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## E

EDGE_RADIUS_FACTOR - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.RoundRectangleIcon
edit - Variable in class info.bioinfweb.treegraph.gui.actions.edit.UndoRedoToAction
EditBranchLengthAction - Class in info.bioinfweb.treegraph.gui.actions.edit
EditBranchLengthAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditBranchLengthAction
EditBranchLengthDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement
  Dialog used to edit a branch length in a TreeGraph 2 document.
EditBranchLengthDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog
EditDialog - Class in info.bioinfweb.treegraph.gui.dialogs
  Abstract class implementing basic functionality for dialogs used to edit a TreeGraph 2 document.
EditDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.EditDialog
EditDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.EditDialog
EditDialogAction - Class in info.bioinfweb.treegraph.gui.actions
  Superclass for all actions that display a dialog.
EditDialogAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.EditDialogAction
EditElementFormatsAction - Class in info.bioinfweb.treegraph.gui.actions.format
EditElementFormatsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.EditElementFormatsAction
editFormatsGBC - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel
EditGlobalFormatsAction - Class in info.bioinfweb.treegraph.gui.actions.format
EditGlobalFormatsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.EditGlobalFormatsAction
editLegends() - Method in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit
editMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
EditNodeBranchDataEdit - Class in info.bioinfweb.treegraph.document.undo.edit
EditNodeBranchDataEdit(Document, Node) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit
edits - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
edits - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertLabelsEdit
editSubtreeLegends(Node) - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
  This method can be used to adopt the legends of a document prior to deleting a subtree.
EditTextElementAction - Class in info.bioinfweb.treegraph.gui.actions.edit
EditTextElementAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditTextElementAction
EditTextElementDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement
  Dialog used to edit a text element.
EditTextElementDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog
editUndoRedoMenus() - Method in class info.bioinfweb.treegraph.gui.actions.ActionManagement
  Sets the contents undo and redo menu or disables them.
element - Variable in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit
ELEMENT_SEPERATOR - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars
ElementFormats - Interface in info.bioinfweb.treegraph.document.format
  This interface should be implemented by all classes the represent formats of a `PaintableElement`.
ElementFormatsDialog - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats
  Dialog used to edit the element formats of a document element.
ElementFormatsDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
ElementFormatTab - Interface in info.bioinfweb.treegraph.gui.dialogs.elementformats
  Classes that implement single tabs of the `ElementFormatsDialog` must implement this interface.
elements - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
elements - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
elementToPosition(Document, float, float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
  Determines the element to a position defined by x- and y-coordinates (e.g. to select an element by mouse).
elementToPosition(Document, float, float, float) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.TreePositioner
  Return the SelectableElement of the tree in which the given coordinates are located.
EllipseIcon - Class in info.bioinfweb.treegraph.graphics.positionpaint.labelicons
EllipseIcon() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.EllipseIcon
EMFFactory - Class in info.bioinfweb.treegraph.graphics.export.emf
EMFFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFFactory
EMFFilter - Class in info.bioinfweb.treegraph.graphics.export.emf
EMFFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter
EMFWriter - Class in info.bioinfweb.treegraph.graphics.export.emf
EMFWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFWriter
EMPTY_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
ENCLOSED_NAME_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
encloseSubnodes(Node, boolean) - Static method in class info.bioinfweb.treegraph.document.NodeLadderizeComparable
  Encloses all direct subelements of `root` with a `NodeLadderizeComparable`- object and adds this objects to an array that is returned.
endRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
ensureContrast(Document, Node, Legend[]) - Method in class info.bioinfweb.treegraph.document.ContrastManager
  Checks the colors of all elements in the subtree under `root` (including `root` and its afferent branch) regarding to their contrast to the background color of the document.
ensureContrast(Document, Label) - Method in class info.bioinfweb.treegraph.document.ContrastManager
  Checks the text color of the specified label regarding to its contrast to the background color of the document.
ensureContrast(Document, Label[]) - Method in class info.bioinfweb.treegraph.document.ContrastManager
  Checks the text color of the specified labels regarding to their contrast to the background color of the document.
ensureContrast(Document, Legend) - Method in class info.bioinfweb.treegraph.document.ContrastManager
  Checks the text color of the specified legend regarding to its contrast to the background color of the document.
ensureLabelBlock(Labels, boolean, Color, Color) - Method in class info.bioinfweb.treegraph.document.ContrastManager
ensureLabelContrast(Document, Label) - Method in class info.bioinfweb.treegraph.document.ContrastManager
  Internal method which does not set `state = State.UNDEFINED`.
ensureLegendContrast(Document, Legend) - Method in class info.bioinfweb.treegraph.document.ContrastManager
ensureSubtreeContrast(Document, Node) - Method in class info.bioinfweb.treegraph.document.ContrastManager
  Rekursive method which contains the actual implementation.
entries - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
entrySet() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
equals(Object) - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension
equals(Object) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue
equals(Object) - Method in class info.bioinfweb.treegraph.document.format.Margin
equals(Object) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
equals(Object) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.AbstractIDElementAdapter
  Returns `true` if the specified object is an instance of the same class and has the same ID.
equals(Object) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.AbstractNodeBranchDataAdapter
  Returns `true` if the specified object is an instance of the same class.
equals(Object) - Method in class info.bioinfweb.treegraph.document.TextElementData
equals(Object) - Method in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.LeafField
error - Variable in exception info.bioinfweb.treegraph.document.io.nexus.NexusException
ERROR_URL - Static variable in class info.bioinfweb.treegraph.Main
errorHelpCode - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog
errorReporter - Variable in class info.bioinfweb.treegraph.Main
errors - Variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
evaluate() - Method in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
  Evaluates the expression of this instance.
evaluationStep(Object) - Method in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
  Evaluates the expression with one set of variable values.
examplePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
execute(Document, TreeSelection, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
execute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
execute(int, Tree) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog
execute(Document, TreeSelection, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
  This method throws a Runtime exception if it is called.
execute(TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
  This method should be called instead of `ExportToGraphicDialog#execute(Document, TreeSelection)`.
executeEdit(DocumentEdit) - Method in class info.bioinfweb.treegraph.document.Document
ExitAction - Class in info.bioinfweb.treegraph.gui.actions.file
ExitAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExitAction
EXPORT_FILE_EXT - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
ExportNodeDataTableModel - Class in info.bioinfweb.treegraph.gui.dialogs.io
ExportNodeDataTableModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
ExportNodeDataTableModel.Nodes - Enum in info.bioinfweb.treegraph.gui.dialogs.io
ExportNodeDataTableModel.Nodes() - Constructor for enum info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel.Nodes
ExportTableAction - Class in info.bioinfweb.treegraph.gui.actions.file
ExportTableAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportTableAction
ExportTableDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
ExportTableDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
ExportToGraphicAction - Class in info.bioinfweb.treegraph.gui.actions.file
ExportToGraphicAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction
ExportToGraphicDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic
ExportToGraphicDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
ExportToNewickNexusAction - Class in info.bioinfweb.treegraph.gui.actions.file
ExportToNewickNexusAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToNewickNexusAction
ExportToNewickStringDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
ExportToNewickStringDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
ExportToPDFAction - Class in info.bioinfweb.treegraph.gui.actions.file
ExportToPDFAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToPDFAction
expression - Variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
expressionPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog
expressions - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RecentlyUsedExpressionsListModel
expressionTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog
EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.tgf.TGFFilter
EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.xtg.XTGFilter
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.png.PNGFilter
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.svg.SVGFilter
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter
EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickFilter
EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusFilter
EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.SupportedFormatsFilter

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