Uses of Interface
info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter

Packages that use NodeBranchDataAdapter

info.bioinfweb.treegraph.document	Contains the classes that represent the data structure of TreeGraph 2 (document elements and formats) as well as all edit operations in the undo-package to manipulate the data structure and classes to read and write a document from and to different formats (io- subpackage).
info.bioinfweb.treegraph.document.io	Contains classes necessary to read and write the data structure of a TreeGraph 2 document from and to different formats.
info.bioinfweb.treegraph.document.io.newick
info.bioinfweb.treegraph.document.io.nexus
info.bioinfweb.treegraph.document.io.phyloxml
info.bioinfweb.treegraph.document.io.tgf
info.bioinfweb.treegraph.document.io.xtg
info.bioinfweb.treegraph.document.nodebranchdata
info.bioinfweb.treegraph.document.undo	Contains all document edits to manipulate the TreeGraph 2 data structure.
info.bioinfweb.treegraph.document.undo.edit
info.bioinfweb.treegraph.document.undo.edit.calculatecolumn
info.bioinfweb.treegraph.document.undo.file
info.bioinfweb.treegraph.document.undo.format
info.bioinfweb.treegraph.gui.actions	Contains the actions classes used in the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.actions.edit
info.bioinfweb.treegraph.gui.actions.file
info.bioinfweb.treegraph.gui.actions.format
info.bioinfweb.treegraph.gui.actions.select
info.bioinfweb.treegraph.gui.actions.view
info.bioinfweb.treegraph.gui.actions.window
info.bioinfweb.treegraph.gui.dialogs	Contains dialogs of the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.dialogs.io
info.bioinfweb.treegraph.gui.dialogs.io.exporttographic
info.bioinfweb.treegraph.gui.dialogs.nodebranchdata
info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput
info.bioinfweb.treegraph.gui.treeframe	Contains all classes that make up a document window.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document

Methods in info.bioinfweb.treegraph.document with parameters of type NodeBranchDataAdapter

boolean	Tree.containsDecimal(NodeBranchDataAdapter adapter) Tests if the tree contains a node which would be able to return a decimal value to the given adapter.
static boolean	Tree.containsDecimal(NodeBranchDataAdapter adapter, Node root) Tests if the subtree unter root contains a node which would be able to return a decimal value to the given adapter.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io

Methods in info.bioinfweb.treegraph.document.io with parameters of type NodeBranchDataAdapter

Document	DocumentReader.read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
Document	AbstractDocumentReader.read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
Document	DocumentReader.read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)
Document	AbstractDocumentReader.read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes) If you want to implement file specific functionalities you should override this method.
Document	DocumentReader.read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
Document	AbstractDocumentReader.read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
Document	DocumentReader.read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)
void	DocumentWriter.write(Document document, java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)
void	AbstractDocumentWriter.write(Document document, java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)
void	DocumentWriter.write(Document document, java.io.OutputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.newick

Fields in info.bioinfweb.treegraph.document.io.newick declared as NodeBranchDataAdapter

private NodeBranchDataAdapter	NewickStringReader.branchLengthsAdapter
private NodeBranchDataAdapter	NewickStringReader.internalAdapter

Methods in info.bioinfweb.treegraph.document.io.newick with parameters of type NodeBranchDataAdapter

private static java.lang.String	NewickStringWriter.formatName(Node node, NodeBranchDataAdapter adapter)
Document	NewickReader.read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternals)
Document	NewickReader.read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternals)
static Tree[]	NewickStringReader.read(java.lang.String[] newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TranslTable translTable, boolean translateInternals)
Tree	NewickStringReader.read(java.lang.String newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
Tree	NewickStringReader.read(java.lang.String newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TranslTable translTable, boolean translateInternals)
private void	NewickStringReader.readName(int previousEnd, int end, Node root, NodeBranchDataAdapter adapter, TranslTable translTable)
void	NewickWriter.write(Document document, java.io.OutputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)
static java.lang.String	NewickStringWriter.write(Tree tree, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)
private static java.lang.String	NewickStringWriter.writeSubtree(Node root, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.nexus

Methods in info.bioinfweb.treegraph.document.io.nexus with parameters of type NodeBranchDataAdapter

Tree[]	NexusDocument.createTrees(NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, boolean translateInternals) Creates a Tree object from each stored Newick string.
Document	NexusReader.read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthAdapter, TreeSelector selector, boolean translateInternalNodes)
Document	NexusReader.read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthAdapter, TreeSelector selector, boolean translateInternalNodes)
void	NexusWriter.write(Document document, java.io.OutputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.phyloxml

Methods in info.bioinfweb.treegraph.document.io.phyloxml with parameters of type NodeBranchDataAdapter

