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## Uses of Package
info.bioinfweb.treegraph.document

Packages that use info.bioinfweb.treegraph.document
info.bioinfweb.treegraph.document | Contains the classes that represent the data structure of TreeGraph 2 (document elements and formats) as well as all edit operations in the `undo`-package to manipulate the data structure and classes to read and write a document from and to different formats (`io`- subpackage).
info.bioinfweb.treegraph.document.clipboard | Classes in this package implement the clipboard of TreeGraph 2 used to copy document elements (subtrees, labels, legends, ...) between and inside tree documents.
info.bioinfweb.treegraph.document.format | Contains classes that store format information of the different document elements.
info.bioinfweb.treegraph.document.format.adapters.color |
info.bioinfweb.treegraph.document.format.adapters.distance |
info.bioinfweb.treegraph.document.io | Contains classes necessary to read and write the data structure of a TreeGraph 2 document from and to different formats.
info.bioinfweb.treegraph.document.io.newick | Contains classes implementing the import from and export to the Newick format.
info.bioinfweb.treegraph.document.io.nexus | Contains classes implementing the import from and export to the Nexus format.
info.bioinfweb.treegraph.document.io.phyloxml | Contains classes implementing the import from the phyloXML format.
info.bioinfweb.treegraph.document.io.tgf | The classes in this package were planned to allow the import of TGF files into TreeGraph 2.
info.bioinfweb.treegraph.document.io.xtg | Contains classes implementing reading and writing of TreeGraph 2 documents.
info.bioinfweb.treegraph.document.nodebranchdata | Contains classes that implement the access to different data fields of the document elements over the common interface `NodeBranchDataAdapter`.
info.bioinfweb.treegraph.document.undo | Contains all document edits to manipulate the TreeGraph 2 data structure.
info.bioinfweb.treegraph.document.undo.edit |
info.bioinfweb.treegraph.document.undo.file |
info.bioinfweb.treegraph.document.undo.file.addsupportvalues |
info.bioinfweb.treegraph.document.undo.format |
info.bioinfweb.treegraph.graphics.export | The classes in this package implement the export of a tree document to the different supported graphic formats.
info.bioinfweb.treegraph.graphics.positionpaint | The classes in this package implement the output of an TreeGraph 2 document with `Graphics2D`.
info.bioinfweb.treegraph.gui.actions | Contains the actions classes used in the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.actions.edit |
info.bioinfweb.treegraph.gui.actions.file |
info.bioinfweb.treegraph.gui.actions.format |
info.bioinfweb.treegraph.gui.actions.select |
info.bioinfweb.treegraph.gui.actions.view |
info.bioinfweb.treegraph.gui.actions.window |
info.bioinfweb.treegraph.gui.dialogs | Contains dialogs of the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.dialogs.editelement |
info.bioinfweb.treegraph.gui.dialogs.elementformats |
info.bioinfweb.treegraph.gui.dialogs.io |
info.bioinfweb.treegraph.gui.dialogs.io.exporttographic |
info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput |
info.bioinfweb.treegraph.gui.dialogs.specialformats |
info.bioinfweb.treegraph.gui.mainframe | Contains all classes directly related to the main frame.
info.bioinfweb.treegraph.gui.treeframe | Contains all classes that make up a document window.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document
AbstractTextElement This class can be used as the acestor of all classes that represent document elements which contain text or decimal values.
Branch The entity for a branch.
ConcretePaintableElement
ContrastManager.State
CornerRadiusElement
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
DocumentChangeEvent Event that indicates all types of changes in TreeGraph 2 document.
DocumentListener Classes implementing this interface can listen to changes made in a TreeGraph 2 document.
GraphicalLabel Abstract precursor of all graphical labels which allows to independently access the graphical label formats.
HiddenDataElement
HiddenDataMap
IconLabel
Label
LabelLine
Labels This class stores the Labels of a Node and provides infomation about whole rows and columns.
Legend
Legends
LineElement
Node This class represents a node of a tree in the TreeGraph data structure.
NodeLadderizeComparable This class is a wrapper class for `Node`-objects that allowws them to be compared by their number of terminal subnodes.
PaintableElement
PieChartLabel Represents a pie chart label.
PieColorManager Defines the default colors for the pies in pie chart labels.
ScaleBar This element represents a scale bar for the branch length values.
TextElement Implemented by all document elements which contains textual or numeric values.
TextElementData This class is used to store data of tree elements which can either be a string or a decimal value.
TextLabel
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.
TreeElement Implemented by document elements which are part of the tree (unlike e.g. legends or the scale bar).
TreePath This class stores the path to an node from the root of the tree or a specified ancestor.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.clipboard
Label
Labels This class stores the Labels of a Node and provides infomation about whole rows and columns.
Legend
Node This class represents a node of a tree in the TreeGraph data structure.
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.format
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Label
Legend
Legends
Node This class represents a node of a tree in the TreeGraph data structure.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.format.adapters.color
Node This class represents a node of a tree in the TreeGraph data structure.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.format.adapters.distance
Node This class represents a node of a tree in the TreeGraph data structure.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.io
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.io.newick
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Node This class represents a node of a tree in the TreeGraph data structure.
TextElementData This class is used to store data of tree elements which can either be a string or a decimal value.
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.io.nexus
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.io.phyloxml
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
HiddenDataMap
Node This class represents a node of a tree in the TreeGraph data structure.
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.io.tgf
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.io.xtg
Branch The entity for a branch.
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
HiddenDataMap
Label
Labels This class stores the Labels of a Node and provides infomation about whole rows and columns.
Legend
Legends
Node This class represents a node of a tree in the TreeGraph data structure.
PieChartLabel Represents a pie chart label.
ScaleBar This element represents a scale bar for the branch length values.
TextElementData This class is used to store data of tree elements which can either be a string or a decimal value.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.nodebranchdata
Branch The entity for a branch.
ConcretePaintableElement
HiddenDataMap
Node This class represents a node of a tree in the TreeGraph data structure.
TextElementData This class is used to store data of tree elements which can either be a string or a decimal value.
TextLabel

