info.bioinfweb.treegraph.document.io
Interface DocumentReader

All Known Implementing Classes:

AbstractDocumentReader, NewickReader, NexusReader, PhyloXMLReader, TextStreamReader, TGFReader, XTGReader

public interface DocumentReader

Method Summary

Document	read(java.io.File file)
Document	read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
Document	read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)
Document	read(java.io.InputStream stream)
Document	read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
Document	read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)

Method Detail

read

Document read(java.io.InputStream stream)
              throws java.lang.Exception

Throws:

java.lang.Exception

read

Document read(java.io.File file)
              throws java.lang.Exception

Throws:

java.lang.Exception

read

Document read(java.io.InputStream stream,
              NodeBranchDataAdapter internalAdapter,
              NodeBranchDataAdapter branchLengthsAdapter)
              throws java.lang.Exception

Throws:

java.lang.Exception

read

Document read(java.io.File file,
              NodeBranchDataAdapter internalAdapter,
              NodeBranchDataAdapter branchLengthsAdapter)
              throws java.lang.Exception

Throws:

java.lang.Exception

read

Document read(java.io.InputStream stream,
              NodeBranchDataAdapter internalAdapter,
              NodeBranchDataAdapter branchLengthsAdapter,
              TreeSelector selector,
              boolean translateInternalNodes)
              throws java.lang.Exception

Throws:

java.lang.Exception

read

Document read(java.io.File file,
              NodeBranchDataAdapter internalAdapter,
              NodeBranchDataAdapter branchLengthsAdapter,
              TreeSelector selector,
              boolean translateInternalNodes)
              throws java.lang.Exception

Throws:

java.lang.Exception