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## T

table - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
table - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
tableScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
tableScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
tableScrollPane - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
TableSeparatorPanel - Class in info.bioinfweb.treegraph.gui.dialogs.io
  Used to enter a column separator to import tables from text files.
TableSeparatorPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel
tabRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel
tabs - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
TAG_BRANCH - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_DOC_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_GLOBAL_FORMATS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_HIDDEN_DATA - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_ICON_LABEL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_LABEL_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_LEAF_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_LEGEND - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_LEGEND_MARGIN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_NODE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_ROOT - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_SCALE_BAR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_TEXT_LABEL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
TAG_TREE - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
targetAdapters - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsByNodeBranchDataEdit
targetAdapters - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesBackup
targetAdapters - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit
targetAdapters - Variable in class info.bioinfweb.treegraph.document.undo.format.ScaleDistanceValuesEdit
targetDataButtonGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
targetLeafsAdapter - Variable in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
  The column that contains the terminal identifiers in the target document (usually nodes names)
targetList - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog
targetListModel - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog
targetNode - Variable in class info.bioinfweb.treegraph.document.Branch
targetPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog
targetScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog
targetTypePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
TERMINAL_SYMBOL - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars
terminalDataInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
terminalsLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
terminalsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
text - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken
text - Variable in class info.bioinfweb.treegraph.document.TextElementData
TEXT - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.UnknownIcon
TEXT - Static variable in class info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction
TEXT_CENTIMETER - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField
TEXT_INCH - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField
textColor - Variable in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
TextColorOperator - Class in info.bioinfweb.treegraph.document.format.operate
TextColorOperator(Color) - Constructor for class info.bioinfweb.treegraph.document.format.operate.TextColorOperator
TextElement - Interface in info.bioinfweb.treegraph.document
textElement - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
TextElementData - Class in info.bioinfweb.treegraph.document
  This class is used to store data of tree elements which can either be a string or a decimal value.
TextElementData() - Constructor for class info.bioinfweb.treegraph.document.TextElementData
TextElementData(String) - Constructor for class info.bioinfweb.treegraph.document.TextElementData
TextElementData(double) - Constructor for class info.bioinfweb.treegraph.document.TextElementData
TextElementDataAdapter - Class in info.bioinfweb.treegraph.document.nodebranchdata
  This abstract class implements basic funktionalities for adapters that deal with data stored in a `TextElementData`-object.
TextElementDataAdapter() - Constructor for class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter
TextElementEdit - Class in info.bioinfweb.treegraph.document.undo.edit
TextElementEdit(Document, TextElement, TextElementData) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit
textField - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NewNodeBranchDataInput
TextFormats - Interface in info.bioinfweb.treegraph.document.format
textFormats - Variable in class info.bioinfweb.treegraph.document.format.TextLabelFormats
textHeight - Variable in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
textHeight - Variable in class info.bioinfweb.treegraph.document.format.operate.TextHeightOperator
TextHeightOperator - Class in info.bioinfweb.treegraph.document.format.operate
TextHeightOperator(DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.operate.TextHeightOperator
TextLabel - Class in info.bioinfweb.treegraph.document
TextLabel(Labels) - Constructor for class info.bioinfweb.treegraph.document.TextLabel
textLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
TextLabelAdapter - Class in info.bioinfweb.treegraph.document.nodebranchdata
TextLabelAdapter(String, DecimalFormat) - Constructor for class info.bioinfweb.treegraph.document.nodebranchdata.TextLabelAdapter
TextLabelFormats - Class in info.bioinfweb.treegraph.document.format
TextLabelFormats(Label, boolean, int, int) - Constructor for class info.bioinfweb.treegraph.document.format.TextLabelFormats
TextLabelFormats(Label) - Constructor for class info.bioinfweb.treegraph.document.format.TextLabelFormats
textLabelPresent - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
TextOrientation - Enum in info.bioinfweb.treegraph.document.format
TextOrientation() - Constructor for enum info.bioinfweb.treegraph.document.format.TextOrientation
TextOrientationOperator - Class in info.bioinfweb.treegraph.document.format.operate
TextOrientationOperator(TextOrientation) - Constructor for class info.bioinfweb.treegraph.document.format.operate.TextOrientationOperator
textPos - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken
textPos - Variable in class info.bioinfweb.treegraph.document.position.LegendPositionData
TextStreamReader - Class in info.bioinfweb.treegraph.document.io
TextStreamReader() - Constructor for class info.bioinfweb.treegraph.document.io.TextStreamReader
textStyle - Variable in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
TextStyleOperator - Class in info.bioinfweb.treegraph.document.format.operate
TextStyleOperator(boolean, int) - Constructor for class info.bioinfweb.treegraph.document.format.operate.TextStyleOperator
TG_URL - Static variable in class info.bioinfweb.treegraph.Main
TGFFactory - Class in info.bioinfweb.treegraph.document.io.tgf
TGFFactory() - Constructor for class info.bioinfweb.treegraph.document.io.tgf.TGFFactory
TGFFilter - Class in info.bioinfweb.treegraph.document.io.tgf
TGFFilter() - Constructor for class info.bioinfweb.treegraph.document.io.tgf.TGFFilter
TGFReader - Class in info.bioinfweb.treegraph.document.io.tgf
TGFReader() - Constructor for class info.bioinfweb.treegraph.document.io.tgf.TGFReader
