Serialized Form

Package info.bioinfweb.treegraph.document.clipboard

Class info.bioinfweb.treegraph.document.clipboard.TreeClipboardException extends RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.format.operate

Class info.bioinfweb.treegraph.document.format.operate.InvalidTargetException extends RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.io

Class info.bioinfweb.treegraph.document.io.ReadWriteFactoryException extends RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.io.newick

Class info.bioinfweb.treegraph.document.io.newick.NewickException extends RuntimeException implements Serializable

serialVersionUID: 1L

Serialized Fields

position

int position

Package info.bioinfweb.treegraph.document.io.nexus

Class info.bioinfweb.treegraph.document.io.nexus.NexusException extends RuntimeException implements Serializable

Serialized Fields

error

NexusError error

Package info.bioinfweb.treegraph.document.nodedata

Class info.bioinfweb.treegraph.document.nodedata.NodeDataActionNotSupportedException extends RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.undo.edit

Class info.bioinfweb.treegraph.document.undo.edit.InvalidFormatException extends Exception implements Serializable

Package info.bioinfweb.treegraph.gui.actions

Class info.bioinfweb.treegraph.gui.actions.DocumentAction extends TreeGraphAction implements Serializable

Serialized Fields

mainFrame

MainFrame mainFrame

Class info.bioinfweb.treegraph.gui.actions.EditDialogAction extends DocumentAction implements Serializable

Serialized Fields

dialog

EditDialog dialog

Class info.bioinfweb.treegraph.gui.actions.TreeGraphAction extends AbstractAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.edit

Class info.bioinfweb.treegraph.gui.actions.edit.ApplyNameTableAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.AssignLabelIDsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.ChangeLabelIDAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CollapseNodeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CopyAllLabelsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CopyElementAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CutAction extends CopyElementAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditBranchLengthAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditBranchNodeDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditTextElementAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction extends DocumentAction implements Serializable

Serialized Fields

down

boolean down

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeDownAction extends LadderizeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeUpAction extends LadderizeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeDownAction extends MoveSubtreeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeUpAction extends MoveSubtreeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewLegendAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewNodeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewTextLabelAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.PasteAction extends DocumentAction implements Serializable

Serialized Fields

contrastManager

ContrastManager contrastManager

Class info.bioinfweb.treegraph.gui.actions.edit.RedoAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.RedoToAction extends UndoRedoToAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.RerootAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction extends DocumentAction implements Serializable

Serialized Fields

dialog

SearchTextDialog dialog

selection

TreeSelection selection

pattern

Pattern pattern

Class info.bioinfweb.treegraph.gui.actions.edit.SeparateBranchAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.UndoAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.UndoRedoToAction extends DocumentAction implements Serializable

Serialized Fields

edit

UndoableEdit edit

Class info.bioinfweb.treegraph.gui.actions.edit.UndoToAction extends UndoRedoToAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.file

Class info.bioinfweb.treegraph.gui.actions.file.AddSupportValuesAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.CloseAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ExitAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction extends EditDialogAction implements Serializable

Serialized Fields

dialog

ExportToGraphicDialog dialog

Class info.bioinfweb.treegraph.gui.actions.file.ExportToNewickNexusAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.NewDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.OpenAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.SaveAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.SaveAsAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.format

Class info.bioinfweb.treegraph.gui.actions.format.ColorsByNodeBranchDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.DistanceValuesByNodeBranchDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.EditElementFormatsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.EditGlobalFormatsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ReanchorLegendAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ScaleBranchLengthsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ShowHideScaleBarAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ShowRootedAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.help

Class info.bioinfweb.treegraph.gui.actions.help.AboutAction extends TreeGraphAction implements Serializable

Serialized Fields

dialog

AboutDialog dialog

Class info.bioinfweb.treegraph.gui.actions.help.HelpAboutMenuAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpContentsAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpMainPageAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpTopicAction extends TreeGraphAction implements Serializable

Serialized Fields

topic

int topic

Class info.bioinfweb.treegraph.gui.actions.help.HomepageAction extends TreeGraphAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.select

Class info.bioinfweb.treegraph.gui.actions.select.SelectAllAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsInSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsWithIDAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsWithPosIndexAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInSubtreeAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.view

Class info.bioinfweb.treegraph.gui.actions.view.ChangePainterIDAction extends DocumentAction implements Serializable