Document

PhyloXMLReader.read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.tgf

Methods in info.bioinfweb.treegraph.document.io.tgf with parameters of type NodeBranchDataAdapter

Document

TGFReader.read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.xtg

Methods in info.bioinfweb.treegraph.document.io.xtg with parameters of type NodeBranchDataAdapter

Document	XTGReader.read(java.io.File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)
Document	XTGReader.read(java.io.InputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)
void	XTGWriter.write(Document document, java.io.OutputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter) A call of this method is identical with calling XTGWriter.write(info.bioinfweb.treegraph.document.Document, java.io.OutputStream) becuase the tgx format supports writing any number of labels by default and there is no need to replace internal node names by label values.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.nodebranchdata

Classes in info.bioinfweb.treegraph.document.nodebranchdata that implement NodeBranchDataAdapter

class	AbstractIDElementAdapter Node data adapters that need to store an ID can be inherited from this abstract class.
class	AbstractNodeBranchDataAdapter Implements a basic equals()-method for all node/branch data adapters.
class	BranchLengthAdapter
class	HiddenBranchDataAdapter
class	HiddenDataAdapter
class	HiddenNodeDataAdapter
class	NewHiddenBranchDataAdapter Creates a new hidden branch data column.
class	NewHiddenNodeDataAdapter Creates a new hidden node data column.
class	NewTextLabelAdapter Creates a new group of labels.
class	NodeNameAdapter
class	TextElementDataAdapter This abstract class implements basic funktionalities for adapters that deal with data stored in a TextElementData-object.
class	TextLabelAdapter
class	UniqueNameAdapter

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo

Fields in info.bioinfweb.treegraph.document.undo declared as NodeBranchDataAdapter

protected NodeBranchDataAdapter	NodeBranchDataEdit.adapter
private NodeBranchDataAdapter	NodeBranchDataBackup.adapter

Constructors in info.bioinfweb.treegraph.document.undo with parameters of type NodeBranchDataAdapter

NodeBranchDataBackup(NodeBranchDataAdapter adapter, Node root)

NodeBranchDataEdit(Document document, NodeBranchDataAdapter adapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.edit

Fields in info.bioinfweb.treegraph.document.undo.edit declared as NodeBranchDataAdapter

private NodeBranchDataAdapter	RescaleNodeDataEdit.adapter
private NodeBranchDataAdapter	ReplaceInNodeDataEdit.adapter
private NodeBranchDataAdapter	CopyColumnEdit.source

Fields in info.bioinfweb.treegraph.document.undo.edit with type parameters of type NodeBranchDataAdapter

private java.util.Map<java.lang.String,NodeBranchDataAdapter>

CalculateColumnEdit.adapterMap

Methods in info.bioinfweb.treegraph.document.undo.edit that return types with arguments of type NodeBranchDataAdapter

private java.util.HashMap<java.lang.String,NodeBranchDataAdapter>

CalculateColumnEdit.createAdapterMap()

Methods in info.bioinfweb.treegraph.document.undo.edit with parameters of type NodeBranchDataAdapter

static void	DeleteColumnEdit.deleteSubtree(Node root, NodeBranchDataAdapter adapter)
private java.lang.Object	CalculateColumnEdit.getCurrentValue(NodeBranchDataAdapter adapter) Returns the value of the specified column in the current line (specified by CalculateColumnEdit.position).

Constructors in info.bioinfweb.treegraph.document.undo.edit with parameters of type NodeBranchDataAdapter

CalculateColumnEdit(Document document, NodeBranchDataAdapter targetAdapter, java.lang.String expression)

CopyColumnEdit(Document document, NodeBranchDataAdapter source, NodeBranchDataAdapter dest, boolean includeLeafs)

DeleteColumnEdit(Document document, NodeBranchDataAdapter adapter)

DeleteOutsideIntervalEdit(Document document, NodeBranchDataAdapter adapter, double lowerBorder, double upperBorder)

ReplaceInNodeDataEdit(Document document, NodeBranchDataAdapter adapter, ReplaceInNodeDataEdit.InsertPosition position, java.lang.String oldText, java.lang.String newText, boolean caseSensitive, boolean wordsOnly)

RescaleNodeDataEdit(Document document, NodeBranchDataAdapter adapter, double factor, double addend)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.edit.calculatecolumn

Methods in info.bioinfweb.treegraph.document.undo.edit.calculatecolumn with parameters of type NodeBranchDataAdapter

abstract java.lang.Object

IDFunction.getValue(NodeBranchDataAdapter id)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.file

Fields in info.bioinfweb.treegraph.document.undo.file declared as NodeBranchDataAdapter

private NodeBranchDataAdapter	ApplyNameTableEdit.adapter
private NodeBranchDataAdapter[]	ImportTableEdit.adapters
private NodeBranchDataAdapter	AddSupportValuesEdit.sourceAdapter The node/branch data to be imported (node names or branch lengths)

Methods in info.bioinfweb.treegraph.document.undo.file with parameters of type NodeBranchDataAdapter

boolean	ImportTableEdit.importData(NodeBranchDataAdapter[] adapters, java.lang.String[][] data)
private static boolean	AddSupportValuesEdit.internalsAreDecimal(Node root, NodeBranchDataAdapter adapter) Tests if all internal nodes in the subtree under root contain decimal values.