TIFFFactory - Class in info.bioinfweb.treegraph.graphics.export.tiff
TIFFFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFactory
TIFFFilter - Class in info.bioinfweb.treegraph.graphics.export.tiff
TIFFFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter
TIFFPrefPanel - Class in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic
TIFFPrefPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TIFFPrefPanel
TIFFWriter - Class in info.bioinfweb.treegraph.graphics.export.tiff
TIFFWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.tiff.TIFFWriter
TileHorizontalAction - Class in info.bioinfweb.treegraph.gui.actions.window
TileHorizontalAction() - Constructor for class info.bioinfweb.treegraph.gui.actions.window.TileHorizontalAction
tileInternalFramesHorizontal() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
tileInternalFramesVertical() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
TileVerticalAction - Class in info.bioinfweb.treegraph.gui.actions.window
TileVerticalAction() - Constructor for class info.bioinfweb.treegraph.gui.actions.window.TileVerticalAction
TitedCrossIcon - Class in info.bioinfweb.treegraph.graphics.positionpaint.labelicons
TitedCrossIcon() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TitedCrossIcon
TitedHexagonIcon - Class in info.bioinfweb.treegraph.graphics.positionpaint.labelicons
TitedHexagonIcon() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TitedHexagonIcon
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
title() - Method in interface info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatTab
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.NodeMarginPanel
title() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
titleLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
toArray() - Method in class info.bioinfweb.treegraph.document.format.operate.OperatorMap
toArray(T[]) - Method in class info.bioinfweb.treegraph.document.Legends
toArray(T[]) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
tokens - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
tokens - Variable in class info.bioinfweb.treegraph.document.io.nexus.NexusCommand
TokenType - Enum in info.bioinfweb.treegraph.document.io.newick
TokenType() - Constructor for enum info.bioinfweb.treegraph.document.io.newick.TokenType
toolBarPanel - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
ToolBarPanel - Class in info.bioinfweb.treegraph.gui.mainframe
ToolBarPanel(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel
ToolBarPanel.ToolBarOrientation - Enum in info.bioinfweb.treegraph.gui.mainframe
ToolBarPanel.ToolBarOrientation() - Constructor for enum info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel.ToolBarOrientation
top - Variable in class info.bioinfweb.treegraph.document.format.Margin
top - Variable in class info.bioinfweb.treegraph.document.position.PositionData
top - Variable in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
topic - Variable in class info.bioinfweb.treegraph.gui.actions.help.HelpTopicAction
toRect(float) - Method in class info.bioinfweb.treegraph.document.position.PositionData
toString() - Method in class info.bioinfweb.treegraph.document.AbstractTextElement
toString() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
toString() - Method in enum info.bioinfweb.treegraph.document.io.newick.TokenType
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenBranchDataAdapter
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenNodeDataAdapter
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NewHiddenBranchDataAdapter
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NewHiddenNodeDataAdapter
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NewTextLabelAdapter
toString() - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter
  A description of the adapter that is readable by the user should be returned here.
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NodeNameAdapter
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextLabelAdapter
toString() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter
toString() - Method in class info.bioinfweb.treegraph.document.position.PositionData
toString() - Method in class info.bioinfweb.treegraph.document.TextElementData
  Returns either the stored string, the decimal value as a sting or `null` if the object is empty.
toString() - Method in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.LeafField
toString(String) - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.AbstractLabelAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.coloradapters.BranchLineColorAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.coloradapters.LabelLineColorAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.coloradapters.LabelTextColorAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.coloradapters.NodeLineColorAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.coloradapters.NodeTextColorAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.BranchLineWidthAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.BranchMinLengthAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.BranchSpaceAboveAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.BranchSpaceBelowAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.CornerRadiusAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.IconHeightAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.IconWidthAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LabelMarginBottomAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LabelMarginLeftAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LabelMarginRightAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LabelMarginTopAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LabelTextHeightAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LeafMarginBottomAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LeafMarginLeftAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LeafMarginRightAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LeafMarginTopAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LegendLineWidthAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LegendMarginBottomAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LegendMarginLeftAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LegendMarginRightAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LegendMarginTopAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LegendSpacingAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.LegendTextHeightAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.NodeLineWidthAdapter
toString() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.distanceadapters.NodeTextHeightAdapter
transcoderClass - Variable in class info.bioinfweb.treegraph.graphics.export.SVGTranscodeWriter
TRANSL_TABLE_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
TRANSL_TABLE_SEPARATOR_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
translateInternalNodesCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
translateInternals - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
translateInternals - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
translateInternalsCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
translTable - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
translTable - Variable in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument
TranslTable - Class in info.bioinfweb.treegraph.document.io.nexus
  Stores the content of a taxon table in a nexus document.
