A B C D E F G H I J K L M N O P Q R S T U V W X Z

I

icon - Variable in class info.bioinfweb.treegraph.document.format.IconLabelFormats

icon - Variable in class info.bioinfweb.treegraph.document.format.operate.IconOperator

ICON_COLOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPreviewPanel

iconComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

iconFilled - Variable in class info.bioinfweb.treegraph.document.format.IconLabelFormats

iconFilled - Variable in class info.bioinfweb.treegraph.document.format.operate.IconFilledOperator

iconFilledCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

iconFilledMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

IconFilledOperator - Class in info.bioinfweb.treegraph.document.format.operate

IconFilledOperator(boolean) - Constructor for class info.bioinfweb.treegraph.document.format.operate.IconFilledOperator

iconFormatsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewIconLabelsDialog

iconHeight - Variable in class info.bioinfweb.treegraph.document.format.IconLabelFormats

IconHeightAdapter - Class in info.bioinfweb.treegraph.document.format.adapters.distance

IconHeightAdapter(String) - Constructor for class info.bioinfweb.treegraph.document.format.adapters.distance.IconHeightAdapter

iconHeightInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

IconHeightOperator - Class in info.bioinfweb.treegraph.document.format.operate

IconHeightOperator(DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.operate.IconHeightOperator

IconLabel - Class in info.bioinfweb.treegraph.document

IconLabel(Labels) - Constructor for class info.bioinfweb.treegraph.document.IconLabel

IconLabelFormats - Class in info.bioinfweb.treegraph.document.format

IconLabelFormats(Label, boolean, int, int) - Constructor for class info.bioinfweb.treegraph.document.format.IconLabelFormats

IconLabelFormats(Label) - Constructor for class info.bioinfweb.treegraph.document.format.IconLabelFormats

IconLabelPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

IconLabelPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

This is the default constructor

iconLabelPresent - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

iconMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

IconOperator - Class in info.bioinfweb.treegraph.document.format.operate

IconOperator(String) - Constructor for class info.bioinfweb.treegraph.document.format.operate.IconOperator

iconPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

iconPreviewPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

IconPreviewPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

IconPreviewPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPreviewPanel

iconWidth - Variable in class info.bioinfweb.treegraph.document.format.IconLabelFormats

IconWidthAdapter - Class in info.bioinfweb.treegraph.document.format.adapters.distance

IconWidthAdapter(String) - Constructor for class info.bioinfweb.treegraph.document.format.adapters.distance.IconWidthAdapter

iconWidthInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

IconWidthOperator - Class in info.bioinfweb.treegraph.document.format.operate

IconWidthOperator(DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.operate.IconWidthOperator

id - Variable in class info.bioinfweb.treegraph.document.Label

id - Variable in class info.bioinfweb.treegraph.document.nodebranchdata.AbstractIDElementAdapter

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.CrossIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.EllipseIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.HexagonIcon

id() - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.labelicons.LabelIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.OctagonIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.RectangleIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.RoundRectangleIcon

ID - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.StarIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.StarIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TitedCrossIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TitedHexagonIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TriangleIcon

id() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.UnknownIcon

Returns null.

id - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.AbstractLabelAdapter

ID_PREFIX - Static variable in interface info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLConstants

idComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog

idComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewIconLabelsDialog

idComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog

IDElementAdapter - Interface in info.bioinfweb.treegraph.document.nodebranchdata

This interface should be implemented by all node data adapters that store an ID.

idExists(Node, String) - Static method in class info.bioinfweb.treegraph.document.IDManager

IDFunction - Class in info.bioinfweb.treegraph.document.undo.edit.calculatecolumn

IDFunction() - Constructor for class info.bioinfweb.treegraph.document.undo.edit.calculatecolumn.IDFunction

idIsValid(String) - Static method in class info.bioinfweb.treegraph.document.Label

idIterator() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

idLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog

idList - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog

IDManager - Class in info.bioinfweb.treegraph.document

IDManager() - Constructor for class info.bioinfweb.treegraph.document.IDManager

idNamePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

idNameTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

idPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog

idPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewIconLabelsDialog

idPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog

idPattern - Static variable in class info.bioinfweb.treegraph.document.Label

ids - Variable in class info.bioinfweb.treegraph.document.undo.format.AutoPositionLabelsEdit

ignoreWhitespaces - Variable in class info.bioinfweb.treegraph.document.undo.file.ApplyNameTableEdit