Constructors in info.bioinfweb.treegraph.document.undo.file with parameters of type NodeBranchDataAdapter

AddSupportValuesEdit(Document document, Document src, TextElementDataAdapter terminalsAdapter, AddSupportValuesEdit.TargetType targetType, java.lang.String idPrefix, NodeBranchDataAdapter sourceAdapter, boolean processRooted)

ApplyNameTableEdit(Document document, NodeBranchDataAdapter adapter, java.util.List<java.lang.String> oldNames, java.util.List<java.lang.String> newNames, boolean ignoreWhitespaces, boolean caseSensitive, boolean parseNumericValues)

ImportTableEdit(Document document, java.lang.String[][] data, NodeBranchDataAdapter[] adapters)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.format

Fields in info.bioinfweb.treegraph.document.undo.format declared as NodeBranchDataAdapter

private NodeBranchDataAdapter	DistanceValuesByNodeBranchDataEdit.sourceAdapter
private NodeBranchDataAdapter	ColorsByNodeBranchDataEdit.sourceAdapter

Methods in info.bioinfweb.treegraph.document.undo.format with parameters of type NodeBranchDataAdapter

static double

NodeBranchDataFormatEdit.calculateMaxNodeData(NodeBranchDataAdapter adapter, Node root) Searches for the maximal node data specified by adapter in the subtree under root.

Constructors in info.bioinfweb.treegraph.document.undo.format with parameters of type NodeBranchDataAdapter

ColorsByNodeBranchDataEdit(Document document, NodeBranchDataAdapter sourceAdapter, java.awt.Color min, java.awt.Color max, boolean changeUndefined, boolean inheritToTerminals, ColorAdapter[] targetAdapters)

DistanceValuesByNodeBranchDataEdit(Document document, NodeBranchDataAdapter sourceAdapter, float min, float max, boolean changeUndefined, boolean inheritToTerminals, DistanceAdapter[] targetAdapters)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions

Methods in info.bioinfweb.treegraph.gui.actions with parameters of type NodeBranchDataAdapter

private void	ActionManagement.setActionStatusBySelection(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
abstract void	DocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.edit

Methods in info.bioinfweb.treegraph.gui.actions.edit with parameters of type NodeBranchDataAdapter

void	UndoRedoToAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	UndoAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SetColumnTypeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SeparateBranchAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SearchTextAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	RerootAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ReplaceInNodeDataAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	RenameDataIDAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	RedoAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	PasteAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	NewTextLabelAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	NewNodeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	NewLegendAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	NewIconLabelsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	MoveSubtreeUpAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	MoveSubtreeDownAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	LadderizeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	EditTextElementAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	EditBranchLengthAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	DeleteSubelementsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	DeleteOutsideIntervalAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	DeleteElementAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	DeleteColumnAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	CopyElementAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	CopyColumnAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	CopyAllLabelsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	CollapseNodeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ChangeLabelIDAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	CalculateColumnAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.file

Methods in info.bioinfweb.treegraph.gui.actions.file with parameters of type NodeBranchDataAdapter

void	SaveAsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SaveAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	OpenAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	NewDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ImportTableAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ExportToPDFAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ExportToNewickNexusAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ExportToGraphicAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ExportTableAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ExitAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	CloseAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ApplyNameTableAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	AddSupportValuesAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.format

Methods in info.bioinfweb.treegraph.gui.actions.format with parameters of type NodeBranchDataAdapter

void	ShowRootedAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ShowHideScaleBarAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ScaleDistanceValuesAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ScaleBranchLengthsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ReanchorLegendAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	EditGlobalFormatsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	EditElementFormatsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	DistanceValuesByNodeBranchDataAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ColorsByNodeBranchDataAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	AutoPositionLabelsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.select

Methods in info.bioinfweb.treegraph.gui.actions.select with parameters of type NodeBranchDataAdapter

void	SelectTypeInSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectTypeInDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectLegendsWithPosIndexAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectLegendsInSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectLegendsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectLeafsInSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectLeafsInDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectLabelsWithIDAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectLabelsInSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	SelectAllAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	InvertSelectionAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.view

Methods in info.bioinfweb.treegraph.gui.actions.view with parameters of type NodeBranchDataAdapter

void	SetZoomAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	ChangePainterIDAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.window