TranslTable() - Constructor for class info.bioinfweb.treegraph.document.io.nexus.TranslTable
translTable - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
TransparenrtBgPrefPanel - Class in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic
TransparenrtBgPrefPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TransparenrtBgPrefPanel
  This is the default constructor
transparentCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TransparenrtBgPrefPanel
tree - Variable in class info.bioinfweb.treegraph.document.Document
tree - Variable in class info.bioinfweb.treegraph.document.Legends
Tree - Class in info.bioinfweb.treegraph.document
  Intances of this class provide an enviroment for the rcursive data-structure of tree-elements without their formats.
Tree() - Constructor for class info.bioinfweb.treegraph.document.Tree
TREE_COMMAND - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
TREE_COMMAND_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
TREE_NAME_SEPERATOR - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
TREE_WIDTH_RATIO - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
TreeClipboard - Class in info.bioinfweb.treegraph.document.clipboard
  This class is a clipboard for tree elements.
TreeClipboard() - Constructor for class info.bioinfweb.treegraph.document.clipboard.TreeClipboard
TreeClipboardException - Exception in info.bioinfweb.treegraph.document.clipboard
TreeClipboardException() - Constructor for exception info.bioinfweb.treegraph.document.clipboard.TreeClipboardException
TreeClipboardException(String, Throwable) - Constructor for exception info.bioinfweb.treegraph.document.clipboard.TreeClipboardException
TreeClipboardException(String) - Constructor for exception info.bioinfweb.treegraph.document.clipboard.TreeClipboardException
TreeClipboardException(Throwable) - Constructor for exception info.bioinfweb.treegraph.document.clipboard.TreeClipboardException
treeComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
treeDistance - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
treeDistanceInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
TreeEditlInputListener - Class in info.bioinfweb.treegraph.gui.treeframe
  This listener implements the reactions to user inputs for editing the tree in a tree window.
TreeEditlInputListener() - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener
TreeEditlInputListener(TreeViewPanel) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener
TreeElement - Interface in info.bioinfweb.treegraph.document
  Implemented by document elements which are part of the tree (unlike e.g. legends or the scale bar).
treeFrame - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
TreeGraphAction - Class in info.bioinfweb.treegraph.gui.actions
TreeGraphAction() - Constructor for class info.bioinfweb.treegraph.gui.actions.TreeGraphAction
TreeInternalFrame - Class in info.bioinfweb.treegraph.gui.treeframe
TreeInternalFrame(Document) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
  This is the xxx default constructor
TreePainter - Interface in info.bioinfweb.treegraph.graphics.positionpaint
TreePath - Class in info.bioinfweb.treegraph.document
  This class stores the path to an node from the root of the tree or a specified ancestor.
TreePath(Node) - Constructor for class info.bioinfweb.treegraph.document.TreePath
  Creates a path from the specified leaf to the root of the tree.
TreePath(Node, Node) - Constructor for class info.bioinfweb.treegraph.document.TreePath
  Creates a path from the specified leaf to the specified ancestor (not including the ancestor itself).
TreePositioner - Interface in info.bioinfweb.treegraph.graphics.positionpaint
trees - Variable in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument
trees - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
TREES_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
treeScrollPane - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
TreeSelection - Class in info.bioinfweb.treegraph.gui.treeframe
  This class manages the selection of multiple elements in an tree view panel.
TreeSelection(TreeViewPanel) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
TreeSelectionDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
TreeSelectionDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
TreeSelector - Interface in info.bioinfweb.treegraph.document.io
TreeSerializer - Class in info.bioinfweb.treegraph.document
TreeSerializer() - Constructor for class info.bioinfweb.treegraph.document.TreeSerializer
treesToArray() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument
treeViewInputListener - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
treeViewListeners - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
treeViewPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
treeViewPanel - Variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
treeViewPanel - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
TreeViewPanel - Class in info.bioinfweb.treegraph.gui.treeframe
  Shows the tree saved in the associated document in a swing GUI.
TreeViewPanel(Document) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
  Creates a new swing-panel which shows the tree contained in document.
TreeViewPanelListener - Interface in info.bioinfweb.treegraph.gui.treeframe
TreeViewRuler - Class in info.bioinfweb.treegraph.gui.treeframe.ruler
TreeViewRuler(RulerOrientation, TreeViewPanel) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
TreeViewRulerConstants - Interface in info.bioinfweb.treegraph.gui.treeframe.ruler
TreeViewRulerUnitField - Class in info.bioinfweb.treegraph.gui.treeframe.ruler
TreeViewRulerUnitField(TreeViewRuler, TreeViewRuler) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField
treeWidthRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
TriangleIcon - Class in info.bioinfweb.treegraph.graphics.positionpaint.labelicons
TriangleIcon() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TriangleIcon
type - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken
type - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
type - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
type - Variable in class info.bioinfweb.treegraph.gui.actions.view.ChangePainterIDAction
typeLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog

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