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## Uses of Interface
info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter

Packages that use NodeBranchDataAdapter
info.bioinfweb.treegraph.document | Contains the classes that represent the data structure of TreeGraph 2 (document elements and formats) as well as all edit operations in the `undo`-package to manipulate the data structure and classes to read and write a document from and to different formats (`io`- subpackage).
info.bioinfweb.treegraph.document.io | Contains classes necessary to read and write the data structure of a TreeGraph 2 document from and to different formats.
info.bioinfweb.treegraph.document.io.newick | Contains classes implementing the import from and export to the Newick format.
info.bioinfweb.treegraph.document.io.nexus | Contains classes implementing the import from and export to the Nexus format.
info.bioinfweb.treegraph.document.io.phyloxml | Contains classes implementing the import from the phyloXML format.
info.bioinfweb.treegraph.document.io.tgf | The classes in this package were planned to allow the import of TGF files into TreeGraph 2.
info.bioinfweb.treegraph.document.io.xtg | Contains classes implementing reading and writing of TreeGraph 2 documents.
info.bioinfweb.treegraph.document.nodebranchdata | Contains classes that implement the access to different data fields of the document elements over the common interface `NodeBranchDataAdapter`.
info.bioinfweb.treegraph.document.undo | Contains all document edits to manipulate the TreeGraph 2 data structure.
info.bioinfweb.treegraph.document.undo.edit |
info.bioinfweb.treegraph.document.undo.edit.calculatecolumn |
info.bioinfweb.treegraph.document.undo.file |
info.bioinfweb.treegraph.document.undo.format |
info.bioinfweb.treegraph.gui.actions | Contains the actions classes used in the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.actions.edit |
info.bioinfweb.treegraph.gui.actions.file |
info.bioinfweb.treegraph.gui.actions.format |
info.bioinfweb.treegraph.gui.actions.select |
info.bioinfweb.treegraph.gui.actions.view |
info.bioinfweb.treegraph.gui.actions.window |
info.bioinfweb.treegraph.gui.dialogs | Contains dialogs of the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.dialogs.io |
info.bioinfweb.treegraph.gui.dialogs.io.exporttographic |
info.bioinfweb.treegraph.gui.dialogs.nodebranchdata |
info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput |
info.bioinfweb.treegraph.gui.treeframe | Contains all classes that make up a document window.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document

Methods in info.bioinfweb.treegraph.document with parameters of type NodeBranchDataAdapter
`boolean` | `Tree.containsDecimal(NodeBranchDataAdapter adapter)` Tests if the tree contains a node which would be able to return a decimal value to the given adapter.
`static boolean` | `Tree.containsDecimal(NodeBranchDataAdapter adapter, Node root)` Tests if the subtree under `root` contains a node which would be able to return a decimal value to the given adapter.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io

Methods in info.bioinfweb.treegraph.document.io with parameters of type NodeBranchDataAdapter
`Document` | `DocumentReader.read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)`
`Document` | `AbstractDocumentReader.read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)`
`Document` | `DocumentReader.read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)`
`Document` | `AbstractDocumentReader.read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)` If you want to implement file specific functionalities you should override this method.
`Document` | `DocumentReader.read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)`
`Document` | `AbstractDocumentReader.read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)`
`Document` | `DocumentReader.read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)`
`void` | `DocumentWriter.write(Document document, File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)`
`void` | `AbstractDocumentWriter.write(Document document, File file, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)`
`void` | `DocumentWriter.write(Document document, OutputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.newick

Fields in info.bioinfweb.treegraph.document.io.newick declared as NodeBranchDataAdapter
`private NodeBranchDataAdapter` | `NewickStringReader.branchLengthsAdapter`
`private NodeBranchDataAdapter` | `NewickStringReader.internalAdapter`

