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## W

WarningEdit - Interface in info.bioinfweb.treegraph.document.undo
wasDelimited() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken
WHITESPACE_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusCommand
WHITESPACE_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
whitespaceCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog
width - Variable in class info.bioinfweb.treegraph.document.format.DistanceDimension
width - Variable in class info.bioinfweb.treegraph.document.format.operate.IconWidthOperator
width - Variable in class info.bioinfweb.treegraph.document.format.operate.LineWidthOperator
width - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
width - Variable in class info.bioinfweb.treegraph.document.position.PositionData
WIDTH_OPTION - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator
widthInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
widthLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
widthTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
WIKI_URL - Static variable in class info.bioinfweb.treegraph.Main
wikiHelp - Variable in class info.bioinfweb.treegraph.Main
WINDOW_MENU_ITEMS_COUNT - Static variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
windowListener - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
windowMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
wordsOnly() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog
wordsOnlyCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
wordsOnlyCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog
write(Document, File) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
write(Document, File, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
write(Document, OutputStream) - Method in interface info.bioinfweb.treegraph.document.io.DocumentWriter
write(Document, File) - Method in interface info.bioinfweb.treegraph.document.io.DocumentWriter
write(Document, OutputStream, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in interface info.bioinfweb.treegraph.document.io.DocumentWriter
write(Document, File, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in interface info.bioinfweb.treegraph.document.io.DocumentWriter
write(Tree, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringWriter
write(Document, OutputStream, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickWriter
write(Document, OutputStream) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickWriter
write(Document, OutputStream, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusWriter
write(Document, OutputStream) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusWriter
write(Document, OutputStream) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
write(Document, OutputStream, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
  A call of this method is identical with calling `XTGWriter.write(info.bioinfweb.treegraph.document.Document, java.io.OutputStream)` becuase the tgx format supports writing any number of labels by default and there is no need to replace internal node names by label values.
write(Document, TreePainter, GraphicWriterHints, File) - Method in class info.bioinfweb.treegraph.graphics.export.AbstractGraphicWriter
write(Document, TreePainter, GraphicWriterHints, OutputStream) - Method in class info.bioinfweb.treegraph.graphics.export.FreeHEPWriter
write(Document, TreePainter, GraphicWriterHints, OutputStream) - Method in interface info.bioinfweb.treegraph.graphics.export.GraphicWriter
write(Document, TreePainter, GraphicWriterHints, File) - Method in interface info.bioinfweb.treegraph.graphics.export.GraphicWriter
write(Document, TreePainter, GraphicWriterHints, OutputStream) - Method in class info.bioinfweb.treegraph.graphics.export.SVGTranscodeWriter
  Writes the given document to the given stream in the graphic format provided by the transcoder-class specified in the constructor.
writeAnchor(LegendFormats, int) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeCommand(OutputStreamWriter, String) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusWriter
writeData(OutputStream, Node, ExportNodeDataTableModel.Nodes) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
writeData(File, Node, ExportNodeDataTableModel.Nodes) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
writeDistanceDimension(String, DistanceDimension) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeGlobalFormats(GlobalFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeHiddenDataMap(HiddenDataMap) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeLabelBlock(Labels, boolean) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeLegends(Legends) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeLineAttr(LineFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeMargin(String, Margin) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writer - Variable in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writer - Variable in class info.bioinfweb.treegraph.graphics.export.SingletonGraphicsFactory
writer - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
writeScaleBar(ScaleBar) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeScaleValue(String, ScaleValue) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeSubtree(Node, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringWriter
writeSubtree(Node) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeSubtree(Node) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
  Writes the node data of the subtree under root as a text.
writeTextElementData(TextElementData) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeTextFormatsAttr(TextFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
writeTextFormatsAttr(TextFormats, String) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter

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