A B C D E F G H I J K L M N O P Q R S T U V W X Z

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DASH_LENGTH - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

The maximal length of a dash

data - Variable in class info.bioinfweb.treegraph.document.TextElement

DATA_COLUMN_WIDTH - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

dataSplitPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

DataTableDialog - Class in info.bioinfweb.treegraph.gui.dialogs.datatable

DataTableDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

decimal - Variable in class info.bioinfweb.treegraph.document.TextElementData

DECIMAL_COLUMN_WIDTH - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

DECIMAL_FORMAT - Variable in class info.bioinfweb.treegraph.document.nodedata.HiddenDataAdapter

decimalCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

decimalFormat - Variable in class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator

decimalFormat - Variable in class info.bioinfweb.treegraph.document.format.TextFormats

decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

DecimalFormatOperator - Class in info.bioinfweb.treegraph.document.format.operate

This operator is used to change the decimal format of a TextFormats-object.

DecimalFormatOperator(DecimalFormat, Locale) - Constructor for class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator

DecimalFormatPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

DecimalFormatPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

This is the default constructor

DecimalFormatsTableModel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

DecimalFormatsTableModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel

decimalFormatterFactory - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

decimalInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog

decimalInputDialog - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodedata.BranchLengthAdapter

decimalOnly() - Method in interface info.bioinfweb.treegraph.document.nodedata.NodeDataAdapter

decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter

decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodedata.UniqueNameAdapter

DecimalUnitInput - Class in info.bioinfweb.treegraph.gui.dialogs

DecimalUnitInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DecimalUnitInput

decRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

DEFAULT_ADAPTER - Static variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter

DEFAULT_ALIGNMENT - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

DEFAULT_BACKGROUNG_COLOR - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

DEFAULT_BRANCH_LENGTH_ID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

DEFAULT_BRANCH_LENGTH_SCALE - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

DEFAULT_COMPRESSION_METHOD - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFWriter

DEFAULT_DECIMAL_FORMAT_EXPR - Static variable in class info.bioinfweb.treegraph.document.format.TextFormats

DEFAULT_FONT_NAME - Static variable in class info.bioinfweb.treegraph.document.format.TextFormats

DEFAULT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

DEFAULT_INCREASING - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

DEFAULT_LABEL_BLOCK_DISTANCE_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

DEFAULT_LEGEND_SPACING_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

DEFAULT_LINE_COLOR - Static variable in interface info.bioinfweb.treegraph.document.format.LineFormats

DEFAULT_LINE_WIDTH_IN_MM - Static variable in interface info.bioinfweb.treegraph.document.format.LineFormats

DEFAULT_LONG_INTERVAL - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

DEFAULT_LONGEST_PATH_LENGTH - Static variable in class info.bioinfweb.treegraph.document.Tree

The default length of the longest path from the root to a leaf in millimeters.

DEFAULT_LOWER_BORDER - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.IntervalDialog

DEFAULT_MAX_COLOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorPreviewPanel

DEFAULT_MAX_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog

DEFAULT_MIN_COLOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorPreviewPanel

DEFAULT_MIN_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog

DEFAULT_NODE_NAME_ID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

DEFAULT_QUALITY - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGWriter

DEFAULT_SELECTION_COLOR - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

DEFAULT_SEPARATOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog

DEFAULT_SHOW_ROOTED - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

DEFAULT_SHOW_SCALE_BAR - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

DEFAULT_SMALL_INTERVAL - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

DEFAULT_START_LEFT - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

DEFAULT_TEXT_COLOR - Static variable in class info.bioinfweb.treegraph.document.format.TextFormats

DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.TextFormats

DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.TextLabelFormats

DEFAULT_TREE_DISTANCE_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

DEFAULT_TREE_VIEW_WIDTH - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

DEFAULT_UPPER_BORDER - Static variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.IntervalDialog

DEFAULT_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

defaultDecimalFormat - Variable in class info.bioinfweb.treegraph.document.nodedata.LabelAdapter

DefaultTreeSelector - Class in info.bioinfweb.treegraph.document.io

This TreeSelector always selects the first tree.

DefaultTreeSelector() - Constructor for class info.bioinfweb.treegraph.document.io.DefaultTreeSelector

delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.BranchLengthAdapter

delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.HiddenDataAdapter

delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.LabelAdapter

delete(Node) - Method in interface info.bioinfweb.treegraph.document.nodedata.NodeDataAdapter

delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.TextElementDataAdapter

delete(Node) - Method in class info.bioinfweb.treegraph.document.nodedata.UniqueNameAdapter

deleteButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog

deleteColumn(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

DeleteEdit - Class in info.bioinfweb.treegraph.document.undo.edit

Removes all elements currently selected.