Methods in info.bioinfweb.treegraph.document.io.newick with parameters of type NodeBranchDataAdapter
`private static String` | `NewickStringWriter.formatName(Node node, NodeBranchDataAdapter adapter)`
`Document` | `NewickReader.read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternals)`
`Document` | `NewickReader.read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternals)`
`static Tree[]` | `NewickStringReader.read(String[] newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TranslTable translTable, boolean translateInternals)`
`Tree` | `NewickStringReader.read(String newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)`
`Tree` | `NewickStringReader.read(String newick, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TranslTable translTable, boolean translateInternals)`
`private void` | `NewickStringReader.readName(int previousEnd, int end, Node root, NodeBranchDataAdapter adapter, TranslTable translTable)`
`void` | `NewickWriter.write(Document document, OutputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)`
`static String` | `NewickStringWriter.write(Tree tree, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)`
`private static String` | `NewickStringWriter.writeSubtree(Node root, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.nexus

Methods in info.bioinfweb.treegraph.document.io.nexus with parameters of type NodeBranchDataAdapter
`Tree[]` | `NexusDocument.createTrees(NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, boolean translateInternals)` Creates a `Tree` object from each stored Newick string.
`Document` | `NexusReader.read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthAdapter, TreeSelector selector, boolean translateInternalNodes)`
`Document` | `NexusReader.read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthAdapter, TreeSelector selector, boolean translateInternalNodes)`
`void` | `NexusWriter.write(Document document, OutputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.phyloxml

Methods in info.bioinfweb.treegraph.document.io.phyloxml with parameters of type NodeBranchDataAdapter
`Document` | `PhyloXMLReader.read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.tgf

Methods in info.bioinfweb.treegraph.document.io.tgf with parameters of type NodeBranchDataAdapter
`Document` | `TGFReader.read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.xtg

Methods in info.bioinfweb.treegraph.document.io.xtg with parameters of type NodeBranchDataAdapter
`Document` | `XTGReader.read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)`
`Document` | `XTGReader.read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)`
`void` | `XTGWriter.write(Document document, OutputStream stream, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)` A call of this method is identical with calling `XTGWriter.write(info.bioinfweb.treegraph.document.Document, java.io.OutputStream)` because the XTG format supports writing any number of labels by default and there is no need to replace internal node names by label values.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.nodebranchdata

Subinterfaces of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.nodebranchdata
`interface` | `IDElementAdapter` This interface should be implemented by all node data adapters that store an ID.
`interface` | `NewNodeDataAdapter` This interface should be implemented by all node data adapters that create a new node data column (e.g. a new group of labels).

Classes in info.bioinfweb.treegraph.document.nodebranchdata that implement NodeBranchDataAdapter
`class` | `AbstractIDElementAdapter` Node data adapters that need to store an ID can be inherited from this abstract class.
`class` | `AbstractNodeBranchDataAdapter` Implements a basic `equals()`-method for all node/branch data adapters.
`class` | `BranchLengthAdapter`
`class` | `HiddenBranchDataAdapter`
`class` | `HiddenDataAdapter`
`class` | `HiddenNodeDataAdapter`
`class` | `NewHiddenBranchDataAdapter` Creates a new hidden branch data column.
`class` | `NewHiddenNodeDataAdapter` Creates a new hidden node data column.
`class` | `NewTextLabelAdapter` Creates a new group of labels.
`class` | `NodeNameAdapter`
`class` | `TextElementDataAdapter` This abstract class implements basic funktionalities for adapters that deal with data stored in a `TextElementData`-object.
`class` | `TextLabelAdapter`
`class` | `UniqueNameAdapter`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo

Fields in info.bioinfweb.treegraph.document.undo declared as NodeBranchDataAdapter
`protected NodeBranchDataAdapter` | `NodeBranchDataEdit.adapter`
`private NodeBranchDataAdapter` | `NodeBranchDataBackup.adapter`

Constructors in info.bioinfweb.treegraph.document.undo with parameters of type NodeBranchDataAdapter
`NodeBranchDataBackup(NodeBranchDataAdapter adapter, Node root)`
`NodeBranchDataEdit(Document document, NodeBranchDataAdapter adapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.edit

Fields in info.bioinfweb.treegraph.document.undo.edit declared as NodeBranchDataAdapter
`private NodeBranchDataAdapter` | `RescaleNodeDataEdit.adapter`
`private NodeBranchDataAdapter` | `ReplaceInNodeDataEdit.adapter`
`private NodeBranchDataAdapter` | `CopyColumnEdit.source`