IMAGE_OPTION - Static variable in class info.bioinfweb.treegraph.cmd.CmdProcessor

ImageGenerator - Class in info.bioinfweb.treegraph.cmd

ImageGenerator() - Constructor for class info.bioinfweb.treegraph.cmd.ImageGenerator

importButtonGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

importData(NodeBranchDataAdapter[], String[][]) - Method in class info.bioinfweb.treegraph.document.undo.file.ImportTableEdit

importPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

importPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog

ImportTableAction - Class in info.bioinfweb.treegraph.gui.actions.file

ImportTableAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ImportTableAction

importTableDialog - Variable in class info.bioinfweb.treegraph.gui.actions.file.ImportTableAction

ImportTableDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io

ImportTableDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog

ImportTableEdit - Class in info.bioinfweb.treegraph.document.undo.file

ImportTableEdit(Document, String[][], NodeBranchDataAdapter[]) - Constructor for class info.bioinfweb.treegraph.document.undo.file.ImportTableEdit

includeHiddenCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

includeInternalNodeNames() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

includeLeafs - Variable in class info.bioinfweb.treegraph.document.undo.edit.CopyColumnEdit

includeLeafsCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog

incRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

increaseGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

increaseMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

increasing - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

index - Variable in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit

index - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveSubtreeEdit

index - Variable in class info.bioinfweb.treegraph.document.undo.edit.SeparateBranchEdit

INDEX_END_SYMBOL - Static variable in class info.bioinfweb.treegraph.document.io.newick.CommentDataReader

INDEX_START_SYMBOL - Static variable in class info.bioinfweb.treegraph.document.io.newick.CommentDataReader

indexOf(Label) - Method in class info.bioinfweb.treegraph.document.LabelLine

indexOf(Legend) - Method in class info.bioinfweb.treegraph.document.Legends

info.bioinfweb.treegraph - package info.bioinfweb.treegraph

All classes of the TreeGraph 2 application are contained in this package or one of its subpackeges.

info.bioinfweb.treegraph.cmd - package info.bioinfweb.treegraph.cmd

Contains classes that process the command line arguments for TreeGraph 2.

info.bioinfweb.treegraph.document - package info.bioinfweb.treegraph.document

Contains the classes that represent the data structure of TreeGraph 2 (document elements and formats) as well as all edit operations in the undo-package to manipulate the data structure and classes to read and write a document from and to different formats (io- subpackage).

info.bioinfweb.treegraph.document.clipboard - package info.bioinfweb.treegraph.document.clipboard

info.bioinfweb.treegraph.document.format - package info.bioinfweb.treegraph.document.format

Contains classes that store format information of the different document elements.

info.bioinfweb.treegraph.document.format.adapters.color - package info.bioinfweb.treegraph.document.format.adapters.color

info.bioinfweb.treegraph.document.format.adapters.distance - package info.bioinfweb.treegraph.document.format.adapters.distance

info.bioinfweb.treegraph.document.format.operate - package info.bioinfweb.treegraph.document.format.operate

Format operators are used to change single formats of document elements.

info.bioinfweb.treegraph.document.io - package info.bioinfweb.treegraph.document.io

Contains classes necessary to read and write the data structure of a TreeGraph 2 document from and to different formats.

info.bioinfweb.treegraph.document.io.newick - package info.bioinfweb.treegraph.document.io.newick

info.bioinfweb.treegraph.document.io.nexus - package info.bioinfweb.treegraph.document.io.nexus

info.bioinfweb.treegraph.document.io.phyloxml - package info.bioinfweb.treegraph.document.io.phyloxml

info.bioinfweb.treegraph.document.io.tgf - package info.bioinfweb.treegraph.document.io.tgf

info.bioinfweb.treegraph.document.io.xtg - package info.bioinfweb.treegraph.document.io.xtg

info.bioinfweb.treegraph.document.nodebranchdata - package info.bioinfweb.treegraph.document.nodebranchdata

info.bioinfweb.treegraph.document.position - package info.bioinfweb.treegraph.document.position

info.bioinfweb.treegraph.document.undo - package info.bioinfweb.treegraph.document.undo

Contains all document edits to manipulate the TreeGraph 2 data structure.