Serialized Fields

type

PositionPaintType type

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToHeightAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthHeightAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetUserZoomAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetZoomAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetZoomToOriginalAction extends SetZoomAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.window

Class info.bioinfweb.treegraph.gui.actions.window.CascadeAction extends TreeGraphAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.NextDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.PreviousDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.SelectFrameAction extends TreeGraphAction implements Serializable

Serialized Fields

frame

JInternalFrame frame

Class info.bioinfweb.treegraph.gui.actions.window.TileHorizontalAction extends TreeGraphAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.TileVerticalAction extends TreeGraphAction implements Serializable

Package info.bioinfweb.treegraph.gui.dialogs

Class info.bioinfweb.treegraph.gui.dialogs.AboutDialog extends JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

contentsTabbedPane

JTabbedPane contentsTabbedPane

generalPanel

JPanel generalPanel

gplPanel

JPanel gplPanel

apachePanel

JPanel apachePanel

batikLabel

JLabel batikLabel

buttonPanel

JPanel buttonPanel

closeButton

JButton closeButton

apacheTextArea

JEditorPane apacheTextArea

apacheScrollPane

JScrollPane apacheScrollPane

gplScrollPane

JScrollPane gplScrollPane

gplEditorPane

JEditorPane gplEditorPane

infoLabel

JLabel infoLabel

licenceLabel

JLabel licenceLabel

copyrightLabel

JLabel copyrightLabel

Class info.bioinfweb.treegraph.gui.dialogs.ApplyNameTableDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

fileChooser

JFileChooser fileChooser

separatorPanel

JPanel separatorPanel

nodeDataPanel

JPanel nodeDataPanel

tabRadioButton

JRadioButton tabRadioButton

stringRadioButton

JRadioButton stringRadioButton

separatorTextField

JTextField separatorTextField

separatorGroup

ButtonGroup separatorGroup

adapterComboBox

JComboBox adapterComboBox

fileChooserPanel

JPanel fileChooserPanel

whitespaceCheckBox

JCheckBox whitespaceCheckBox

parseNumericValuesCheckBox

JCheckBox parseNumericValuesCheckBox

caseSensitiveCheckBox

JCheckBox caseSensitiveCheckBox

nodeDataLabel

JLabel nodeDataLabel

Class info.bioinfweb.treegraph.gui.dialogs.EditDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

Serialized Fields

document

Document document

selection

TreeSelection selection

Class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

formatsTabbedPane

JTabbedPane formatsTabbedPane

documentPanel

JPanel documentPanel

branchLabelPanel

JPanel branchLabelPanel

nodePanel

JPanel nodePanel

legendPanel

JPanel legendPanel

documentMarginInput

MarginInput documentMarginInput

labelBlockMarginInput

MarginInput labelBlockMarginInput

branchLengthScaleInput

DistanceValueInput branchLengthScaleInput

horizontalLabelSpacingInput

DistanceValueInput horizontalLabelSpacingInput

verticalLabelSpacingInput

DistanceValueInput verticalLabelSpacingInput

labelBlockDistanceInput

DistanceValueInput labelBlockDistanceInput

nodeMarginInput

MarginInput nodeMarginInput

leafMarginInput

MarginInput leafMarginInput

legendMarginInput

MarginInput legendMarginInput

legendSpacingInput

DistanceValueInput legendSpacingInput

colorChooser

JColorChooser colorChooser

showRootedCheckBox

JCheckBox showRootedCheckBox

showScaleBarCheckBox

JCheckBox showScaleBarCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.LabelIDComboBox extends JComboBox implements Serializable

Class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

replacePanel

JPanel replacePanel

nodeDataLabel

JLabel nodeDataLabel

adapterComboBox

JComboBox adapterComboBox

replaceLabel

JLabel replaceLabel

replaceTextField

JTextField replaceTextField

positionPanel

JPanel positionPanel

beginningRadioButton

JRadioButton beginningRadioButton

endRadioButton

JRadioButton endRadioButton

replaceRadioButton

JRadioButton replaceRadioButton

replaceTextLabel

JLabel replaceTextLabel

findTextField

JTextField findTextField

insertGroup

ButtonGroup insertGroup

caseSensitiveCheckBox

JCheckBox caseSensitiveCheckBox

wordsOnlyCheckBox

JCheckBox wordsOnlyCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

lengthPanel

JPanel lengthPanel

lengthInput

DistanceValueInput lengthInput

Class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

searchPanel

JPanel searchPanel

searchTextField

JTextField searchTextField

caseSensitiveCheckBox

JCheckBox caseSensitiveCheckBox

includeHiddenCheckBox

JCheckBox includeHiddenCheckBox

wordsOnlyCheckBox

JCheckBox wordsOnlyCheckBox

Package info.bioinfweb.treegraph.gui.dialogs.datatable

Class info.bioinfweb.treegraph.gui.dialogs.datatable.AssignImportColumnsDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