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.undo
Branch The entity for a branch.
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Legend
Node This class represents a node of a tree in the TreeGraph data structure.
TextElementData This class is used to store data of tree elements which can either be a string or a decimal value.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.undo.edit
Branch The entity for a branch.
ConcretePaintableElement
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Label
Labels This class stores the Labels of a Node and provides infomation about whole rows and columns.
Legend
Node This class represents a node of a tree in the TreeGraph data structure.
PieChartLabel Represents a pie chart label.
TextElement Implemented by all document elements which contains textual or numeric values.
TextElementData This class is used to store data of tree elements which can either be a string or a decimal value.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.undo.file
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Node This class represents a node of a tree in the TreeGraph data structure.
TextElementData This class is used to store data of tree elements which can either be a string or a decimal value.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.undo.file.addsupportvalues
Node This class represents a node of a tree in the TreeGraph data structure.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.document.undo.format
Branch The entity for a branch.
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Legend
Node This class represents a node of a tree in the TreeGraph data structure.
PaintableElement
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.graphics.export
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.graphics.positionpaint
Branch The entity for a branch.
ConcretePaintableElement
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Labels This class stores the Labels of a Node and provides infomation about whole rows and columns.
Legend
Legends
Node This class represents a node of a tree in the TreeGraph data structure.
ScaleBar This element represents a scale bar for the branch length values.
TextElement Implemented by all document elements which contains textual or numeric values.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.actions
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
PaintableElement

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.actions.edit
ContrastManager Ensures that document elements (that are e.g. pasted from the clipboard) have a sufficient contrast to the document background.
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Labels This class stores the Labels of a Node and provides infomation about whole rows and columns.
Legends
Node This class represents a node of a tree in the TreeGraph data structure.
TextElement Implemented by all document elements which contains textual or numeric values.
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.actions.file
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.actions.format
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.actions.select
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.actions.view
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.actions.window
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.dialogs
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.dialogs.editelement
GraphicalLabel Abstract precursor of all graphical labels which allows to independently access the graphical label formats.
TextElement Implemented by all document elements which contains textual or numeric values.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.dialogs.elementformats
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.dialogs.io
Node This class represents a node of a tree in the TreeGraph data structure.
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.dialogs.io.exporttographic
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.dialogs.specialformats
Node This class represents a node of a tree in the TreeGraph data structure.
Tree Instances of this class provide an environment for the recursive data-structure of tree-elements without their formats.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.mainframe
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.

Classes in info.bioinfweb.treegraph.document used by info.bioinfweb.treegraph.gui.treeframe
ConcretePaintableElement
Document Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
DocumentChangeEvent Event that indicates all types of changes in TreeGraph 2 document.
DocumentListener Classes implementing this interface can listen to changes made in a TreeGraph 2 document.
Node This class represents a node of a tree in the TreeGraph data structure.
PaintableElement

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