info.bioinfweb.treegraph.document.io.newick
Class NewickStringWriter

java.lang.Object
  info.bioinfweb.treegraph.document.io.newick.NewickStringChars
      info.bioinfweb.treegraph.document.io.newick.NewickStringWriter

public class NewickStringWriter
extends NewickStringChars

Field Summary

Fields inherited from class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

COMMENT_END, COMMENT_START, ELEMENT_SEPERATOR, FREE_NAME_BLANK, LENGTH_SEPERATOR, NAME_DELIMITER, SUBTREE_END, SUBTREE_START, TERMINAL_SYMBOL

Constructor Summary

NewickStringWriter()

Method Summary

private static String	formatName(Node node, NodeDataAdapter adapter)
private static boolean	isFreeName(String name)
static String	write(Tree tree, NodeDataAdapter internalAdapter, NodeDataAdapter leafAdapter, NodeDataAdapter branchLengthAdapter)
private static String	writeSubtree(Node root, NodeDataAdapter internalAdapter, NodeDataAdapter leafAdapter, NodeDataAdapter branchLengthAdapter)

Methods inherited from class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

isCharAfterLength, isFreeNameChar, isFreeNameFirstChar

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NewickStringWriter

public NewickStringWriter()

Method Detail

isFreeName

private static boolean isFreeName(String name)

formatName

private static String formatName(Node node,
                                 NodeDataAdapter adapter)

writeSubtree

private static String writeSubtree(Node root,
                                   NodeDataAdapter internalAdapter,
                                   NodeDataAdapter leafAdapter,
                                   NodeDataAdapter branchLengthAdapter)

write

public static String write(Tree tree,
                           NodeDataAdapter internalAdapter,
                           NodeDataAdapter leafAdapter,
                           NodeDataAdapter branchLengthAdapter)