importPanel

JPanel importPanel

typeLabel

JLabel typeLabel

idLabel

JLabel idLabel

inputs

Vector<E> inputs

firstLineLabel

JLabel firstLineLabel

uniqueNamesLabel

JLabel uniqueNamesLabel

Class info.bioinfweb.treegraph.gui.dialogs.datatable.CopyNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

copyPanel

JPanel copyPanel

srcLabel

JLabel srcLabel

srcInput

NodeDataInput srcInput

destLabel

JLabel destLabel

labelIDLabel

JLabel labelIDLabel

destInput

NewNodeDataInput destInput

includeLeafsCheckBox

JCheckBox includeLeafsCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.datatable.DataTableDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

self

DataTableDialog self

exportDialog

ExportNodeDataDialog exportDialog

fileChooser

JFileChooser fileChooser

assignImportDialog

AssignImportColumnsDialog assignImportDialog

copyDialog

CopyNodeDataDialog copyDialog

decimalInputDialog

info.webinsel.util.swing.DecimalInputDialog decimalInputDialog

nameTableDialog

ApplyNameTableDialog nameTableDialog

replaceDialog

ReplaceInNodeDataDialog replaceDialog

renameIDDialog

RenameIDDialog renameIDDialog

intervalDialog

IntervalDialog intervalDialog

jContentPane

JPanel jContentPane

editButtonsPanel

JPanel editButtonsPanel

deleteButton

JButton deleteButton

copyButton

JButton copyButton

importButton

JButton importButton

exportButton

JButton exportButton

addToValuesButton

JButton addToValuesButton

multiplyValuesButton

JButton multiplyValuesButton

dataSplitPane

JSplitPane dataSplitPane

treeViewPanel

TreeViewPanel treeViewPanel

tableScrollPane

JScrollPane tableScrollPane

table

JTable table

treeScrollPane

JScrollPane treeScrollPane

applyNameTableButton

JButton applyNameTableButton

renameIDButton

JButton renameIDButton

logValuesButton

JButton logValuesButton

expValuesButton

JButton expValuesButton

raiseToButton

JButton raiseToButton

replaceButton

JButton replaceButton

setDecimalToAllButton

JButton setDecimalToAllButton

setTextToAllButton

JButton setTextToAllButton

IntervalButton

JButton IntervalButton

Class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

nodeDataPanel

JPanel nodeDataPanel

nodeDataInput

NodeDataInput nodeDataInput

tableScrollPane

JScrollPane tableScrollPane

table

JTable table

nodeDataButtonsPanel

JPanel nodeDataButtonsPanel

addButton

JButton addButton

replaceButton

JButton replaceButton

removeButton

JButton removeButton

clearButton

JButton clearButton

upButton

JButton upButton

downButton

JButton downButton

filePanel

JPanel filePanel

fileTextField

JTextField fileTextField

fileButton

JButton fileButton

fileChooser

JFileChooser fileChooser

Class info.bioinfweb.treegraph.gui.dialogs.datatable.ExportNodeDataTableModel extends AbstractTableModel implements Serializable

Serialized Fields

adapters

Vector<E> adapters

Class info.bioinfweb.treegraph.gui.dialogs.datatable.IntervalDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

intervalPanel

JPanel intervalPanel

upperInput

info.webinsel.util.swing.DecimalInput upperInput

lowerInput

info.webinsel.util.swing.DecimalInput lowerInput

Class info.bioinfweb.treegraph.gui.dialogs.datatable.NodeDataTableModel extends AbstractTableModel implements Serializable