info.bioinfweb.treegraph.document.undo.edit - package info.bioinfweb.treegraph.document.undo.edit

info.bioinfweb.treegraph.document.undo.edit.calculatecolumn - package info.bioinfweb.treegraph.document.undo.edit.calculatecolumn

info.bioinfweb.treegraph.document.undo.file - package info.bioinfweb.treegraph.document.undo.file

info.bioinfweb.treegraph.document.undo.file.addsupportvalues - package info.bioinfweb.treegraph.document.undo.file.addsupportvalues

info.bioinfweb.treegraph.document.undo.format - package info.bioinfweb.treegraph.document.undo.format

info.bioinfweb.treegraph.graphics.export - package info.bioinfweb.treegraph.graphics.export

info.bioinfweb.treegraph.graphics.export.emf - package info.bioinfweb.treegraph.graphics.export.emf

info.bioinfweb.treegraph.graphics.export.jpeg - package info.bioinfweb.treegraph.graphics.export.jpeg

info.bioinfweb.treegraph.graphics.export.pdf - package info.bioinfweb.treegraph.graphics.export.pdf

info.bioinfweb.treegraph.graphics.export.png - package info.bioinfweb.treegraph.graphics.export.png

info.bioinfweb.treegraph.graphics.export.svg - package info.bioinfweb.treegraph.graphics.export.svg

info.bioinfweb.treegraph.graphics.export.tiff - package info.bioinfweb.treegraph.graphics.export.tiff

info.bioinfweb.treegraph.graphics.positionpaint - package info.bioinfweb.treegraph.graphics.positionpaint

info.bioinfweb.treegraph.graphics.positionpaint.labelicons - package info.bioinfweb.treegraph.graphics.positionpaint.labelicons

info.bioinfweb.treegraph.gui - package info.bioinfweb.treegraph.gui

Contains the TreeGraph 2 GUI.

info.bioinfweb.treegraph.gui.actions - package info.bioinfweb.treegraph.gui.actions

Contains the actions classes used in the TreeGraph 2 GUI.

info.bioinfweb.treegraph.gui.actions.edit - package info.bioinfweb.treegraph.gui.actions.edit

info.bioinfweb.treegraph.gui.actions.file - package info.bioinfweb.treegraph.gui.actions.file

info.bioinfweb.treegraph.gui.actions.format - package info.bioinfweb.treegraph.gui.actions.format

info.bioinfweb.treegraph.gui.actions.help - package info.bioinfweb.treegraph.gui.actions.help

info.bioinfweb.treegraph.gui.actions.select - package info.bioinfweb.treegraph.gui.actions.select

info.bioinfweb.treegraph.gui.actions.view - package info.bioinfweb.treegraph.gui.actions.view

info.bioinfweb.treegraph.gui.actions.window - package info.bioinfweb.treegraph.gui.actions.window

info.bioinfweb.treegraph.gui.dialogs - package info.bioinfweb.treegraph.gui.dialogs

Contains dialogs of the TreeGraph 2 GUI.

info.bioinfweb.treegraph.gui.dialogs.editelement - package info.bioinfweb.treegraph.gui.dialogs.editelement

info.bioinfweb.treegraph.gui.dialogs.elementformats - package info.bioinfweb.treegraph.gui.dialogs.elementformats

info.bioinfweb.treegraph.gui.dialogs.io - package info.bioinfweb.treegraph.gui.dialogs.io

info.bioinfweb.treegraph.gui.dialogs.io.exporttographic - package info.bioinfweb.treegraph.gui.dialogs.io.exporttographic

info.bioinfweb.treegraph.gui.dialogs.nodebranchdata - package info.bioinfweb.treegraph.gui.dialogs.nodebranchdata

info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput - package info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput

info.bioinfweb.treegraph.gui.dialogs.specialformats - package info.bioinfweb.treegraph.gui.dialogs.specialformats

info.bioinfweb.treegraph.gui.mainframe - package info.bioinfweb.treegraph.gui.mainframe

Contains all classes directly related to the main frame.

info.bioinfweb.treegraph.gui.mainframe.tools - package info.bioinfweb.treegraph.gui.mainframe.tools

info.bioinfweb.treegraph.gui.treeframe - package info.bioinfweb.treegraph.gui.treeframe

Contains all classes that make up a document window.

info.bioinfweb.treegraph.gui.treeframe.ruler - package info.bioinfweb.treegraph.gui.treeframe.ruler

inheritToTerminals - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsByNodeBranchDataEdit

inheritToTerminals - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit

inheritToTerminalsCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog

inheritToTerminalsCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog

init(boolean) - Method in class info.bioinfweb.treegraph.document.Document

init() - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats

INITIAL_CAPACITY - Static variable in class info.bioinfweb.treegraph.document.LabelLine

