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## D

DASH_LENGTH - Static variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
  The maximal length of a dash
data - Variable in class info.bioinfweb.treegraph.document.AbstractTextElement
data - Variable in class info.bioinfweb.treegraph.document.TextLabel
data - Variable in class info.bioinfweb.treegraph.document.undo.file.ImportTableEdit
DATA_COLUMN_WIDTH - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
DataIDComboBox - Class in info.bioinfweb.treegraph.gui.dialogs
  Component used to select data IDs (for labels, hidden node/branch data).
DataIDComboBox(boolean) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DataIDComboBox
decimal - Variable in class info.bioinfweb.treegraph.document.TextElementData
decimal - Variable in class info.bioinfweb.treegraph.document.undo.edit.SetColumnTypeEdit
decimal - Variable in class info.bioinfweb.treegraph.gui.actions.edit.SetColumnTypeAction
DECIMAL_COLUMN_HEADING - Static variable in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
DECIMAL_COLUMN_WIDTH - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
DECIMAL_FORMAT - Variable in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenDataAdapter
decimalCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
decimalFormat - Variable in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
decimalFormat - Variable in class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator
decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
decimalFormat - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
DecimalFormatOperator - Class in info.bioinfweb.treegraph.document.format.operate
  This operator is used to change the decimal format of a `TextFormats`-object.
DecimalFormatOperator(DecimalFormat, Locale) - Constructor for class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator
DecimalFormatPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats
  Panel of the `ElementFormatsDialog` used to edit the decimal formats of text elements.
DecimalFormatPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
  This is the default constructor
DecimalFormatsTableModel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats
  Table modes used with the `DecimalFormatPanel`.
DecimalFormatsTableModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
decimalFormatterFactory - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
decimalInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog
decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter
decimalOnly() - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter
decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter
decimalOnly() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter
DecimalUnitInput - Class in info.bioinfweb.treegraph.gui.dialogs
  Specialization of `DecimalInput` to manage distance values in different units.
DecimalUnitInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DecimalUnitInput
DecimalUnitInput(String, JPanel, int, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DecimalUnitInput
decRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
DEFAULT_ADAPTER - Static variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
DEFAULT_ALIGN_LEGENDS_TO_SUBTREE - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_ALIGNMENT - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_BACKGROUNG_COLOR - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_BRANCH_LENGTH_ID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
DEFAULT_BRANCH_LENGTH_SCALE - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_COLORS - Static variable in class info.bioinfweb.treegraph.document.PieColorManager
DEFAULT_COMPRESSION_METHOD - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFWriter
DEFAULT_CONFIDENCE_NAME - Static variable in interface info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLConstants
DEFAULT_DECIMAL_FORMAT_EXPR - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_FONT_NAME - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_ICON_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
DEFAULT_ICON_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
DEFAULT_INCREASING - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_LABEL_ID - Static variable in class info.bioinfweb.treegraph.cmd.CmdProcessor
DEFAULT_LINE_COLOR - Static variable in interface info.bioinfweb.treegraph.document.format.LineFormats
DEFAULT_LINE_WIDTH_IN_MM - Static variable in interface info.bioinfweb.treegraph.document.format.LineFormats
DEFAULT_LOCALE - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_LONG_INTERVAL - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_LONGEST_PATH_LENGTH - Static variable in class info.bioinfweb.treegraph.document.Tree
  The default length of the longest path from the root to a leaf in millimeters.
DEFAULT_LOWER_BORDER - Static variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog
DEFAULT_MARGIN_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.LabelFormats
DEFAULT_MAX_COLOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorPreviewPanel
DEFAULT_MAX_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog
DEFAULT_MIN_COLOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorPreviewPanel
DEFAULT_MIN_LENGTH - Static variable in class info.bioinfweb.treegraph.document.format.BranchFormats
DEFAULT_MIN_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog
DEFAULT_NODE_NAME_ID - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
DEFAULT_POSITION_LABELS_TO_LEFT - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_QUALITY - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGWriter
DEFAULT_SCALE - Static variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ScaleDistanceValuesDialog
DEFAULT_SELECTION_COLOR - Static variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
DEFAULT_SEPARATOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel
  The default separeter which is not a tab.
DEFAULT_SHOW_INTERNAL_LINES - Static variable in class info.bioinfweb.treegraph.document.format.PieChartLabelFormats
DEFAULT_SHOW_NULL_LINES - Static variable in class info.bioinfweb.treegraph.document.format.PieChartLabelFormats
DEFAULT_SHOW_ROOTED - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_SHOW_SCALE_BAR - Static variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
DEFAULT_SMALL_INTERVAL - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
  The default small interval length in branch length units.