Fields in info.bioinfweb.treegraph.document.undo.edit with type parameters of type NodeBranchDataAdapter
`private Map<String,NodeBranchDataAdapter>` | `CalculateColumnEdit.adapterMap`

Methods in info.bioinfweb.treegraph.document.undo.edit that return types with arguments of type NodeBranchDataAdapter
`private HashMap<String,NodeBranchDataAdapter>` | `CalculateColumnEdit.createAdapterMap()`

Methods in info.bioinfweb.treegraph.document.undo.edit with parameters of type NodeBranchDataAdapter
`static void` | `DeleteColumnEdit.deleteSubtree(Node root, NodeBranchDataAdapter adapter)`
`private Object` | `CalculateColumnEdit.getCurrentValue(NodeBranchDataAdapter adapter)` Returns the value of the specified column in the current line (specified by `CalculateColumnEdit.position`).

Constructors in info.bioinfweb.treegraph.document.undo.edit with parameters of type NodeBranchDataAdapter
`CalculateColumnEdit(Document document, NodeBranchDataAdapter targetAdapter, String expression)`
`CopyColumnEdit(Document document, NodeBranchDataAdapter source, NodeBranchDataAdapter dest, boolean includeLeafs)`
`DeleteColumnEdit(Document document, NodeBranchDataAdapter adapter)`
`DeleteOutsideIntervalEdit(Document document, NodeBranchDataAdapter adapter, double lowerBorder, double upperBorder)`
`ReplaceInNodeDataEdit(Document document, NodeBranchDataAdapter adapter, ReplaceInNodeDataEdit.InsertPosition position, String oldText, String newText, boolean caseSensitive, boolean wordsOnly)`
`RescaleNodeDataEdit(Document document, NodeBranchDataAdapter adapter, double factor, double addend)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.edit.calculatecolumn

Methods in info.bioinfweb.treegraph.document.undo.edit.calculatecolumn with parameters of type NodeBranchDataAdapter
`abstract Object` | `IDFunction.getValue(NodeBranchDataAdapter id)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.file

Fields in info.bioinfweb.treegraph.document.undo.file declared as NodeBranchDataAdapter
`private NodeBranchDataAdapter` | `ApplyNameTableEdit.adapter`
`private NodeBranchDataAdapter[]` | `ImportTableEdit.adapters`
`private NodeBranchDataAdapter` | `AddSupportValuesEdit.sourceAdapter` The node/branch data to be imported (node names or branch lengths)

Methods in info.bioinfweb.treegraph.document.undo.file with parameters of type NodeBranchDataAdapter
`boolean` | `ImportTableEdit.importData(NodeBranchDataAdapter[] adapters, String[][] data)`
`private static boolean` | `AddSupportValuesEdit.internalsAreDecimal(Node root, NodeBranchDataAdapter adapter)` Tests if all internal nodes in the subtree under `root` contain decimal values.

Constructors in info.bioinfweb.treegraph.document.undo.file with parameters of type NodeBranchDataAdapter
`AddSupportValuesEdit(Document document, Document src, TextElementDataAdapter terminalsAdapter, AddSupportValuesEdit.TargetType targetType, String idPrefix, NodeBranchDataAdapter sourceAdapter, boolean processRooted)`
`ApplyNameTableEdit(Document document, NodeBranchDataAdapter adapter, List<String> oldNames, List<String> newNames, boolean ignoreWhitespaces, boolean caseSensitive, boolean parseNumericValues)`
`ImportTableEdit(Document document, String[][] data, NodeBranchDataAdapter[] adapters)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.format

Fields in info.bioinfweb.treegraph.document.undo.format declared as NodeBranchDataAdapter
`private NodeBranchDataAdapter` | `DistanceValuesByNodeBranchDataEdit.sourceAdapter`
`private NodeBranchDataAdapter` | `ColorsByNodeBranchDataEdit.sourceAdapter`

Methods in info.bioinfweb.treegraph.document.undo.format with parameters of type NodeBranchDataAdapter
`static double` | `NodeBranchDataFormatEdit.calculateMaxNodeData(NodeBranchDataAdapter adapter, Node root)` Searches for the maximal node data specified by `adapter` in the subtree under root.