Serialized Fields

adapters

Vector<E> adapters

nodes

Vector<E> nodes

document

Document document

Class info.bioinfweb.treegraph.gui.dialogs.datatable.RenameIDDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

document

Document document

oldNames

String[] oldNames

jContentPane

JPanel jContentPane

labelIDPanel

JPanel labelIDPanel

newNameTextField

JTextField newNameTextField

renameButton

JButton renameButton

idList

JList idList

Package info.bioinfweb.treegraph.gui.dialogs.editelement

Class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog extends EditDialog implements Serializable

Serialized Fields

textElement

TextElement textElement

valuesPanel

JPanel valuesPanel

textLabel

JLabel textLabel

valueTextField

JFormattedTextField valueTextField

stringFormatterFactory

JFormattedTextField.AbstractFormatterFactory stringFormatterFactory

decimalFormatterFactory

JFormattedTextField.AbstractFormatterFactory decimalFormatterFactory

decimalCheckBox

JCheckBox decimalCheckBox

previewPanel

JPanel previewPanel

previewLabel

JLabel previewLabel

Class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

idPanel

JPanel idPanel

idComboBox

JComboBox idComboBox

Class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

inputPanel

JPanel inputPanel

decimalInput

info.webinsel.util.swing.DecimalInput decimalInput

hasLengthCheckBox

JCheckBox hasLengthCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog extends AbstractTextElementDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

Class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog extends AbstractTextElementDialog implements Serializable

Serialized Fields

jContentPane

JPanel jContentPane

idPanel

JPanel idPanel

idComboBox

JComboBox idComboBox

Package info.bioinfweb.treegraph.gui.dialogs.elementformats

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

minLengthInput

DistanceValueInput minLengthInput

spaceAboveInput

DistanceValueInput spaceAboveInput

spaceBelowInput

DistanceValueInput spaceBelowInput

spacer

JLabel spacer

constantWidthCheckBox

JCheckBox constantWidthCheckBox

constantWidthMonitor

info.webinsel.util.ChangeMonitor constantWidthMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

formatPanel

JPanel formatPanel

examplePanel

JPanel examplePanel

formatLabel

JLabel formatLabel

formatTextField

JTextField formatTextField

predifinedTable

JTable predifinedTable

localeComboBox

JComboBox localeComboBox

localeLabel

JLabel localeLabel

changeMonitor

info.webinsel.util.swing.SwingChangeMonitor changeMonitor

tableScrollPane

JScrollPane tableScrollPane

positiveExampleLabel

JLabel positiveExampleLabel

negativeExampleLabel

JLabel negativeExampleLabel

hintLabel

JLabel hintLabel

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel extends AbstractTableModel implements Serializable

Serialized Fields

entries

Vector<E> entries

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

formatsTabbedPane

JTabbedPane formatsTabbedPane

tabs

Vector<E> tabs

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel extends JColorChooser implements Serializable

serialVersionUID: 1L

Serialized Fields

colorMonitor

info.webinsel.util.swing.SwingChangeMonitor colorMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

fontFamilyPanel

JPanel fontFamilyPanel

fontStylePanel

JPanel fontStylePanel

fontHeightPanel

JPanel fontHeightPanel

previewPanel

JPanel previewPanel

boldCheckBox

JCheckBox boldCheckBox

italicCheckBox

JCheckBox italicCheckBox

underlineCheckBox

JCheckBox underlineCheckBox

fontHeightInput

DistanceValueInput fontHeightInput

previewTextField

JTextField previewTextField

fontFamilyList

JList fontFamilyList

fontFamilyTextField

JTextField fontFamilyTextField

fontFamilyMonitor

info.webinsel.util.swing.SwingChangeMonitor fontFamilyMonitor

boldMonitor

info.webinsel.util.ChangeMonitor boldMonitor

italicMonitor

info.webinsel.util.ChangeMonitor italicMonitor

underlineMonitor

info.webinsel.util.ChangeMonitor underlineMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

