Uses of Class
info.bioinfweb.treegraph.document.Tree

Packages that use Tree

info.bioinfweb.treegraph.document	Contains the classes that represent the data structure of TreeGraph 2 (document elements and formats) as well as all edit operations in the undo-package to manipulate the data structure and classes to read and write a document from and to different formats (io- subpackage).
info.bioinfweb.treegraph.document.io.newick
info.bioinfweb.treegraph.document.undo.format
info.bioinfweb.treegraph.gui.actions.edit
info.bioinfweb.treegraph.gui.dialogs.datatable
info.bioinfweb.treegraph.gui.dialogs.nodedatainput

Uses of Tree in info.bioinfweb.treegraph.document

Fields in info.bioinfweb.treegraph.document declared as Tree

private Tree	Legends.tree
private Tree	Document.tree

Methods in info.bioinfweb.treegraph.document that return Tree

Tree	Legends.getTree()
Tree	Document.getTree()

Methods in info.bioinfweb.treegraph.document with parameters of type Tree

void	Document.setTree(Tree tree)

Constructors in info.bioinfweb.treegraph.document with parameters of type Tree

Legends(Tree tree)

Uses of Tree in info.bioinfweb.treegraph.document.io.newick

Methods in info.bioinfweb.treegraph.document.io.newick that return Tree

static Tree	NewickStringReader.read(String newick)
static Tree	NewickStringReader.read(String newick, NodeDataAdapter internalAdapter, NodeDataAdapter branchLengthsAdapter)
static Tree	NewickStringReader.read(String newick, NodeDataAdapter internalAdapter, NodeDataAdapter branchLengthsAdapter, TranslTable translTable, boolean translateInternals)
private static Tree	NewickStringReader.readTree(Vector<NewickToken> tokens, NodeDataAdapter internalAdapter, NodeDataAdapter branchLengthsAdapter, TranslTable translTable, boolean translateInternals)

Methods in info.bioinfweb.treegraph.document.io.newick with parameters of type Tree

static String

NewickStringWriter.write(Tree tree, NodeDataAdapter internalAdapter, NodeDataAdapter leafAdapter, NodeDataAdapter branchLengthAdapter)

Uses of Tree in info.bioinfweb.treegraph.document.undo.format

Methods in info.bioinfweb.treegraph.document.undo.format with parameters of type Tree

static float

ScaleBranchLengthsEdit.calculateScale(Tree tree, float length) Returns the branch length scale necessary for the specified tree so that the longest path to a leaf of this tree has the specified length.

Uses of Tree in info.bioinfweb.treegraph.gui.actions.edit

Methods in info.bioinfweb.treegraph.gui.actions.edit with parameters of type Tree

private void

SearchTextAction.searchScaleBar(Tree tree)

Uses of Tree in info.bioinfweb.treegraph.gui.dialogs.datatable

Methods in info.bioinfweb.treegraph.gui.dialogs.datatable with parameters of type Tree

private void	AssignImportColumnsDialog.createInputs(int count, Tree tree)
NodeDataAdapter[]	AssignImportColumnsDialog.execute(int count, Tree tree)

Uses of Tree in info.bioinfweb.treegraph.gui.dialogs.nodedatainput

Methods in info.bioinfweb.treegraph.gui.dialogs.nodedatainput with parameters of type Tree

void	NodeDataInput.setAdapters(Tree tree) Refeshs the selectable node data adapters.
void	NodeDataComboBoxModel.setAdapters(Tree tree) Equvilent to a call of setAdapters(tree, true, false, false).
void	NodeDataInput.setAdapters(Tree tree, boolean nodeNamesSelectable, boolean branchLengthSelectable, boolean decimalOnly, boolean newIDSelectable) Refeshs the selectable node data adapters.
void	NodeDataComboBoxModel.setAdapters(Tree tree, boolean nodeNamesSelectable, boolean branchLengthSelectable, boolean decimalOnly, boolean newIDSelectable)