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## P

paint(Graphics2D, float, float, IconLabelFormats, float) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.labelicons.LabelIcon
paint(Graphics2D, float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.ShapeLabelIcon
  Paints the shape of the implementing class depending on the specified formats and restores the current `Stroke` after the operation.
paint(Graphics2D, float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.UnknownIcon
  Displays a questionmark.
paint(Graphics) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPreviewPanel
paint(Graphics) - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorPreviewPanel
PaintableElement - Interface in info.bioinfweb.treegraph.document
paintBranch(Branch) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintComponent(Graphics) - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
paintComponent(Graphics) - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField
paintComponent(Graphics) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
paintDimensions - Variable in class info.bioinfweb.treegraph.document.Tree
painters - Variable in class info.bioinfweb.treegraph.document.Document
painterType - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
paintIconPreview() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel
paintInternalNode(Node) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
  Paints the given node.
paintLabelBlock(Labels, boolean) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintLeaf(Node) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintLegend(Legend) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintPointNode(Node) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintPreview(Graphics2D, double) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
paintScaleBar(ScaleBar) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintSelection(ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintStart - Variable in class info.bioinfweb.treegraph.document.Tree
paintSubtree(Node) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintText(String, TextFormats, float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintTree(Graphics2D, Document, TreeSelection, int, int, float, boolean) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
paintTree(Graphics2D, Document, TreeSelection, int, int, float, boolean) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.TreePainter
panels - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.PreferencesPanelFactory
parent - Variable in class info.bioinfweb.treegraph.document.Node
parent - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveSubtreeEdit
parent - Variable in class info.bioinfweb.treegraph.document.undo.edit.PasteSubtreeEdit
parse(String) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickScanner
parse(String) - Static method in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
parseName(String) - Static method in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
parseNumericValues - Variable in class info.bioinfweb.treegraph.document.undo.file.ApplyNameTableEdit
parseNumericValuesCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog
parser - Variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
PasteAction - Class in info.bioinfweb.treegraph.gui.actions.edit
PasteAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.PasteAction
PasteAllLabelsEdit - Class in info.bioinfweb.treegraph.document.undo.edit
PasteAllLabelsEdit(Document, Branch, Label[]) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.PasteAllLabelsEdit
PasteLabelEdit - Class in info.bioinfweb.treegraph.document.undo.edit
PasteLabelEdit(Document, Branch, Label) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.PasteLabelEdit
PasteLegendEdit - Class in info.bioinfweb.treegraph.document.undo.edit
PasteLegendEdit(Document, Node, Node, Legend) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.PasteLegendEdit
pasteLegends() - Method in class info.bioinfweb.treegraph.document.undo.edit.LegendPaster
PasteRootEdit - Class in info.bioinfweb.treegraph.document.undo.edit
PasteRootEdit(Document, Node, Legend[]) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.PasteRootEdit
PasteSiblingEdit - Class in info.bioinfweb.treegraph.document.undo.edit
PasteSiblingEdit(Document, Node, Node, Legend[]) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.PasteSiblingEdit
PasteSubtreeEdit - Class in info.bioinfweb.treegraph.document.undo.edit
PasteSubtreeEdit(Document, Node, Node, Legend[]) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.PasteSubtreeEdit
path - Variable in class info.bioinfweb.treegraph.document.TreePath
pattern - Variable in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction
PDFFactory - Class in info.bioinfweb.treegraph.graphics.export.pdf
PDFFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.pdf.PDFFactory
PDFFilter - Class in info.bioinfweb.treegraph.graphics.export.pdf
PDFFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter
PDFWriter - Class in info.bioinfweb.treegraph.graphics.export.pdf
PDFWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.pdf.PDFWriter
performRedo() - Method in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit
performRedo() - Method in class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit
performRedo() - Method in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit
performRedo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit
performRedo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit
performRedo() - Method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
PHYLOGRAM_OPTION - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator
PhylogramFactory - Class in info.bioinfweb.treegraph.graphics.positionpaint
  The factory class for the phylogram/chronogram view.