Constructors in info.bioinfweb.treegraph.document.undo.format with parameters of type NodeBranchDataAdapter
`ColorsByNodeBranchDataEdit(Document document, NodeBranchDataAdapter sourceAdapter, Color min, Color max, boolean changeUndefined, boolean inheritToTerminals, ColorAdapter[] targetAdapters)`
`DistanceValuesByNodeBranchDataEdit(Document document, NodeBranchDataAdapter sourceAdapter, float min, float max, boolean changeUndefined, boolean inheritToTerminals, DistanceAdapter[] targetAdapters)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions

Methods in info.bioinfweb.treegraph.gui.actions with parameters of type NodeBranchDataAdapter
`private void` | `ActionManagement.setActionStatusBySelection(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`abstract void` | `DocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.edit

Methods in info.bioinfweb.treegraph.gui.actions.edit with parameters of type NodeBranchDataAdapter
`void` | `UndoRedoToAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `UndoAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SetColumnTypeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SeparateBranchAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SearchTextAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `RerootAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ReplaceInNodeDataAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `RenameDataIDAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `RedoAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `PasteAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `NewTextLabelAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `NewPieChartLabelsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `NewNodeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `NewLegendAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `NewIconLabelsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `MoveSubtreeUpAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `MoveSubtreeDownAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `LadderizeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `EditTextElementAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `EditPieChartLabelIDsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `EditBranchLengthAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `DeleteSubelementsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `DeleteOutsideIntervalAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `DeleteElementAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `DeleteColumnAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `CopyElementAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `CopyColumnAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `CopyAllLabelsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `CollapseNodeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ChangeLabelIDAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `CalculateColumnAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.file

Methods in info.bioinfweb.treegraph.gui.actions.file with parameters of type NodeBranchDataAdapter
`void` | `SaveAsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SaveAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `OpenAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `NewDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ImportTableAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ExportToPDFAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ExportToNewickNexusAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ExportToGraphicAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ExportTableAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ExitAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `CloseAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ApplyNameTableAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `AddSupportValuesAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.format

Methods in info.bioinfweb.treegraph.gui.actions.format with parameters of type NodeBranchDataAdapter
`void` | `ShowRootedAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ShowHideScaleBarAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ScaleDistanceValuesAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ScaleBranchLengthsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ReanchorLegendAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `EditGlobalFormatsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `EditElementFormatsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `DistanceValuesByNodeBranchDataAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ColorsByNodeBranchDataAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `AutoPositionLabelsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.select

Methods in info.bioinfweb.treegraph.gui.actions.select with parameters of type NodeBranchDataAdapter
`void` | `SelectTypeInSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectTypeInDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectLegendsWithPosIndexAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectLegendsInSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectLegendsAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectLeafsInSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectLeafsInDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectLabelsWithIDAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectLabelsInSubtreeAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `SelectAllAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `InvertSelectionAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.view

Methods in info.bioinfweb.treegraph.gui.actions.view with parameters of type NodeBranchDataAdapter
`void` | `SetZoomAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `ChangePainterIDAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.window

Methods in info.bioinfweb.treegraph.gui.actions.window with parameters of type NodeBranchDataAdapter
`void` | `PreviousDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`
`void` | `NextDocumentAction.setEnabled(Document document, TreeSelection selection, NodeBranchDataAdapter tableAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs

Fields in info.bioinfweb.treegraph.gui.dialogs declared as NodeBranchDataAdapter
`private NodeBranchDataAdapter` | `EditDialog.selectedAdapter`

Methods in info.bioinfweb.treegraph.gui.dialogs that return NodeBranchDataAdapter
`protected NodeBranchDataAdapter` | `EditDialog.getSelectedAdapter()`

Methods in info.bioinfweb.treegraph.gui.dialogs with parameters of type NodeBranchDataAdapter
`boolean` | `EditDialog.execute(Document document, TreeSelection selection, NodeBranchDataAdapter selectedAdapter)`
`protected void` | `EditDialog.setSelectedAdapter(NodeBranchDataAdapter selectedAdapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.io