decimalFormat

DecimalFormat decimalFormat

aboveRadioButton

JRadioButton aboveRadioButton

belowRadioButton

JRadioButton belowRadioButton

lineNoLabel

JLabel lineNoLabel

lineNoTextField

JFormattedTextField lineNoTextField

linePosLabel

JLabel linePosLabel

linePosTextField

JFormattedTextField linePosTextField

aboveBelowGroup

ButtonGroup aboveBelowGroup

aboveMonitor

info.webinsel.util.swing.SwingChangeMonitor aboveMonitor

lineNoMonitor

info.webinsel.util.swing.SwingChangeMonitor lineNoMonitor

linePosMonitor

info.webinsel.util.swing.SwingChangeMonitor linePosMonitor

aboveBelowPanel

JPanel aboveBelowPanel

labelNumbersPanel

JPanel labelNumbersPanel

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

decimalFormat

DecimalFormat decimalFormat

legendStylePanel

JPanel legendStylePanel

bracketRadioButton

JRadioButton bracketRadioButton

braceRadioButton

JRadioButton braceRadioButton

legendOrientationPanel

JPanel legendOrientationPanel

horizontalRadioButton

JRadioButton horizontalRadioButton

upRadioButton

JRadioButton upRadioButton

downRadioButton

JRadioButton downRadioButton

styleGroup

ButtonGroup styleGroup

orientationGroup

ButtonGroup orientationGroup

styleMonitor

info.webinsel.util.swing.SwingChangeMonitor styleMonitor

orientationMonitor

info.webinsel.util.swing.SwingChangeMonitor orientationMonitor

legendNumbersPanel

JPanel legendNumbersPanel

legendPositionTextField

JFormattedTextField legendPositionTextField

legendPositionMonitor

info.webinsel.util.swing.SwingChangeMonitor legendPositionMonitor

minTreeDistanceInput

DistanceValueInput minTreeDistanceInput

legendOrderLabel

JLabel legendOrderLabel

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

colorChooser

JColorChooser colorChooser

colorMonitor

info.webinsel.util.swing.SwingChangeMonitor colorMonitor

lineColorPanel

JPanel lineColorPanel

otherLineFormatsPanel

JPanel otherLineFormatsPanel

lineWidthInput

DistanceValueInput lineWidthInput

cornerRadiusInput

DistanceValueInput cornerRadiusInput

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

owner

ElementFormatsDialog owner

alignmentPanel

JPanel alignmentPanel

leftRadioButton

JRadioButton leftRadioButton

rightRadioButton

JRadioButton rightRadioButton

treeWidthRadioButton

JRadioButton treeWidthRadioButton

alignGroup

ButtonGroup alignGroup

alignMonitor

info.webinsel.util.swing.SwingChangeMonitor alignMonitor

increaseMonitor

info.webinsel.util.swing.SwingChangeMonitor increaseMonitor

startMonitor

info.webinsel.util.swing.SwingChangeMonitor startMonitor

IntervalPanel

JPanel IntervalPanel

treeDistanceInput

DistanceValueInput treeDistanceInput

widthInput

ScaleValueInput widthInput

heightInput

DistanceValueInput heightInput

smallIntervalInput

info.webinsel.util.swing.DecimalInput smallIntervalInput

longIntervalInput

info.webinsel.util.swing.DecimalInput longIntervalInput

dimensionsPanel

JPanel dimensionsPanel

startPanel

JPanel startPanel

zeroLeftRadioButton

JRadioButton zeroLeftRadioButton

zeroRightRadioButton

JRadioButton zeroRightRadioButton

zeroPosGroup

ButtonGroup zeroPosGroup

labelingPanel

JPanel labelingPanel

directionPanel

JPanel directionPanel

incRadioButton

JRadioButton incRadioButton

decRadioButton

JRadioButton decRadioButton

increaseGroup

ButtonGroup increaseGroup

Package info.bioinfweb.treegraph.gui.dialogs.exporttographic

Class info.bioinfweb.treegraph.gui.dialogs.exporttographic.ExportToGraphicDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

dimensionsPanel

JPanel dimensionsPanel

resolutionInput

ResolutionInput resolutionInput

widthLabel

JLabel widthLabel

heightLabel

JLabel heightLabel

widthTextField

JTextField widthTextField

heightTextField

JTextField heightTextField

unitComboBox

JComboBox unitComboBox

spacerLabel

JLabel spacerLabel

fileChooser

JFileChooser fileChooser

fileChooserPanel

JPanel fileChooserPanel

outerPreferencesPanel

JPanel outerPreferencesPanel

commandPanel

JPanel commandPanel

openRadioButton

JRadioButton openRadioButton

printRadioButton

JRadioButton printRadioButton

noneRadioButton

JRadioButton noneRadioButton

commandGroup

ButtonGroup commandGroup

lastSelection

int lastSelection

Used to convert the width and height values if their unit is changed by the user.

