This method currently does not do anything but should be called in the clone()-method of derived classes anyway because Legend might contain data that needs to be copied in future versions.

assignLegendFormats(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

assignLegendPosition(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

Adopts the position values and the anchors but not the owning legend object.

assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.BranchFormats

assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats

assignLineFormats(LineFormats) - Method in interface info.bioinfweb.treegraph.document.format.LineFormats

assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.LineFormatsEntity

assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.NodeFormats

assignLineFormats(LineFormats) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

assignPaintSize() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

assignScaleBarData(ScaleBar) - Method in class info.bioinfweb.treegraph.document.ScaleBar

This method currently does not do anything but should be called in the clone()-method of derived classes anyway because ScaleBar might contain data that needs to be copied in future versions.

assignScaleBarFormats(ScaleBarFormats) - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

assignTextElementData(TextElement) - Method in class info.bioinfweb.treegraph.document.TextElement

assignTextFormats(TextFormats) - Method in class info.bioinfweb.treegraph.document.format.TextFormats

assignTree(Node) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

Assigns the node data in the subtree under root to this model.

assignUniqueNames() - Method in class info.bioinfweb.treegraph.document.Tree

Assigns unique names to all nodes in the tree currently without one.

assignUniqueNamesToSubtree(Node) - Method in class info.bioinfweb.treegraph.document.Tree

Assigns unique names to all nodes in the subtree under root currently without one.

assignValue(TextFormats) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

assignValueTo(DistanceValue) - Method in class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput

Assigns the current value of the text-field to the given DistanceValue.

assignValueTo(ScaleValue) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput

assignValueTo(Margin) - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput

Assigns the current values of the text-fields to the given Margin.

ATTR_BG_COLOR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_BOTTOM - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_BRANCH_LENGTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_BRANCH_LENGTH_SCALE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_CONSTANT_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_DECIMAL_FORMAT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_EDGE_RADIUS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_FONT_FAMILY - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_HEIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_HORIZ_LABEL_SPACING - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_ID - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LABEL_ABOVE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LABEL_BLOCK_DISTANCE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LEFT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LEGEND_POS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LEGEND_SPACING - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LEGEND_STYLE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LINE_COLOR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LINE_NO - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LINE_POS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LINE_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LOCALE_COUNTRY - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LOCALE_LANG - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LOCALE_VARIANT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_LONG_INTERVAL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_MIN_BRANCH_LENGTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_MIN_SPACE_ABOVE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_MIN_SPACE_BELOW - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_MIN_TREE_DISTANCE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_RIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SCALE_BAR_ALIGN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SCALE_BAR_DISTANCE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SCALE_BAR_HEIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SCALE_BAR_INCREASE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SCALE_BAR_START - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SCALE_BAR_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SHOW_ROOTED - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SHOW_SCALE_BAR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_SMALL_INTERVAL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_TEXT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_TEXT_COLOR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_TEXT_HEIGHT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_TEXT_IS_DECIMAL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_TEXT_ORIENTATION - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_TEXT_STYLE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_TOP - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_UNIQUE_NAME - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_VERT_LABEL_SPACING - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

ATTR_WIDTH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

attributeMap - Variable in class info.bioinfweb.treegraph.document.Node

AWTExceptionHandler - Class in info.bioinfweb.treegraph

This class is used to handle exceptions during the processing of modal dialogs.

AWTExceptionHandler() - Constructor for class info.bioinfweb.treegraph.AWTExceptionHandler