Methods in info.bioinfweb.treegraph.gui.actions.window with parameters of type NodeBranchDataAdapter

void	PreviousDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)
void	NextDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs

Fields in info.bioinfweb.treegraph.gui.dialogs declared as NodeBranchDataAdapter

private NodeBranchDataAdapter

EditDialog.selectedAdapter

Methods in info.bioinfweb.treegraph.gui.dialogs that return NodeBranchDataAdapter

protected NodeBranchDataAdapter

EditDialog.getSelectedAdapter()

Methods in info.bioinfweb.treegraph.gui.dialogs with parameters of type NodeBranchDataAdapter

boolean	EditDialog.execute(Document document, TreeSelection selection, NodeBranchDataAdapter selectedAdapter)
protected void	EditDialog.setSelectedAdapter(NodeBranchDataAdapter selectedAdapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.io

Fields in info.bioinfweb.treegraph.gui.dialogs.io with type parameters of type NodeBranchDataAdapter

private java.util.Vector<NodeBranchDataAdapter>

ExportNodeDataTableModel.adapters

Methods in info.bioinfweb.treegraph.gui.dialogs.io that return NodeBranchDataAdapter

NodeBranchDataAdapter[]	AssignImportColumnsDialog.execute(int count, Tree tree)
NodeBranchDataAdapter	ExportNodeDataTableModel.get(int index)
NodeBranchDataAdapter	ExportNodeDataTableModel.remove(int index)
NodeBranchDataAdapter	ExportNodeDataTableModel.set(int index, NodeBranchDataAdapter adapter)

Methods in info.bioinfweb.treegraph.gui.dialogs.io with parameters of type NodeBranchDataAdapter

boolean	ExportNodeDataTableModel.add(NodeBranchDataAdapter adapter)
private java.lang.String	ExportNodeDataTableModel.getValue(NodeBranchDataAdapter adapter, Node node)
NodeBranchDataAdapter	ExportNodeDataTableModel.set(int index, NodeBranchDataAdapter adapter)

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic

Methods in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic with parameters of type NodeBranchDataAdapter

boolean

ExportToGraphicDialog.execute(Document document, TreeSelection selection, NodeBranchDataAdapter selectedAdapter) This method throws a Runtime exception if it is called.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.nodebranchdata

Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdata that return NodeBranchDataAdapter

NodeBranchDataAdapter	CopyColumnDialog.getDestAdapter()
NodeBranchDataAdapter	CopyColumnDialog.getSrcAdapter()

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput

Fields in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput declared as NodeBranchDataAdapter

private NodeBranchDataAdapter

NodeDataComboBoxModel.selected

Fields in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with type parameters of type NodeBranchDataAdapter

private java.util.Vector<NodeBranchDataAdapter>

NodeDataComboBoxModel.adapters

Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput that return NodeBranchDataAdapter

NodeBranchDataAdapter	NodeDataComboBoxModel.getElementAt(int pos)
NodeBranchDataAdapter	NodeBranchDataInput.getSelectedAdapter() Returns the currently selected adapter.
NodeBranchDataAdapter	NewNodeBranchDataInput.getSelectedAdapter()
NodeBranchDataAdapter	NodeDataComboBoxModel.getSelectedItem()

Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with parameters of type NodeBranchDataAdapter

boolean	NodeDataComboBoxModel.setSelectedAdapter(NodeBranchDataAdapter adapter) Selects the adapter which is an instance (not instance of a subclass) of same class as the given adapter and has the same ID (if it is an adapter for ID elements).
boolean	NodeBranchDataInput.setSelectedAdapter(NodeBranchDataAdapter adapter) Selects the adapter which is an instance (not instance of a subclass) of same class as the given adapter and has the same ID (if it is an adapter for ID elements).

Method parameters in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with type arguments of type NodeBranchDataAdapter

boolean	NodeDataComboBoxModel.setSelectedAdapter(java.lang.Class<? extends NodeBranchDataAdapter> adapterClass) Selects the adapter which is an instance (not instance of a subclass) of the given class.
boolean	NodeBranchDataInput.setSelectedAdapter(java.lang.Class<? extends NodeBranchDataAdapter> adapterClass) Selects the adapter which is an instance (not instance of a subclass) of the given class.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.treeframe

Fields in info.bioinfweb.treegraph.gui.treeframe with type parameters of type NodeBranchDataAdapter

private java.util.Vector<NodeBranchDataAdapter>

DocumentTableModel.adapters

Methods in info.bioinfweb.treegraph.gui.treeframe that return NodeBranchDataAdapter

NodeBranchDataAdapter	DocumentTableModel.getAdapter(int col)
NodeBranchDataAdapter	TreeInternalFrame.getSelectedAdapter() Returns the selected adapter in the node/branch data table.