DEFAULT_SMALL_INTERVAL_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
  The default small interval length in millimeters.
DEFAULT_SPACING_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.LegendFormats
DEFAULT_START_LEFT - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_TEXT_COLOR - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats
DEFAULT_TEXT_HEIGHT_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.TextLabelFormats
DEFAULT_TREE_DISTANCE_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
DEFAULT_TREE_NAME - Static variable in interface info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLConstants
DEFAULT_UPPER_BORDER - Static variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog
DEFAULT_WIDTH_IN_MM - Static variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
defaultDecimalFormat - Variable in class info.bioinfweb.treegraph.document.nodebranchdata.TextLabelAdapter
DefaultTreeSelector - Class in info.bioinfweb.treegraph.document.io
  This `TreeSelector` always selects the first tree.
DefaultTreeSelector() - Constructor for class info.bioinfweb.treegraph.document.io.DefaultTreeSelector
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenDataAdapter
delete(Node) - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextLabelAdapter
delete(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter
DeleteColumnAction - Class in info.bioinfweb.treegraph.gui.actions.edit
DeleteColumnAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.DeleteColumnAction
DeleteColumnEdit - Class in info.bioinfweb.treegraph.document.undo.edit
DeleteColumnEdit(Document, NodeBranchDataAdapter) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.DeleteColumnEdit
DeleteEdit - Class in info.bioinfweb.treegraph.document.undo.edit
  Removes all elements currently selected.
DeleteEdit(Document, ConcretePaintableElement[], boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
DeleteElementAction - Class in info.bioinfweb.treegraph.gui.actions.edit
DeleteElementAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction
deleteLength() - Method in class info.bioinfweb.treegraph.document.Branch
DeleteOutsideIntervalAction - Class in info.bioinfweb.treegraph.gui.actions.edit
DeleteOutsideIntervalAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.DeleteOutsideIntervalAction
DeleteOutsideIntervalEdit - Class in info.bioinfweb.treegraph.document.undo.edit
DeleteOutsideIntervalEdit(Document, NodeBranchDataAdapter, double, double) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.DeleteOutsideIntervalEdit
deleteOutsideIntervalSubtree(Node) - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteOutsideIntervalEdit
DeleteSubelementsAction - Class in info.bioinfweb.treegraph.gui.actions.edit
DeleteSubelementsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction
DeleteSubelementsEdit - Class in info.bioinfweb.treegraph.document.undo.edit
DeleteSubelementsEdit(Document, Node, boolean) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit
deleteSubtree(Node, NodeBranchDataAdapter) - Static method in class info.bioinfweb.treegraph.document.undo.edit.DeleteColumnEdit
deleteSubtreeElements() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
delimited - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickToken
desktopPane - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
destInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
destLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
dialog - Variable in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction
dialog - Variable in class info.bioinfweb.treegraph.gui.actions.EditDialogAction
dialog - Variable in class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction
dialog - Variable in class info.bioinfweb.treegraph.gui.actions.help.AboutAction
DIALOG_HELP_TOPIC - Static variable in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit
die() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit
difAbove - Variable in class info.bioinfweb.treegraph.document.position.NodePositionData
difBelow - Variable in class info.bioinfweb.treegraph.document.position.NodePositionData
dimensionPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel
dimensionsInPixels() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
dimensionsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
dimensionsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
directionPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
display() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog
  Packs, positions and shows this modal dialog if the message list is not empty.
distance - Variable in class info.bioinfweb.treegraph.document.format.operate.MinTreeDistanceOperator
DistanceAdapter - Interface in info.bioinfweb.treegraph.document.format.adapters.distance
DistanceAdapterListModel - Class in info.bioinfweb.treegraph.gui.dialogs.specialformats
DistanceAdapterListModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceAdapterListModel
DistanceDimension - Class in info.bioinfweb.treegraph.document.format
DistanceDimension() - Constructor for class info.bioinfweb.treegraph.document.format.DistanceDimension
DistanceDimension(DistanceValue, DistanceValue) - Constructor for class info.bioinfweb.treegraph.document.format.DistanceDimension
distancesPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog
DistanceValue - Class in info.bioinfweb.treegraph.document.format
  This class represents a distance in the document.
DistanceValue() - Constructor for class info.bioinfweb.treegraph.document.format.DistanceValue
DistanceValue(float) - Constructor for class info.bioinfweb.treegraph.document.format.DistanceValue
distanceValue - Variable in class info.bioinfweb.treegraph.document.format.ScaleValue
DistanceValueInput - Class in info.bioinfweb.treegraph.gui.dialogs
DistanceValueInput(String, JPanel, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput
DistanceValueInput(String, JPanel, int, int) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput
DistanceValuePopup - Class in info.bioinfweb.treegraph.gui.mainframe.tools
  Component to display a popup menu for a tool bar button.