decimalFormat

DecimalFormat decimalFormat

aspectRatio

float aspectRatio

preferencesPanel

PreferencesPanel preferencesPanel

treeFrame

TreeInternalFrame treeFrame

Class info.bioinfweb.treegraph.gui.dialogs.exporttographic.JPEGPrefPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

qualityLabel

JLabel qualityLabel

qualitySlider

JSlider qualitySlider

highestComprLabel

JLabel highestComprLabel

bestQualityLabel

JLabel bestQualityLabel

Class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TIFFPrefPanel extends TransparenrtBgPrefPanel implements Serializable

Serialized Fields

compressionMethodLabel

JLabel compressionMethodLabel

compressionMethodComboBox

JComboBox compressionMethodComboBox

Class info.bioinfweb.treegraph.gui.dialogs.exporttographic.TransparenrtBgPrefPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

transparentCheckBox

JCheckBox transparentCheckBox

Package info.bioinfweb.treegraph.gui.dialogs.formatbynodedata

Class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorAdapterListModel extends AbstractListModel implements Serializable

Serialized Fields

adapters

List<E> adapters

Class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorPreviewPanel extends JPanel implements Serializable

Serialized Fields

minColor

Color minColor

maxColor

Color maxColor

Class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.ColorsByNodeBranchDataDialog extends FormatsByNodeBranchDataDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

self

ColorsByNodeBranchDataDialog self

This field is necessary to acces this intance from the action listeners.

jContentPane

JPanel jContentPane

colorPanel

JPanel colorPanel

minMaxPanel

JPanel minMaxPanel

minColorButton

JButton minColorButton

colorPreviewPanel

ColorPreviewPanel colorPreviewPanel

maxColorButton

JButton maxColorButton

changeUndefinedCheckBox

JCheckBox changeUndefinedCheckBox

inheritToTerminalsCheckBox

JCheckBox inheritToTerminalsCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceAdapterListModel extends AbstractListModel implements Serializable

Serialized Fields

adapters

List<E> adapters

Class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.DistanceValuesByNodeBranchDataDialog extends FormatsByNodeBranchDataDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

distancesPanel

JPanel distancesPanel

minWidthInput

DistanceValueInput minWidthInput

maxWidthInput

DistanceValueInput maxWidthInput

changeUndefinedCheckBox

JCheckBox changeUndefinedCheckBox

inheritToTerminalsCheckBox

JCheckBox inheritToTerminalsCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.formatbynodedata.FormatsByNodeBranchDataDialog extends EditDialog implements Serializable

Serialized Fields

errorHelpCode

int errorHelpCode

sourceComboBox

JComboBox sourceComboBox

sourcePanel

JPanel sourcePanel

targetPanel

JPanel targetPanel

targetScrollPane

JScrollPane targetScrollPane

targetList

JList targetList

targetListModel

ListModel targetListModel

Package info.bioinfweb.treegraph.gui.dialogs.io

Class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

fileChooserPanel

JPanel fileChooserPanel

fileChooser

JFileChooser fileChooser

idNamePanel

JPanel idNamePanel

idNameTextField

JTextField idNameTextField

terminalDataInput

NodeDataInput terminalDataInput

prefixLabel

JLabel prefixLabel

targetTypePanel

JPanel targetTypePanel

labelRadioButton

JRadioButton labelRadioButton

branchDataRadioButton

JRadioButton branchDataRadioButton

nodeDataRadioButton

JRadioButton nodeDataRadioButton

terminalsPanel

JPanel terminalsPanel

terminalsLabel

JLabel terminalsLabel

targetDataButtonGroup

ButtonGroup targetDataButtonGroup

importButtonGroup

ButtonGroup importButtonGroup

translateInternalsCheckBox

JCheckBox translateInternalsCheckBox

importPanel

JPanel importPanel

nodeNamesRadioButton

JRadioButton nodeNamesRadioButton

branchLengthsRadioButton

JRadioButton branchLengthsRadioButton

nexusFilter

NexusFilter nexusFilter

Class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

fileChooser

JFileChooser fileChooser

nexusFilter

NexusFilter nexusFilter

nodeDataPanel

JPanel nodeDataPanel

internalInput

NodeDataInput internalInput

leafInput

NodeDataInput leafInput

branchLengthInput

NodeDataInput branchLengthInput

internalLabel

JLabel internalLabel

leafLabel

JLabel leafLabel

branchLengthCheckBox

JCheckBox branchLengthCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog extends EditDialog implements Serializable

