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## O

OctagonIcon - Class in info.bioinfweb.treegraph.graphics.positionpaint.labelicons
OctagonIcon() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.OctagonIcon
oldAnchors - Variable in class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit
oldColors - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsByNodeBranchDataEdit
oldData - Variable in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit
oldFormats - Variable in class info.bioinfweb.treegraph.document.undo.format.AutoPositionLabelsEdit
oldFormats - Variable in class info.bioinfweb.treegraph.document.undo.format.GlobalFormatsEdit
oldIDs - Variable in class info.bioinfweb.treegraph.document.undo.edit.ChangeLabelIDEdit
oldIDs - Variable in class info.bioinfweb.treegraph.document.undo.edit.RenameDataIDEdit
oldLegendFormats - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesBackup
oldLength - Variable in class info.bioinfweb.treegraph.document.undo.edit.BranchLengthEdit
oldNames - Variable in class info.bioinfweb.treegraph.document.undo.file.ApplyNameTableEdit
oldNames - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog
oldRoot - Variable in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit
oldRoot - Variable in class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit
oldScale - Variable in class info.bioinfweb.treegraph.document.undo.format.ScaleBranchLengthsEdit
oldTreeValues - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesBackup
oldValues - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit
oldValues - Variable in class info.bioinfweb.treegraph.document.undo.format.ScaleDistanceValuesEdit
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.DocumentAction
  Subclasses should implement this method instead of overriding `DocumentAction.actionPerformed(ActionEvent)`.
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CollapseNodeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CopyAllLabelsAction
  This Method must not be called if the selected element is not a branch.
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CopyElementAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CutAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.DeleteColumnAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeDownAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeUpAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.NewLegendAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.NewNodeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.PasteAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.RedoAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.RedoToAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.RerootAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SeparateBranchAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SetColumnTypeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.UndoAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.UndoToAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.EditDialogAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.CloseAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExitAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExportToPDFAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.ImportTableAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.NewDocumentAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.SaveAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.SaveAsAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.format.AutoPositionLabelsAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.format.ReanchorLegendAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.format.ShowHideScaleBarAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.format.ShowRootedAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.InvertSelectionAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectAllAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsInSubtreeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsWithIDAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInDocumentAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInSubtreeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsInSubtreeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsWithPosIndexAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectSubtreeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInDocumentAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInSubtreeAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.ChangePainterIDAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.SetZoomAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.window.NextDocumentAction
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.window.PreviousDocumentAction
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog
  This method is called in the implementation of apply if an valid file was selected.
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
oneElementSelected(TreeSelection) - Static method in class info.bioinfweb.treegraph.gui.actions.DocumentAction
  Tests if exactly one element (not none and not more) is contained in the given selection.
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewIconLabelsDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog
  Subclasses should implement `SpecialFormatsDialog.customizeTarget()` instead of overriding this method.
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog
  Subclasses should implement `SpecialFormatsDialog.customizeTarget()` instead of overriding this method.
OpenAction - Class in info.bioinfweb.treegraph.gui.actions.file
OpenAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.OpenAction
OpenDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
OpenDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
openInitialFile() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
openRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
OperatorMap - Class in info.bioinfweb.treegraph.document.format.operate
OperatorMap() - Constructor for class info.bioinfweb.treegraph.document.format.operate.OperatorMap
operators - Variable in class info.bioinfweb.treegraph.document.format.operate.OperatorMap
operators - Variable in class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit
OperatorsEdit - Class in info.bioinfweb.treegraph.document.undo.format
  This edit changes applies the specified formats to the specified document elements.
OperatorsEdit(Document, PaintableElement[], FormatOperator[]) - Constructor for class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit
option - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog
ORIENT_DOWN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ORIENT_HORIZONTAL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
ORIENT_UP - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
orientation - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats
orientation - Variable in class info.bioinfweb.treegraph.document.format.operate.TextOrientationOperator
orientation - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel
orientation - Variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
orientationGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
orientationMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
otherLineFormatsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel
outerPreferencesPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
owner - Variable in class info.bioinfweb.treegraph.document.format.LabelFormats
owner - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats
owner - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLabelEdit
owner - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
owner - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener
owner - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

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