info.bioinfweb.treegraph.document.io
Interface DocumentReader

All Known Implementing Classes:

AbstractDocumentReader, NewickReader, NexusReader, TextStreamReader, TGFReader, XTGReader

public interface DocumentReader

Method Summary

Document	read(File file)
Document	read(File file, NodeDataAdapter internalAdapter, NodeDataAdapter branchLengthsAdapter)
Document	read(File file, NodeDataAdapter internalAdapter, NodeDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)
Document	read(InputStream stream)
Document	read(InputStream stream, NodeDataAdapter internalAdapter, NodeDataAdapter branchLengthsAdapter)
Document	read(InputStream stream, NodeDataAdapter internalAdapter, NodeDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)

Method Detail

read

Document read(InputStream stream)
              throws Exception

Throws:

Exception

read

Document read(File file)
              throws Exception

Throws:

Exception

read

Document read(InputStream stream,
              NodeDataAdapter internalAdapter,
              NodeDataAdapter branchLengthsAdapter)
              throws Exception

Throws:

Exception

read

Document read(File file,
              NodeDataAdapter internalAdapter,
              NodeDataAdapter branchLengthsAdapter)
              throws Exception

Throws:

Exception

read

Document read(InputStream stream,
              NodeDataAdapter internalAdapter,
              NodeDataAdapter branchLengthsAdapter,
              TreeSelector selector,
              boolean translateInternalNodes)
              throws Exception

Throws:

Exception

read

Document read(File file,
              NodeDataAdapter internalAdapter,
              NodeDataAdapter branchLengthsAdapter,
              TreeSelector selector,
              boolean translateInternalNodes)
              throws Exception

Throws:

Exception