Fields in info.bioinfweb.treegraph.gui.dialogs.io with type parameters of type NodeBranchDataAdapter
`private Vector<NodeBranchDataAdapter>` | `ExportNodeDataTableModel.adapters`

Methods in info.bioinfweb.treegraph.gui.dialogs.io that return NodeBranchDataAdapter
`NodeBranchDataAdapter[]` | `AssignImportColumnsDialog.execute(int count, Tree tree)`
`NodeBranchDataAdapter` | `ExportNodeDataTableModel.get(int index)`
`NodeBranchDataAdapter` | `ExportNodeDataTableModel.remove(int index)`
`NodeBranchDataAdapter` | `ExportNodeDataTableModel.set(int index, NodeBranchDataAdapter adapter)`

Methods in info.bioinfweb.treegraph.gui.dialogs.io with parameters of type NodeBranchDataAdapter
`boolean` | `ExportNodeDataTableModel.add(NodeBranchDataAdapter adapter)`
`private String` | `ExportNodeDataTableModel.getValue(NodeBranchDataAdapter adapter, Node node)`
`NodeBranchDataAdapter` | `ExportNodeDataTableModel.set(int index, NodeBranchDataAdapter adapter)`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic

Methods in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic with parameters of type NodeBranchDataAdapter
`boolean` | `ExportToGraphicDialog.execute(Document document, TreeSelection selection, NodeBranchDataAdapter selectedAdapter)` This method throws a Runtime exception if it is called.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.nodebranchdata

Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdata that return NodeBranchDataAdapter
`NodeBranchDataAdapter` | `CopyColumnDialog.getDestAdapter()`
`NodeBranchDataAdapter` | `CopyColumnDialog.getSrcAdapter()`

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput

Fields in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput declared as NodeBranchDataAdapter
`private NodeBranchDataAdapter` | `NodeDataComboBoxModel.selected`

Fields in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with type parameters of type NodeBranchDataAdapter
`private Vector<NodeBranchDataAdapter>` | `NodeDataComboBoxModel.adapters`

Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput that return NodeBranchDataAdapter
`NodeBranchDataAdapter` | `NodeDataComboBoxModel.getElementAt(int pos)`
`NodeBranchDataAdapter` | `NodeBranchDataInput.getSelectedAdapter()` Returns the currently selected adapter.
`NodeBranchDataAdapter` | `NewNodeBranchDataInput.getSelectedAdapter()`
`NodeBranchDataAdapter` | `NodeDataComboBoxModel.getSelectedItem()`

Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with parameters of type NodeBranchDataAdapter
`boolean` | `NodeDataComboBoxModel.setSelectedAdapter(NodeBranchDataAdapter adapter)` Selects the adapter which is an instance (not instance of a subclass) of same class as the given adapter and has the same ID (if it is an adapter for ID elements).
`boolean` | `NodeBranchDataInput.setSelectedAdapter(NodeBranchDataAdapter adapter)` Selects the adapter which is an instance (not instance of a subclass) of same class as the given adapter and has the same ID (if it is an adapter for ID elements).

Method parameters in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with type arguments of type NodeBranchDataAdapter
`boolean` | `NodeDataComboBoxModel.setSelectedAdapter(Class<? extends NodeBranchDataAdapter> adapterClass)` Selects the adapter which is an instance (not instance of a subclass) of the given class.
`boolean` | `NodeBranchDataInput.setSelectedAdapter(Class<? extends NodeBranchDataAdapter> adapterClass)` Selects the adapter which is an instance (not instance of a subclass) of the given class.

Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.treeframe

Fields in info.bioinfweb.treegraph.gui.treeframe with type parameters of type NodeBranchDataAdapter
`private Vector<NodeBranchDataAdapter>` | `DocumentTableModel.adapters`

Methods in info.bioinfweb.treegraph.gui.treeframe that return NodeBranchDataAdapter
`NodeBranchDataAdapter` | `DocumentTableModel.getAdapter(int col)`
`NodeBranchDataAdapter` | `TreeInternalFrame.getSelectedAdapter()` Returns the selected adapter in the node/branch data table.

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