DistanceValuePopup(Frame) - Constructor for class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup
DistanceValuesBackup - Class in info.bioinfweb.treegraph.document.undo.format
  Backups all distance values specified by the constructor parameter `targetAdapters` including legends line widths and text heights.
DistanceValuesBackup(Tree, Node, DistanceAdapter[]) - Constructor for class info.bioinfweb.treegraph.document.undo.format.DistanceValuesBackup
DistanceValuesByNodeBranchDataAction - Class in info.bioinfweb.treegraph.gui.actions.format
DistanceValuesByNodeBranchDataAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.DistanceValuesByNodeBranchDataAction
DistanceValuesByNodeBranchDataDialog - Class in info.bioinfweb.treegraph.gui.dialogs.specialformats
DistanceValuesByNodeBranchDataDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog
DistanceValuesByNodeBranchDataEdit - Class in info.bioinfweb.treegraph.document.undo.format
DistanceValuesByNodeBranchDataEdit(Document, NodeBranchDataAdapter, float, float, boolean, boolean, DistanceAdapter[]) - Constructor for class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.AbstractOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.ConstantWidthOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.CornerRadiusOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.DecimalFormatOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.FontNameOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.IconFilledOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.IconOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.InternalPieChartLinesOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelAboveOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelHeightOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelLineNumberOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelLinePositionOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LabelWidthOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LegendPositionOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LegendStyleOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LineColorOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.LineWidthOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinLengthOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinSpaceAboveOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinSpaceBelowOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.MinTreeDistanceOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.NullPieChartLinesOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.PieColorOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.ScaleBarFormatsOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextColorOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextHeightOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextOrientationOperator
doApplyTo(ElementFormats) - Method in class info.bioinfweb.treegraph.document.format.operate.TextStyleOperator
Document - Class in info.bioinfweb.treegraph.document
  Instances of this class contain the data for a tree and its formats as well as position-information for all `TreePositioner`s used with this `Document`.
Document() - Constructor for class info.bioinfweb.treegraph.document.Document
  Creates a new Instance of `Document` with a default name.
Document(String) - Constructor for class info.bioinfweb.treegraph.document.Document
  Creates a new Instance of `Document`.
Document(boolean) - Constructor for class info.bioinfweb.treegraph.document.Document
document - Variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentReader
document - Variable in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
document - Variable in class info.bioinfweb.treegraph.document.undo.DocumentEdit
document - Variable in class info.bioinfweb.treegraph.document.undo.edit.LegendPaster
document - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
document - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
document - Variable in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
document - Variable in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
document - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
document - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
DocumentAction - Class in info.bioinfweb.treegraph.gui.actions
  Implements basic functionality for all actions in TreeGraph 2 which are applied on opened documents.
DocumentAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.DocumentAction
DocumentChangeEvent - Class in info.bioinfweb.treegraph.document
  Event that indicates all types of changes in TreeGraph 2 document.
DocumentChangeEvent(Document) - Constructor for class info.bioinfweb.treegraph.document.DocumentChangeEvent
DocumentEdit - Class in info.bioinfweb.treegraph.document.undo
DocumentEdit(Document) - Constructor for class info.bioinfweb.treegraph.document.undo.DocumentEdit
DocumentFilter - Interface in info.bioinfweb.treegraph.document.io
  Extended interface for file filters used with `JFileChooser`.
DocumentListener - Interface in info.bioinfweb.treegraph.document
  Classes implementing this interface can listen to changes made in a TreeGraph 2 document.
documentMargin - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats
documentMarginInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
documentPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
DocumentReader - Interface in info.bioinfweb.treegraph.document.io
  Classes that are able to read tree documents should implement this interface.
documentSplitPane - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
DocumentTableModel - Class in info.bioinfweb.treegraph.gui.treeframe
  Table modes to display the node/branch data of a document in a `JTable`.
DocumentTableModel(Document) - Constructor for class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
  Creates a new `DocumentTableModel` which shows the tree contained in document.
DocumentWriter - Interface in info.bioinfweb.treegraph.document.io
doubleClick(MouseEvent, ConcretePaintableElement) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener
down - Variable in class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit
down - Variable in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit
down - Variable in class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction
downButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
DOWNLOAD_URL - Static variable in class info.bioinfweb.treegraph.Main
downRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
downwards - Variable in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.NodeInfo

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