info.bioinfweb.treegraph.document
Class IDManager

java.lang.Object
  info.bioinfweb.treegraph.document.IDManager

public class IDManager
extends java.lang.Object

Field Summary

static java.lang.String	RAND_CHARS
static int	RAND_LENGTH
private static java.util.Comparator<java.lang.String>	STRING_COMPARATOR

Constructor Summary

IDManager()

Method Summary

static boolean	containsIDElements(Node root) Test whether the subtree under root contains at least one ID element (label or hidden data)
static IconLabel	getFirstIconLabel(Node root, java.lang.String id)
static Label	getFirstLabel(Node root, java.lang.String id)
static TextLabel	getFirstTextLabel(Node root, java.lang.String id)
static java.lang.String[]	getHiddenBranchDataIDs(Node root) Searches for all the IDs of hidden data that is assigned to a branch present in the subtree under root.
static java.util.Vector<java.lang.String>	getHiddenBranchDataIDVector(Node root)
static java.lang.String[]	getHiddenNodeDataIDs(Node root) Searches for all the IDs of hidden data that is assigned to a node present in the subtree under root.
static java.util.Vector<java.lang.String>	getHiddenNodeDataIDVector(Node root)
static java.util.Vector<java.lang.String>	getIconLabelIDVector(Node root)
static java.lang.String[]	getIDs(Node root) Searches for all IDs (hidden data and label IDs) present in the subtree under root.
static java.util.Vector<java.lang.String>	getIDVector(Node root) Searches for all IDs present in the subtree under root.
static java.lang.String[]	getLabelIDs(Node root) Searches for all label IDs present in the subtree under root.
static java.util.Vector<java.lang.String>	getLabelIDVector(Node root)
static java.lang.String[]	getTextLabelIDs(Node root)
static java.util.Vector<java.lang.String>	getTextLabelIDVector(Node root)
private static java.util.Vector<java.lang.String>	getVector(Node root, boolean includeTextLabels, boolean includeIconLabels, boolean includeNodeHiddenData, boolean includeBranchHiddenData) Returns a vector of IDs which is sorted alphabetically.
static boolean	idExists(Node root, java.lang.String id)
static java.lang.String	newID(java.util.Vector<java.lang.String> ids)
private static void	renameHiddenDataID(HiddenDataElement element, java.lang.String oldName, java.lang.String newName)
static void	renameID(java.lang.String oldName, java.lang.String newName, Node root) Changes all accurences of the given ID in the subtree under root.
private static void	renameLabelIDInLabelBlock(java.lang.String oldName, java.lang.String newName, Labels labels, boolean above)
private static void	searchHiddenDataIDs(HiddenDataElement element, java.util.Vector<java.lang.String> list)
private static void	searchIDsInSubtree(Node root, java.util.Vector<java.lang.String> list, boolean includeTextLabels, boolean includeIconLabels, boolean includeNodeHiddenData, boolean includeBranchHiddenData)
private static void	searchLabelIDsInLabelBlock(Labels labels, boolean above, boolean includeTextLabels, boolean includeIconLabels, java.util.Vector<java.lang.String> list) Adds all label IDs to the specified list.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

RAND_CHARS

public static final java.lang.String RAND_CHARS

See Also:

Constant Field Values

RAND_LENGTH

public static final int RAND_LENGTH

See Also:

Constant Field Values

STRING_COMPARATOR

private static final java.util.Comparator<java.lang.String> STRING_COMPARATOR

Constructor Detail

IDManager

public IDManager()

Method Detail

searchLabelIDsInLabelBlock

private static void searchLabelIDsInLabelBlock(Labels labels,
                                               boolean above,
                                               boolean includeTextLabels,
                                               boolean includeIconLabels,
                                               java.util.Vector<java.lang.String> list)

Adds all label IDs to the specified list. If one ID is present several times, it is only added once. Empty IDs ("") are not added.

Parameters:

labels -

above -

list -

searchHiddenDataIDs

private static void searchHiddenDataIDs(HiddenDataElement element,
                                        java.util.Vector<java.lang.String> list)

searchIDsInSubtree

private static void searchIDsInSubtree(Node root,
                                       java.util.Vector<java.lang.String> list,
                                       boolean includeTextLabels,
                                       boolean includeIconLabels,
                                       boolean includeNodeHiddenData,
                                       boolean includeBranchHiddenData)

getIDs

public static java.lang.String[] getIDs(Node root)

Searches for all IDs (hidden data and label IDs) present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

containsIDElements

public static boolean containsIDElements(Node root)

Test whether the subtree under root contains at least one ID element (label or hidden data)

Parameters:

root -

Returns:

true if an ID element was found

getLabelIDs

public static java.lang.String[] getLabelIDs(Node root)

Searches for all label IDs present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getTextLabelIDs

public static java.lang.String[] getTextLabelIDs(Node root)

getHiddenBranchDataIDs

public static java.lang.String[] getHiddenBranchDataIDs(Node root)

Searches for all the IDs of hidden data that is assigned to a branch present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getHiddenNodeDataIDs

public static java.lang.String[] getHiddenNodeDataIDs(Node root)

Searches for all the IDs of hidden data that is assigned to a node present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getVector

private static java.util.Vector<java.lang.String> getVector(Node root,
                                                            boolean includeTextLabels,
                                                            boolean includeIconLabels,
                                                            boolean includeNodeHiddenData,
                                                            boolean includeBranchHiddenData)

Returns a vector of IDs which is sorted alphabetically.

Parameters:

root -

includeLabels -

includeNodeHiddenData -

includeBranchHiddenData -

Returns:

getIDVector

public static java.util.Vector<java.lang.String> getIDVector(Node root)

Searches for all IDs present in the subtree under root.

Parameters:

root - - the root node of the subtree to be searched.

Returns:

a list of all IDs (every string is contained only once)

getLabelIDVector

public static java.util.Vector<java.lang.String> getLabelIDVector(Node root)

getTextLabelIDVector

public static java.util.Vector<java.lang.String> getTextLabelIDVector(Node root)

getIconLabelIDVector

public static java.util.Vector<java.lang.String> getIconLabelIDVector(Node root)

getHiddenBranchDataIDVector

public static java.util.Vector<java.lang.String> getHiddenBranchDataIDVector(Node root)

getHiddenNodeDataIDVector

public static java.util.Vector<java.lang.String> getHiddenNodeDataIDVector(Node root)

renameLabelIDInLabelBlock

private static void renameLabelIDInLabelBlock(java.lang.String oldName,
                                              java.lang.String newName,
                                              Labels labels,
                                              boolean above)

renameHiddenDataID

private static void renameHiddenDataID(HiddenDataElement element,
                                       java.lang.String oldName,
                                       java.lang.String newName)

renameID

public static void renameID(java.lang.String oldName,
                            java.lang.String newName,
                            Node root)

Changes all accurences of the given ID in the subtree under root.

Parameters:

root - - the root node of the subtree where the renaming should take place

newID

public static java.lang.String newID(java.util.Vector<java.lang.String> ids)

getFirstLabel

public static Label getFirstLabel(Node root,
                                  java.lang.String id)

getFirstTextLabel

public static TextLabel getFirstTextLabel(Node root,
                                          java.lang.String id)

getFirstIconLabel

public static IconLabel getFirstIconLabel(Node root,
                                          java.lang.String id)

idExists

public static boolean idExists(Node root,
                               java.lang.String id)