Serialized Fields

option

FileDialog.Option option

Class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

fileChooserPanel

JPanel fileChooserPanel

fileChooser

JFileChooser fileChooser

internalNodesPanel

JPanel internalNodesPanel

nodeNamesDataInput

NewNodeDataInput nodeNamesDataInput

branchLengthsDataInput

NewNodeDataInput branchLengthsDataInput

translateInternalNodesCheckBox

JCheckBox translateInternalNodesCheckBox

xtgFilter

XTGFilter xtgFilter

nexusFilter

NexusFilter nexusFilter

branchLengthsPanel

JPanel branchLengthsPanel

Class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

trees

String[] trees

translTable

TranslTable translTable

translateInternals

boolean translateInternals

currentTree

int currentTree

jContentPane

JPanel jContentPane

selectionPanel

JPanel selectionPanel

treeComboBox

JComboBox treeComboBox

previewPanel

JPanel previewPanel

previewScrollPane

JScrollPane previewScrollPane

treeViewPanel

TreeViewPanel treeViewPanel

Package info.bioinfweb.treegraph.gui.dialogs.nodedatainput

Class info.bioinfweb.treegraph.gui.dialogs.nodedatainput.NodeDataComboBoxModel extends AbstractListModel implements Serializable

Serialized Fields

adapters

Vector<E> adapters

selected

NodeDataAdapter selected

Package info.bioinfweb.treegraph.gui.mainframe

Class info.bioinfweb.treegraph.gui.mainframe.MainFrame extends JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

actionManagement

ActionManagement actionManagement

windowListener

WindowListener windowListener

mainMenu

JMenuBar mainMenu

fileMenu

JMenu fileMenu

editMenu

JMenu editMenu

viewMenu

JMenu viewMenu

helpMenu

JMenu helpMenu

jContentPane

JPanel jContentPane

desktopPane

info.webinsel.util.swing.ExtendedDesktopPane desktopPane

windowMenu

JMenu windowMenu

formatMenu

JMenu formatMenu

selectMenu

JMenu selectMenu

toolBarPanel

JPanel toolBarPanel

undoMenu

JMenu undoMenu

redoMenu

JMenu redoMenu

Class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel extends JPanel implements Serializable

Serialized Fields

mainFrame

MainFrame mainFrame

orientation

ToolBarPanel.ToolBarOrientation orientation

upperToolBar

JToolBar upperToolBar

lowerToolBar

JToolBar lowerToolBar

editFormatsGBC

GridBagConstraints editFormatsGBC

fileViewWindowGBC

GridBagConstraints fileViewWindowGBC

Package info.bioinfweb.treegraph.gui.mainframe.tools

Class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup extends info.webinsel.util.swing.ToolBarPopup implements Serializable

serialVersionUID: 1L

Serialized Fields

jContentPane

JPanel jContentPane

input

DistanceValueInput input

slider

JSlider slider

Package info.bioinfweb.treegraph.gui.treeframe

Class info.bioinfweb.treegraph.gui.treeframe.HelpButton extends JButton implements Serializable

Class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame extends JInternalFrame implements Serializable

Serialized Fields

document

Document document

internalFrameListener

InternalFrameListener internalFrameListener

jContentPane

JPanel jContentPane

scrollPane

JScrollPane scrollPane

treeViewPanel

TreeViewPanel treeViewPanel

treeViewInputListener

TreeEditlInputListener treeViewInputListener

Class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

selection

TreeSelection selection

document

Document document

zoom

float zoom

painterType

PositionPaintType painterType

treeViewListeners

Vector<E> treeViewListeners

Package info.bioinfweb.treegraph.gui.treeframe.ruler

Class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler extends JPanel implements Serializable

Serialized Fields

orientation

RulerOrientation orientation

unit

RulerUnit unit

treeViewPanel

TreeViewPanel treeViewPanel

Class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField extends JComponent implements Serializable

Serialized Fields

horizontalRuler

TreeViewRuler horizontalRuler

verticalRuler

TreeViewRuler verticalRuler