Uses of Class
info.bioinfweb.treegraph.document.io.newick.NewickException

Packages that use NewickException

info.bioinfweb.treegraph.document.io.newick

Uses of NewickException in info.bioinfweb.treegraph.document.io.newick

Methods in info.bioinfweb.treegraph.document.io.newick that return NewickException

static NewickException	NewickException.getUnterminatedCommentException(int start)
static NewickException	NewickException.getUnterminatedNameException(int start)

Methods in info.bioinfweb.treegraph.document.io.newick that throw NewickException

Tree	NewickStringReader.read(java.lang.String newick)
static Tree[]	NewickStringReader.read(java.lang.String[] newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TranslTable translTable, boolean translateInternals)
Tree	NewickStringReader.read(java.lang.String newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
Tree	NewickStringReader.read(java.lang.String newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TranslTable translTable, boolean translateInternals)
private Node	NewickStringReader.readBranch(int start, int end, Node root)
private void	NewickStringReader.readBranchList(int start, int end, Node root)
private Node	NewickStringReader.readInternal(int start, int end)
private Node	NewickStringReader.readLeaf(int start, int end)
private void	NewickStringReader.readName(int previousEnd, int end, Node root, NodeBranchDataAdapter adapter, TranslTable translTable)
private Node	NewickStringReader.readSubtree(int start, int end)
private Tree	NewickStringReader.readTree()