info.bioinfweb.treegraph.document.io.phyloxml
Interface PhyloXMLConstants

All Known Implementing Classes:

PhyloXMLFilter, PhyloXMLReader

public interface PhyloXMLConstants

Provides XML constants for the phyloXML format.

Since:

2.0.35

Author:

Ben Stöver

Field Summary

static javax.xml.namespace.QName	ATTR_BRANCH_LENGTH
static javax.xml.namespace.QName	ATTR_BRANCH_LENGTH_UNIT
static javax.xml.namespace.QName	ATTR_ROOTED
static javax.xml.namespace.QName	ATTR_TYPE
static java.lang.String	BRANCH_WIDT_DATA_NAME
static java.lang.String	DEFAULT_CONFIDENCE_NAME
static java.lang.String	DEFAULT_TREE_NAME
static java.lang.String	ID_PREFIX
static java.lang.String	NAMESPACE_URI
static javax.xml.namespace.QName	TAG_ACCESSION
static javax.xml.namespace.QName	TAG_AUTHORITY
static javax.xml.namespace.QName	TAG_BRANCH_LENGTH
static javax.xml.namespace.QName	TAG_CLADE
static javax.xml.namespace.QName	TAG_CODE
static javax.xml.namespace.QName	TAG_COLOR_BLUE
static javax.xml.namespace.QName	TAG_COLOR_GREEN
static javax.xml.namespace.QName	TAG_COLOR_RED
static javax.xml.namespace.QName	TAG_COMMON_NAME
static javax.xml.namespace.QName	TAG_CONFIDENCE
static javax.xml.namespace.QName	TAG_DATE
static javax.xml.namespace.QName	TAG_DESCRIPTION
static javax.xml.namespace.QName	TAG_DISTRIBUTION
static javax.xml.namespace.QName	TAG_LINE_COLOR
static javax.xml.namespace.QName	TAG_LINE_WIDTH
static javax.xml.namespace.QName	TAG_LOCATION
static javax.xml.namespace.QName	TAG_MAX
static javax.xml.namespace.QName	TAG_MIN
static javax.xml.namespace.QName	TAG_NAME
static javax.xml.namespace.QName	TAG_PHYLOGENY
static javax.xml.namespace.QName	TAG_RANK
static javax.xml.namespace.QName	TAG_ROOT
static javax.xml.namespace.QName	TAG_SCIENTIFIC_NAME
static javax.xml.namespace.QName	TAG_SEQUENCE
static javax.xml.namespace.QName	TAG_SYMBOL
static javax.xml.namespace.QName	TAG_SYNONYM
static javax.xml.namespace.QName	TAG_TAXONOMY
static javax.xml.namespace.QName	TAG_VALUE

Field Detail

ID_PREFIX

static final java.lang.String ID_PREFIX

See Also:

Constant Field Values

DEFAULT_CONFIDENCE_NAME

static final java.lang.String DEFAULT_CONFIDENCE_NAME

See Also:

Constant Field Values

DEFAULT_TREE_NAME

static final java.lang.String DEFAULT_TREE_NAME

See Also:

Constant Field Values

BRANCH_WIDT_DATA_NAME

static final java.lang.String BRANCH_WIDT_DATA_NAME

See Also:

Constant Field Values

NAMESPACE_URI

static final java.lang.String NAMESPACE_URI

See Also:

Constant Field Values

TAG_ROOT

static final javax.xml.namespace.QName TAG_ROOT

TAG_PHYLOGENY

static final javax.xml.namespace.QName TAG_PHYLOGENY

ATTR_ROOTED

static final javax.xml.namespace.QName ATTR_ROOTED

ATTR_BRANCH_LENGTH_UNIT

static final javax.xml.namespace.QName ATTR_BRANCH_LENGTH_UNIT

TAG_CLADE

static final javax.xml.namespace.QName TAG_CLADE

ATTR_BRANCH_LENGTH

static final javax.xml.namespace.QName ATTR_BRANCH_LENGTH

TAG_NAME

static final javax.xml.namespace.QName TAG_NAME

TAG_BRANCH_LENGTH

static final javax.xml.namespace.QName TAG_BRANCH_LENGTH

TAG_LINE_WIDTH

static final javax.xml.namespace.QName TAG_LINE_WIDTH

TAG_CONFIDENCE

static final javax.xml.namespace.QName TAG_CONFIDENCE

ATTR_TYPE

static final javax.xml.namespace.QName ATTR_TYPE

TAG_LINE_COLOR

static final javax.xml.namespace.QName TAG_LINE_COLOR

TAG_COLOR_RED

static final javax.xml.namespace.QName TAG_COLOR_RED

TAG_COLOR_GREEN

static final javax.xml.namespace.QName TAG_COLOR_GREEN

TAG_COLOR_BLUE

static final javax.xml.namespace.QName TAG_COLOR_BLUE

TAG_TAXONOMY

static final javax.xml.namespace.QName TAG_TAXONOMY

TAG_CODE

static final javax.xml.namespace.QName TAG_CODE

TAG_SCIENTIFIC_NAME

static final javax.xml.namespace.QName TAG_SCIENTIFIC_NAME

TAG_AUTHORITY

static final javax.xml.namespace.QName TAG_AUTHORITY

TAG_COMMON_NAME

static final javax.xml.namespace.QName TAG_COMMON_NAME

TAG_SYNONYM

static final javax.xml.namespace.QName TAG_SYNONYM

TAG_RANK

static final javax.xml.namespace.QName TAG_RANK

TAG_SEQUENCE

static final javax.xml.namespace.QName TAG_SEQUENCE

TAG_SYMBOL

static final javax.xml.namespace.QName TAG_SYMBOL

TAG_ACCESSION

static final javax.xml.namespace.QName TAG_ACCESSION

TAG_LOCATION

static final javax.xml.namespace.QName TAG_LOCATION

TAG_DISTRIBUTION

static final javax.xml.namespace.QName TAG_DISTRIBUTION

TAG_DESCRIPTION

static final javax.xml.namespace.QName TAG_DESCRIPTION

TAG_DATE

static final javax.xml.namespace.QName TAG_DATE

TAG_VALUE

static final javax.xml.namespace.QName TAG_VALUE

TAG_MIN

static final javax.xml.namespace.QName TAG_MIN

TAG_MAX

static final javax.xml.namespace.QName TAG_MAX