PhylogramFactory() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramFactory
PhylogramPainter - Class in info.bioinfweb.treegraph.graphics.positionpaint
PhylogramPainter() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPainter
PhylogramPositioner - Class in info.bioinfweb.treegraph.graphics.positionpaint
PhylogramPositioner() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPositioner
PIXELS_PER_MM_100 - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
pixelsPerMillimeter - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
pixelsPerMillimeter() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
pixelsToMillimeters(float, float) - Static method in class info.bioinfweb.treegraph.document.format.DistanceValue
pixelsToMillimeters(float) - Method in class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput
PLAIN - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats
PNGFactory - Class in info.bioinfweb.treegraph.graphics.export.png
PNGFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.png.PNGFactory
PNGFilter - Class in info.bioinfweb.treegraph.graphics.export.png
PNGFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.png.PNGFilter
PNGWriter - Class in info.bioinfweb.treegraph.graphics.export.png
PNGWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.png.PNGWriter
POINTS_PER_MM - Static variable in class info.bioinfweb.treegraph.document.format.DistanceValue
pointsToMillimeters(float) - Static method in class info.bioinfweb.treegraph.document.format.DistanceValue
pointsToUnits(float, float) - Static method in class info.bioinfweb.treegraph.document.format.ScaleValue
popupActions - Variable in class info.bioinfweb.treegraph.gui.actions.ActionManagement
popupMenu - Variable in class info.bioinfweb.treegraph.gui.actions.ActionManagement
position - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats
position - Variable in class info.bioinfweb.treegraph.document.format.operate.LegendPositionOperator
position - Variable in exception info.bioinfweb.treegraph.document.io.newick.NewickException
position - Variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
position - Variable in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit
positionAll(Document, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
positionAll(Document, float) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.TreePositioner
PositionData - Class in info.bioinfweb.treegraph.document.position
PositionData() - Constructor for class info.bioinfweb.treegraph.document.position.PositionData
positionElements(Node, float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
  Positions the subtree under root.
positioners - Variable in class info.bioinfweb.treegraph.document.Document
positionLabelBlockX(Branch, boolean) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
positionLabelBlockY(Branch) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
positionLabelsToLeft - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
positionLegends(float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
  Positions all legends rigths if `startX`.
PositionPaintFactory - Class in info.bioinfweb.treegraph.graphics.positionpaint
PositionPaintFactory() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
PositionPaintType - Enum in info.bioinfweb.treegraph.graphics.positionpaint
PositionPaintType() - Constructor for enum info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintType
positionPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
positions - Variable in class info.bioinfweb.treegraph.document.ConcretePaintableElement
positionScaleBar(float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
  Positions the scale bar.
positiveExampleLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
ppiToPPM(float) - Static method in class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput
ppmmToPPI(float) - Static method in class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput
PRE_LEGEND_ANCHOR - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
predifinedTable - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
preferences - Variable in class info.bioinfweb.treegraph.Main
preferencesPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
PreferencesPanel - Interface in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic
  This interface should be implemented by all panels that are used to edit format specific preferences in the `ExportToGraphics`-dialog.
PreferencesPanelFactory - Class in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic
  This class provides instances of the accordant preferences panels to the different graphic formats TreeGraph can export data to.
PreferencesPanelFactory() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.PreferencesPanelFactory
prefixLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
preview() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
PREVIEW_SIZE - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel
previewLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
previewPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
previewPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
previewPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel
previewPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
previewScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
previewTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
PreviousDocumentAction - Class in info.bioinfweb.treegraph.gui.actions.window
PreviousDocumentAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.window.PreviousDocumentAction
previousUnit - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput
printRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
process(CommandLineReader) - Method in class info.bioinfweb.treegraph.cmd.CmdProcessor
processRooted - Variable in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
processSubtree(Node) - Method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
  Finds the support or conflict values in the source document.
put(String, TextElementData) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
put(String, Object) - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterHints
put(LabelIcon) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.LabelIconMap
putAll(Map<? extends String, ? extends TextElementData>) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
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