DeleteEdit(Document, ConcretePaintableElement[], boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

DeleteElementAction - Class in info.bioinfweb.treegraph.gui.actions.edit

DeleteElementAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction

deleteLength() - Method in class info.bioinfweb.treegraph.document.Branch

deleteOutsideInterval(int, double, double) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

deleteOutsideIntervalSubtree(Node, NodeDataAdapter, double, double) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

DeleteSubelementsAction - Class in info.bioinfweb.treegraph.gui.actions.edit

DeleteSubelementsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction

DeleteSubelementsEdit - Class in info.bioinfweb.treegraph.document.undo.edit

DeleteSubelementsEdit(Document, Node, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit

deleteSubtree(Node, NodeDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

deleteSubtreeElements() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

delimited - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken

desktopPane - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

destInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog

destLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog

dialog - Variable in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction

dialog - Variable in class info.bioinfweb.treegraph.gui.actions.EditDialogAction

dialog - Variable in class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction

dialog - Variable in class info.bioinfweb.treegraph.gui.actions.help.AboutAction

DIALOG_HELP_TOPIC - Static variable in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit

die() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit

difAbove - Variable in class info.bioinfweb.treegraph.document.NodePositionData

difBelow - Variable in class info.bioinfweb.treegraph.document.NodePositionData

dimensionsInPixels() - Method in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

dimensionsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

dimensionsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog

directionPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

distance - Variable in class info.bioinfweb.treegraph.document.format.operate.MinTreeDistanceOperator

DistanceAdapter - Interface in info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.distanceadapters

DistanceAdapterListModel - Class in info.bioinfweb.treegraph.gui.dialogs.formatbynodedata

DistanceAdapterListModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceAdapterListModel

DistanceDimension - Class in info.bioinfweb.treegraph.document.format

DistanceDimension() - Constructor for class info.bioinfweb.treegraph.document.format.DistanceDimension

DistanceDimension(DistanceValue, DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.DistanceDimension

distancesPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog

DistanceValue - Class in info.bioinfweb.treegraph.document.format

This class represents a distance in the document.

DistanceValue() - Constructor for class info.bioinfweb.treegraph.document.format.DistanceValue

DistanceValue(float) - Constructor for class info.bioinfweb.treegraph.document.format.DistanceValue

distanceValue - Variable in class info.bioinfweb.treegraph.document.format.ScaleValue

DistanceValueInput - Class in info.bioinfweb.treegraph.gui.dialogs

DistanceValueInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput

DistanceValuePopup - Class in info.bioinfweb.treegraph.gui.mainframe.tools

DistanceValuePopup(Frame) - Constructor for class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup

DistanceValuesByNodeBranchDataAction - Class in info.bioinfweb.treegraph.gui.actions.format

DistanceValuesByNodeBranchDataAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.DistanceValuesByNodeBranchDataAction

DistanceValuesByNodeBranchDataDialog - Class in info.bioinfweb.treegraph.gui.dialogs.formatbynodedata

DistanceValuesByNodeBranchDataDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog

DistanceValuesByNodeBranchDataEdit - Class in info.bioinfweb.treegraph.document.undo.format

DistanceValuesByNodeBranchDataEdit(Document, NodeDataAdapter, float, float, boolean, boolean, DistanceAdapter[]) - Constructor for class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.AbstractOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.ConstantWidthOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.EdgeRadiusOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.FontNameOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelAboveOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelLineNumberOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelLinePositionOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LegendPositionOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LegendStyleOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LineColorOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LineWidthOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinLengthOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinSpaceAboveOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinSpaceBelowOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinTreeDistanceOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.ScaleBarFormatsOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextColorOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextHeightOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextOrientationOperator

doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextStyleOperator

Document - Class in info.bioinfweb.treegraph.document

Instances of this class contain the data for a tree and its formats as well as position-information for all TreePositioners used with this Document.

Document() - Constructor for class info.bioinfweb.treegraph.document.Document

Creates a new Instance of Document with a default name.

Document(String) - Constructor for class info.bioinfweb.treegraph.document.Document

Creates a new Instance of Document.

Document(boolean) - Constructor for class info.bioinfweb.treegraph.document.Document

document - Variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader

document - Variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter

document - Variable in class info.bioinfweb.treegraph.document.undo.DocumentEdit

document - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

document - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner

document - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

document - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.RenameIDDialog

document - Variable in class info.bioinfweb.treegraph.gui.dialogs.EditDialog

document - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

document - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel

DocumentAction - Class in info.bioinfweb.treegraph.gui.actions

Implements basic functionality for all actions in TreeGraph 2 which are applied on opened documents.

DocumentAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.DocumentAction

DocumentEdit - Class in info.bioinfweb.treegraph.document.undo

DocumentEdit(Document) - Constructor for class info.bioinfweb.treegraph.document.undo.DocumentEdit

DocumentFilter - Interface in info.bioinfweb.treegraph.document.io

documentMargin - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

documentMarginInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

documentPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

DocumentReader - Interface in info.bioinfweb.treegraph.document.io

DocumentView - Interface in info.bioinfweb.treegraph.document

DocumentWriter - Interface in info.bioinfweb.treegraph.document.io

doDefaultCloseAction() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

doubleClick(MouseEvent, ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener

down - Variable in class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit

down - Variable in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit

down - Variable in class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction

downButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog

downRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

dX - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

dY - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter