info.bioinfweb.treegraph.gui.dialogs.datatable
Class NodeDataTableModel

java.lang.Object
  javax.swing.table.AbstractTableModel
      info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel

All Implemented Interfaces:

Serializable, TableModel

public class NodeDataTableModel
extends AbstractTableModel

This table model allows to display all branch and node data in a table. The unique node names, the node names and the branch lengths are always listed. Furthermore the table can contain labels and hidden data with a specified ID where ervery ID gets its own column.

Additionally every second column contains information about the data type (decimal or string) of the listes data which can also be edited if the data structure allows it. (Therefore the data type of unique names and branch lengths cannot be changed.)

Author:

Ben Stöver

See Also:

Serialized Form

Field Summary

private Vector<NodeDataAdapter>	adapters
static int	COL_BRANCH_LENGTH_DATA_TYPE
static int	COL_UNIQUE_NAME_DATA_TYPE
private Document	document
private Vector<Node>	nodes

Fields inherited from class javax.swing.table.AbstractTableModel

listenerList

Constructor Summary

NodeDataTableModel()

Method Summary

void	assignTree(Node root) Assigns the node data in the subtree under root to this model.
void	copyColumn(boolean includeLeafs, NodeDataAdapter src, NodeDataAdapter dest)
private void	copySubtree(Node root, boolean includeLeafs, NodeDataAdapter src, NodeDataAdapter dest)
void	deleteColumn(int col)
void	deleteOutsideInterval(int col, double upperBorder, double lowerBorder)
private void	deleteOutsideIntervalSubtree(Node root, NodeDataAdapter adapter, double upperBorder, double lowerBorder)
private void	deleteSubtree(Node root, NodeDataAdapter adapter)
private void	fillAdapterList(Node root)
private void	fillNodeList(Node root)
NodeDataAdapter	getAdapter(int col)
Class<?>	getColumnClass(int col)
int	getColumnCount()
String	getColumnName(int col)
Document	getDocument()
int	getRowCount()
ConcretePaintableElement	getTreeElement(int row, int col)
Object	getValueAt(int row, int col)
boolean	importData(NodeDataAdapter[] adapters, String[][] data)
boolean	isCellEditable(int row, int col)
void	registerChange()
void	rescaleColumn(int col, NodeDataCalculator calculator)
private void	rescaleSubtree(Node root, NodeDataAdapter adapter, NodeDataCalculator calculator)
void	setDataType(int col, boolean decimal)
private void	setDataTypeInSubtree(Node root, TextElementDataAdapter adapter, boolean decimal)
void	setValueAt(Object value, int row, int col)

Methods inherited from class javax.swing.table.AbstractTableModel

addTableModelListener, findColumn, fireTableCellUpdated, fireTableChanged, fireTableDataChanged, fireTableRowsDeleted, fireTableRowsInserted, fireTableRowsUpdated, fireTableStructureChanged, getListeners, getTableModelListeners, removeTableModelListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

COL_UNIQUE_NAME_DATA_TYPE

public static final int COL_UNIQUE_NAME_DATA_TYPE

See Also:

Constant Field Values

COL_BRANCH_LENGTH_DATA_TYPE

public static final int COL_BRANCH_LENGTH_DATA_TYPE

See Also:

Constant Field Values

adapters

private Vector<NodeDataAdapter> adapters

nodes

private Vector<Node> nodes

document

private Document document

Constructor Detail

NodeDataTableModel

public NodeDataTableModel()

Method Detail

getDocument

public Document getDocument()

fillAdapterList

private void fillAdapterList(Node root)

fillNodeList

private void fillNodeList(Node root)

assignTree

public void assignTree(Node root)

Assigns the node data in the subtree under root to this model. Previous values are deleted.

Parameters:

root - - the root od the tree to fetch the data from

registerChange

public void registerChange()

copySubtree

private void copySubtree(Node root,
                         boolean includeLeafs,
                         NodeDataAdapter src,
                         NodeDataAdapter dest)

copyColumn

public void copyColumn(boolean includeLeafs,
                       NodeDataAdapter src,
                       NodeDataAdapter dest)

deleteSubtree

private void deleteSubtree(Node root,
                           NodeDataAdapter adapter)

deleteColumn

public void deleteColumn(int col)

rescaleSubtree

private void rescaleSubtree(Node root,
                            NodeDataAdapter adapter,
                            NodeDataCalculator calculator)

rescaleColumn

public void rescaleColumn(int col,
                          NodeDataCalculator calculator)

deleteOutsideIntervalSubtree

private void deleteOutsideIntervalSubtree(Node root,
                                          NodeDataAdapter adapter,
                                          double upperBorder,
                                          double lowerBorder)

deleteOutsideInterval

public void deleteOutsideInterval(int col,
                                  double upperBorder,
                                  double lowerBorder)

importData

public boolean importData(NodeDataAdapter[] adapters,
                          String[][] data)

Parameters:

adapters -

data -

Returns:

true, if all data has been imported, false, if one or more unique node name was not found in the current tree

setDataTypeInSubtree

private void setDataTypeInSubtree(Node root,
                                  TextElementDataAdapter adapter,
                                  boolean decimal)

setDataType

public void setDataType(int col,
                        boolean decimal)

getTreeElement

public ConcretePaintableElement getTreeElement(int row,
                                               int col)

getColumnClass

public Class<?> getColumnClass(int col)

Specified by:

getColumnClass in interface TableModel

Overrides:

getColumnClass in class AbstractTableModel

getColumnName

public String getColumnName(int col)

Specified by:

getColumnName in interface TableModel

Overrides:

getColumnName in class AbstractTableModel

isCellEditable

public boolean isCellEditable(int row,
                              int col)

Specified by:

isCellEditable in interface TableModel

Overrides:

isCellEditable in class AbstractTableModel

getColumnCount

public int getColumnCount()

getRowCount

public int getRowCount()

getValueAt

public Object getValueAt(int row,
                         int col)

setValueAt

public void setValueAt(Object value,
                       int row,
                       int col)

Specified by:

setValueAt in interface TableModel

Overrides:

setValueAt in class AbstractTableModel

getAdapter

public NodeDataAdapter getAdapter(int col)