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## F

factor - Variable in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit
factor - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit
factor - Variable in class info.bioinfweb.treegraph.document.undo.format.ScaleDistanceValuesEdit
factories - Variable in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
factories - Variable in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
factories - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
field - Variable in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.LeafField
FIELD_END_SYMBOL - Static variable in class info.bioinfweb.treegraph.document.io.newick.CommentDataReader
FIELD_START_SYMBOL - Static variable in class info.bioinfweb.treegraph.document.io.newick.CommentDataReader
FILE_NAME - Static variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RecentlyUsedExpressionsListModel
FILE_PREFIX - Static variable in class info.bioinfweb.treegraph.gui.actions.file.ExportToPDFAction
FILE_SUFFIX - Static variable in class info.bioinfweb.treegraph.gui.actions.file.ExportToPDFAction
fileButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
fileChooser - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
fileChooser - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog
fileChooser - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
fileChooser - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
fileChooser - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
fileChooser - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
fileChooser - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
fileChooserPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
fileChooserPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog
fileChooserPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
fileChooserPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
FileDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
  All dialogs that deal with files shoud be inherited from this class.
FileDialog(Dialog, FileDialog.Option) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog
FileDialog(Frame, FileDialog.Option) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog
FileDialog.Option - Enum in info.bioinfweb.treegraph.gui.dialogs.io
FileDialog.Option() - Constructor for enum info.bioinfweb.treegraph.gui.dialogs.io.FileDialog.Option
fileMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
filePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
filePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
fileTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
fileViewWindowGBC - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel
fill() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.LabelIconMap
fill() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelIconComboBoxModel
fillAdapterList(Node) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
fillEntryList() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
fillFactoryList() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
fillList() - Method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
fillList() - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
fillList() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.PreferencesPanelFactory
fillMap() - Method in class info.bioinfweb.treegraph.gui.actions.ActionManagement
  All `Action` objects used in TreeGraph 2 added to the `HashMap` in this mehtod.
fillNodeList(Node) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
fillPopupActions() - Method in class info.bioinfweb.treegraph.gui.actions.ActionManagement
filter - Variable in class info.bioinfweb.treegraph.graphics.export.SingletonGraphicsFactory
findAllocationEnd(String, int) - Method in class info.bioinfweb.treegraph.document.io.newick.CommentDataReader
findBlockEnd(NexusCommand[], int, int) - Static method in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
findCommand(NexusCommand[], int, int, Pattern, Pattern) - Static method in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
  Searches for the first occurence of the given command.
findDecimal(List<String>, double) - Method in class info.bioinfweb.treegraph.document.undo.file.ApplyNameTableEdit
  Returns the index of the first string that represents the specified `double` value.
findEquivilant(Node) - Method in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit
  Returns the node in the new tree (copy of the old) with the equivilant position to `old`.
findEquivilant(Branch) - Method in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit
  Returns the branch in the new tree (copy of the old) with the equivilant position to `old`.
findFieldEnd(String, int) - Method in class info.bioinfweb.treegraph.document.io.newick.CommentDataReader
findHighestConflict(Node, double, Node, NodeInfo) - Method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
  This method is the recursive part called by `findHighestConflict`.
findNode(Node) - Method in class info.bioinfweb.treegraph.document.TreePath
  Finds the node specidied by the stored path relative to the given root node.
findSourceNodeWithAllLeafs(Node, LeafField) - Method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
findString(List<String>, String) - Method in class info.bioinfweb.treegraph.document.undo.file.ApplyNameTableEdit
findTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
fireChangeHappened() - Method in class info.bioinfweb.treegraph.document.Document
  Alerts all registered views to display made changes.
fireNewIDSelected(boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NewNodeBranchDataInput
fireSelectionChanged() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
fireSizeChanged() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
fireZoomChanged() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
firstInstance - Static variable in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
firstInstance - Static variable in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