INITIAL_CAPACITY - Static variable in class info.bioinfweb.treegraph.document.Labels

initialFile - Variable in class info.bioinfweb.treegraph.cmd.CmdProcessor

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewIconLabelsDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog

This method initializes this dialog

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconLabelPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.NodeMarginPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.JPEGPrefPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TIFFPrefPanel

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TransparenrtBgPrefPanel

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ScaleDistanceValuesDialog

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup

This method initializes this

initialize() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

This method initializes this

initLabel(String, JPanel, int) - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput

initLabelFormats() - Method in class info.bioinfweb.treegraph.document.io.tgf.TGFReader

initSets() - Method in class info.bioinfweb.treegraph.document.Document

input - Variable in class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup

inputListeners - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NewNodeBranchDataInput

inputPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog

inputs - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog

inScaleUnits - Variable in class info.bioinfweb.treegraph.document.format.ScaleValue

insert(Label) - Method in class info.bioinfweb.treegraph.document.LabelLine

insert(Legend) - Method in class info.bioinfweb.treegraph.document.Legends

Inserts the specified legend to the list and calls l.setLegends(this).

insert() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLabelEdit

insert() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLegendEdit

insert() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveSubtreeEdit

insertGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

InsertLabelEdit - Class in info.bioinfweb.treegraph.document.undo.edit

InsertLabelEdit(Document, Label, Labels) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.InsertLabelEdit

InsertLabelsEdit - Class in info.bioinfweb.treegraph.document.undo.edit

Used to insert multiple icon labels.

InsertLabelsEdit(Document, Label, Branch[]) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.InsertLabelsEdit

InsertLegendEdit - Class in info.bioinfweb.treegraph.document.undo.edit

InsertLegendEdit(Document, Legend, Node, Node) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.InsertLegendEdit

InsertRemoveLabelEdit - Class in info.bioinfweb.treegraph.document.undo.edit

InsertRemoveLabelEdit(Document, Label, Labels) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLabelEdit

InsertRemoveLegendEdit - Class in info.bioinfweb.treegraph.document.undo.edit

InsertRemoveLegendEdit(Document, Legend, Node, Node) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLegendEdit

InsertRemoveSubtreeEdit - Class in info.bioinfweb.treegraph.document.undo.edit

InsertRemoveSubtreeEdit(Document, Node, Node, int) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveSubtreeEdit

InsertSiblingEdit - Class in info.bioinfweb.treegraph.document.undo.edit

This edit is executed if a branch is selected and a new node should be inserted.

InsertSiblingEdit(Document, Node, Node) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.InsertSiblingEdit

insertSubtree(Document, Node, Node) - Static method in class info.bioinfweb.treegraph.gui.actions.edit.NewNodeAction

Inserts a new subelement as the last subelement of the given parent.

insertSubtree(Document, Node, Node, int) - Static method in class info.bioinfweb.treegraph.gui.actions.edit.NewNodeAction

Inserts a new subelement at the given position.

InsertSubtreeEdit - Class in info.bioinfweb.treegraph.document.undo.edit

InsertSubtreeEdit(Document, Node, Node, int) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.InsertSubtreeEdit

inSubtreeOf(LeafField, boolean) - Method in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.LeafField

Returns false if this field (or its complement) contains any terminal the specified field does not contain and this field (or its complement) contains at least one terminal less than the specified field.

internalAdapter - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

internalFrameListener - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame

internalInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

internalLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

internalNodesPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

internalsAreDecimal(Node, NodeBranchDataAdapter) - Static method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit

Tests if all internal nodes in the subtree under root contain decimal values.

InternalsRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog

IntervalDialog - Class in info.bioinfweb.treegraph.gui.dialogs.nodebranchdata

IntervalDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog

intervalPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel

intervalPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog

InvalidFormatException - Exception in info.bioinfweb.treegraph.document.undo.edit

This exception is throw if a name table file does not have two entries seperated by the specified String in a line.