firstInstance - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.LabelIconMap
firstInstance - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPainter
firstInstance - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPositioner
firstInstance - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
firstInstance - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
firstInstance - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
firstInstance - Static variable in class info.bioinfweb.treegraph.gui.CurrentDirectoryModel
firstInstance - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.PreferencesPanelFactory
firstInstance - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
firstInstance - Static variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
firstInstance - Static variable in class info.bioinfweb.treegraph.Main
firstLineLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog
firstRedone - Variable in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit
firstSibling - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertSiblingEdit
FitZoomToHeightAction - Class in info.bioinfweb.treegraph.gui.actions.view
FitZoomToHeightAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.view.FitZoomToHeightAction
FitZoomToWidthAction - Class in info.bioinfweb.treegraph.gui.actions.view
FitZoomToWidthAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthAction
FitZoomToWidthHeightAction - Class in info.bioinfweb.treegraph.gui.actions.view
FitZoomToWidthHeightAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthHeightAction
FONT - Static variable in interface info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerConstants
  The font used to label the ruler
FontColorPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats
FontColorPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel
fontFamilyList - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
fontFamilyMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
fontFamilyPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
fontFamilyTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
FontFormatsPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats
FontFormatsPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
  This is the default constructor
fontHeightInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
fontHeightPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
fontName - Variable in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
fontName - Variable in class info.bioinfweb.treegraph.document.format.operate.FontNameOperator
FontNameOperator - Class in info.bioinfweb.treegraph.document.format.operate
FontNameOperator(String) - Constructor for class info.bioinfweb.treegraph.document.format.operate.FontNameOperator
fontStylePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
FORMAT_EXAMPLE - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
formatByFile(File) - Method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
formatByFileName(String) - Method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
formatByFileName(String) - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
formatColor(Color) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
formatColorByte(int) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
formatLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
formatMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
formatName(Node, NodeBranchDataAdapter) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringWriter
FormatOperator - Interface in info.bioinfweb.treegraph.document.format.operate
formatPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
formats - Variable in class info.bioinfweb.treegraph.document.Branch
formats - Variable in class info.bioinfweb.treegraph.document.format.operate.ScaleBarFormatsOperator
formats - Variable in class info.bioinfweb.treegraph.document.IconLabel
formats - Variable in class info.bioinfweb.treegraph.document.Legend
formats - Variable in class info.bioinfweb.treegraph.document.Node
formats - Variable in class info.bioinfweb.treegraph.document.ScaleBar
formats - Variable in class info.bioinfweb.treegraph.document.TextLabel
formats - Variable in class info.bioinfweb.treegraph.document.Tree
formats - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPreviewPanel
FormatsByNodeBranchDataDialog - Class in info.bioinfweb.treegraph.gui.dialogs.specialformats
  Superclass of all dialogs which set formats by node/branch data.
FormatsByNodeBranchDataDialog(Dialog, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog
FormatsByNodeBranchDataDialog(Frame, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog
formatsTabbedPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
formatsTabbedPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
formatTextElement(TextElement) - Static method in class info.bioinfweb.treegraph.document.TextElementData
  Returns the formatted value of the given text element.
formatTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
formatTextStyle(TextFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
FormatUtils - Class in info.bioinfweb.treegraph.document.format
  Provides general format functionalities.
FormatUtils() - Constructor for class info.bioinfweb.treegraph.document.format.FormatUtils
formatValue(DecimalFormat) - Method in class info.bioinfweb.treegraph.document.TextElementData
  Return the contained string or the contained formated decimal value or an empty string is the object contains no data.
frame - Variable in class info.bioinfweb.treegraph.document.Document
frame - Variable in class info.bioinfweb.treegraph.gui.actions.window.SelectFrameAction
FREE_NAME_BLANK - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars
FreeHEPWriter - Class in info.bioinfweb.treegraph.graphics.export
FreeHEPWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.FreeHEPWriter

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV LETTER NEXT LETTER | FRAMES NO FRAMES

A B C D E F G H I J K L M N O P Q R S T U V W X Z