InvalidFormatException() - Constructor for exception info.bioinfweb.treegraph.document.undo.edit.InvalidFormatException

InvalidFormatException(String, Throwable) - Constructor for exception info.bioinfweb.treegraph.document.undo.edit.InvalidFormatException

InvalidFormatException(String) - Constructor for exception info.bioinfweb.treegraph.document.undo.edit.InvalidFormatException

InvalidFormatException(Throwable) - Constructor for exception info.bioinfweb.treegraph.document.undo.edit.InvalidFormatException

InvalidTargetException - Exception in info.bioinfweb.treegraph.document.format.operate

InvalidTargetException() - Constructor for exception info.bioinfweb.treegraph.document.format.operate.InvalidTargetException

InvalidTargetException(String, Throwable) - Constructor for exception info.bioinfweb.treegraph.document.format.operate.InvalidTargetException

InvalidTargetException(String) - Constructor for exception info.bioinfweb.treegraph.document.format.operate.InvalidTargetException

InvalidTargetException(Throwable) - Constructor for exception info.bioinfweb.treegraph.document.format.operate.InvalidTargetException

InvertSelectionAction - Class in info.bioinfweb.treegraph.gui.actions.select

InvertSelectionAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.select.InvertSelectionAction

IS_MAC - Static variable in class info.bioinfweb.treegraph.Main

isAbove() - Method in class info.bioinfweb.treegraph.document.format.LabelFormats

isAbove() - Method in class info.bioinfweb.treegraph.document.Label

Tests if this label is located in the upper label block.

isCellEditable(int, int) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel

isCharAfterLength(char) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

isChild(int) - Method in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.LeafField

isChildOf(Node) - Method in class info.bioinfweb.treegraph.document.Node

Tests if the specified node is an ancestor of this node.

isConstantWidth() - Method in class info.bioinfweb.treegraph.document.format.BranchFormats

isDecimal(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter

isDecimal(Node) - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter

isDecimal(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter

isDecimal(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter

isDecimal() - Method in class info.bioinfweb.treegraph.document.TextElementData

Return whether this object contains a decimal value.

isEmpty() - Method in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard

isEmpty() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap

isEmpty() - Method in class info.bioinfweb.treegraph.document.Labels

Tests if any labels are present

isEmpty() - Method in class info.bioinfweb.treegraph.document.Legends

isEmpty(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter

isEmpty(Node) - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter

isEmpty(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter

isEmpty(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter

isEmpty() - Method in class info.bioinfweb.treegraph.document.TextElementData

Return whether this object is empty.

isEmpty() - Method in class info.bioinfweb.treegraph.document.Tree

Tests if there are tree elements present.

isEmpty() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel

isEmpty() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection

isEvaluating - Variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit

isEvaluatingDecimal - Variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit

isFirst() - Method in class info.bioinfweb.treegraph.document.Node

isFreeName(String) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringWriter

isFreeNameChar(char) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

isFreeNameFirstChar(char) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

isIncreasing() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

isInScaleUnits() - Method in class info.bioinfweb.treegraph.document.format.ScaleValue

isLadderizeDown() - Method in class info.bioinfweb.treegraph.document.NodeLadderizeComparable

isLast() - Method in class info.bioinfweb.treegraph.document.Node

isLeaf() - Method in class info.bioinfweb.treegraph.document.Node

Tests if this Node is at the deepest level of the tree (has no subnodes).

isNewColumn() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.AbstractIDElementAdapter

isNewColumn() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter

isNewColumn() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NewHiddenBranchDataAdapter

isNewColumn() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NewHiddenNodeDataAdapter

isNewColumn() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NewTextLabelAdapter

isNewColumn() - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter

isNewColumn() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter

isNewColumn() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter

isOnlySubelement() - Method in class info.bioinfweb.treegraph.document.Node

Tests if this element is the only Node under the parent node.

isPainter(TreePainter) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramFactory

isPainter(TreePainter) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramFactory

isPainter(TreePainter) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.SinglePositionPaintFactory

isPositioner(TreePositioner) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramFactory

isPositioner(TreePositioner) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramFactory

isPositioner(TreePositioner) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.SinglePositionPaintFactory

isSet - Variable in class info.bioinfweb.treegraph.document.format.operate.TextStyleOperator

isSignificant() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit

isStartLeft() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats

isString(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter

isString(Node) - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter

isString(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter

isString(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter

isString() - Method in class info.bioinfweb.treegraph.document.TextElementData

Return whether this object contains a string value.

ITALIC - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats

italicCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

italicMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

items - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelIconComboBoxModel