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# Serialized Form

Package info.bioinfweb.treegraph.document

Class info.bioinfweb.treegraph.document.DocumentChangeEvent extends ChangeEvent implements Serializable

Class info.bioinfweb.treegraph.document.NoLinkedNodeException extends IllegalStateException implements Serializable

Package info.bioinfweb.treegraph.document.clipboard

Class info.bioinfweb.treegraph.document.clipboard.TreeClipboardException extends RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.format.operate

Class info.bioinfweb.treegraph.document.format.operate.InvalidTargetException extends RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.io

Class info.bioinfweb.treegraph.document.io.ReadWriteFactoryException extends RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.io.newick

Class info.bioinfweb.treegraph.document.io.newick.NewickException extends RuntimeException implements Serializable

serialVersionUID: 1L

Serialized Fields

### position

    int position

### sourceBefore

    String sourceBefore

### sourceAfter

    String sourceAfter

Package info.bioinfweb.treegraph.document.io.nexus

Class info.bioinfweb.treegraph.document.io.nexus.NexusException extends RuntimeException implements Serializable

Serialized Fields

### error

    NexusError error

Package info.bioinfweb.treegraph.document.nodebranchdata

Class info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataActionNotSupportedException extends RuntimeException implements Serializable

Package info.bioinfweb.treegraph.document.undo.edit

Class info.bioinfweb.treegraph.document.undo.edit.InvalidFormatException extends Exception implements Serializable

Package info.bioinfweb.treegraph.document.undo.edit.calculatecolumn

Class info.bioinfweb.treegraph.document.undo.edit.calculatecolumn.UndefinedIDException extends org.nfunk.jep.ParseException implements Serializable

Package info.bioinfweb.treegraph.gui.actions

Class info.bioinfweb.treegraph.gui.actions.DocumentAction extends TreeGraphAction implements Serializable

Serialized Fields

### mainFrame

    MainFrame mainFrame

Class info.bioinfweb.treegraph.gui.actions.EditDialogAction extends DocumentAction implements Serializable

Serialized Fields

### dialog

    EditDialog dialog

Class info.bioinfweb.treegraph.gui.actions.TreeGraphAction extends AbstractAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.edit

Class info.bioinfweb.treegraph.gui.actions.edit.CalculateColumnAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.ChangeLabelIDAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CollapseNodeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CopyAllLabelsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CopyColumnAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CopyElementAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.CutAction extends CopyElementAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.DeleteColumnAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.DeleteOutsideIntervalAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditBranchLengthAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditPieChartLabelIDsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.EditTextElementAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction extends DocumentAction implements Serializable

Serialized Fields

### down

    boolean down

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeDownAction extends LadderizeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.LadderizeUpAction extends LadderizeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeDownAction extends MoveSubtreeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeUpAction extends MoveSubtreeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewIconLabelsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewLegendAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewNodeAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewPieChartLabelsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.NewTextLabelAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.PasteAction extends DocumentAction implements Serializable

Serialized Fields

### contrastManager

    ContrastManager contrastManager

Class info.bioinfweb.treegraph.gui.actions.edit.RedoAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.RedoToAction extends UndoRedoToAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.RenameDataIDAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.ReplaceInNodeDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.RerootAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction extends DocumentAction implements Serializable

Serialized Fields

### dialog

    SearchTextDialog dialog

### selection

    TreeSelection selection

### pattern

    Pattern pattern

Class info.bioinfweb.treegraph.gui.actions.edit.SeparateBranchAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.SetColumnToDecimalAction extends SetColumnTypeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.SetColumnToTextAction extends SetColumnTypeAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.SetColumnTypeAction extends DocumentAction implements Serializable

Serialized Fields

### decimal

    boolean decimal

Class info.bioinfweb.treegraph.gui.actions.edit.UndoAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.edit.UndoRedoToAction extends DocumentAction implements Serializable

Serialized Fields

### edit

    UndoableEdit edit

Class info.bioinfweb.treegraph.gui.actions.edit.UndoToAction extends UndoRedoToAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.file

Class info.bioinfweb.treegraph.gui.actions.file.AddSupportValuesAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ApplyNameTableAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.CloseAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ExitAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ExportTableAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction extends EditDialogAction implements Serializable

Serialized Fields

### dialog

    ExportToGraphicDialog dialog

Class info.bioinfweb.treegraph.gui.actions.file.ExportToNewickNexusAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ExportToPDFAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.ImportTableAction extends DocumentAction implements Serializable

Serialized Fields

### importTableDialog

    ImportTableDialog importTableDialog

### assignImportColumnsDialog

    AssignImportColumnsDialog assignImportColumnsDialog

Class info.bioinfweb.treegraph.gui.actions.file.NewDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.OpenAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.SaveAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.file.SaveAsAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.format

Class info.bioinfweb.treegraph.gui.actions.format.AutoPositionLabelsAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ColorsByNodeBranchDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.DistanceValuesByNodeBranchDataAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.EditElementFormatsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.EditGlobalFormatsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ReanchorLegendAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ScaleBranchLengthsAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ScaleDistanceValuesAction extends EditDialogAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ShowHideScaleBarAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.format.ShowRootedAction extends DocumentAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.help

Class info.bioinfweb.treegraph.gui.actions.help.AboutAction extends TreeGraphAction implements Serializable

Serialized Fields

### dialog

    AboutDialog dialog

Class info.bioinfweb.treegraph.gui.actions.help.HelpAboutMenuAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpContentsAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpMainPageAction extends HelpTopicAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.help.HelpTopicAction extends TreeGraphAction implements Serializable

Serialized Fields

### topic

    int topic

Class info.bioinfweb.treegraph.gui.actions.help.HomepageAction extends TreeGraphAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.select

Class info.bioinfweb.treegraph.gui.actions.select.AbstractSelectionAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.InvertSelectionAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectAllAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsInSubtreeAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLabelsWithIDAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInDocumentAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLeafsInSubtreeAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsInSubtreeAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectLegendsWithPosIndexAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectSubtreeAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInDocumentAction extends AbstractSelectionAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.select.SelectTypeInSubtreeAction extends AbstractSelectionAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.view

Class info.bioinfweb.treegraph.gui.actions.view.ChangePainterIDAction extends DocumentAction implements Serializable

Serialized Fields

### type

    PositionPaintType type

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToHeightAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthHeightAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetUserZoomAction extends SetZoomAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetZoomAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.view.SetZoomToOriginalAction extends SetZoomAction implements Serializable

Package info.bioinfweb.treegraph.gui.actions.window

Class info.bioinfweb.treegraph.gui.actions.window.CascadeAction extends TreeGraphAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.NextDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.PreviousDocumentAction extends DocumentAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.SelectFrameAction extends TreeGraphAction implements Serializable

Serialized Fields

### frame

    JInternalFrame frame

Class info.bioinfweb.treegraph.gui.actions.window.TileHorizontalAction extends TreeGraphAction implements Serializable

Class info.bioinfweb.treegraph.gui.actions.window.TileVerticalAction extends TreeGraphAction implements Serializable

Package info.bioinfweb.treegraph.gui.dialogs

Class info.bioinfweb.treegraph.gui.dialogs.AboutDialog extends JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### HYPERLINK_LISTENER

    HyperlinkListener HYPERLINK_LISTENER

### jContentPane

    JPanel jContentPane

### contentsTabbedPane

    JTabbedPane contentsTabbedPane

### generalPanel

    JPanel generalPanel

### gplPanel

    JPanel gplPanel

### apachePanel

    JPanel apachePanel

### batikLabel

    JLabel batikLabel

### buttonPanel

    JPanel buttonPanel

### closeButton

    JButton closeButton

### apacheTextArea

    JEditorPane apacheTextArea

### apacheScrollPane

    JScrollPane apacheScrollPane

### gplScrollPane

    JScrollPane gplScrollPane

### gplEditorPane

    JEditorPane gplEditorPane

### generalScrollPane

    JScrollPane generalScrollPane

### generalEditorPane

    JEditorPane generalEditorPane

Class info.bioinfweb.treegraph.gui.dialogs.DataIDComboBox extends JComboBox implements Serializable

Class info.bioinfweb.treegraph.gui.dialogs.EditDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

Serialized Fields

### document

    Document document

### selection

    TreeSelection selection

### selectedAdapter

    NodeBranchDataAdapter selectedAdapter

Class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### formatsTabbedPane

    JTabbedPane formatsTabbedPane

### documentPanel

    JPanel documentPanel

### documentMarginInput

    MarginInput documentMarginInput

### branchLengthScaleInput

    DistanceValueInput branchLengthScaleInput

### colorChooser

    JColorChooser colorChooser

### showRootedCheckBox

    JCheckBox showRootedCheckBox

### showScaleBarCheckBox

    JCheckBox showScaleBarCheckBox

### alignToSubtreeCheckBox

    JCheckBox alignToSubtreeCheckBox

### labelsToLeftCheckBox

    JCheckBox labelsToLeftCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### replacePanel

    JPanel replacePanel

### nodeDataLabel

    JLabel nodeDataLabel

### adapterComboBox

    JComboBox adapterComboBox

### replaceLabel

    JLabel replaceLabel

### replaceTextField

    JTextField replaceTextField

### positionPanel

    JPanel positionPanel

### beginningRadioButton

    JRadioButton beginningRadioButton

### endRadioButton

    JRadioButton endRadioButton

### replaceRadioButton

    JRadioButton replaceRadioButton

### replaceTextLabel

    JLabel replaceTextLabel

### findTextField

    JTextField findTextField

### insertGroup

    ButtonGroup insertGroup

### caseSensitiveCheckBox

    JCheckBox caseSensitiveCheckBox

### wordsOnlyCheckBox

    JCheckBox wordsOnlyCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### lengthPanel

    JPanel lengthPanel

### lengthInput

    DistanceValueInput lengthInput

Class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### searchPanel

    JPanel searchPanel

### searchTextField

    JTextField searchTextField

### caseSensitiveCheckBox

    JCheckBox caseSensitiveCheckBox

### includeHiddenCheckBox

    JCheckBox includeHiddenCheckBox

### wordsOnlyCheckBox

    JCheckBox wordsOnlyCheckBox

Package info.bioinfweb.treegraph.gui.dialogs.editelement

Class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog extends EditDialog implements Serializable

Serialized Fields

### textElement

    TextElement textElement

### valuesPanel

    JPanel valuesPanel

### textLabel

    JLabel textLabel

### valueTextField

    JFormattedTextField valueTextField

### stringFormatterFactory

    JFormattedTextField.AbstractFormatterFactory stringFormatterFactory

### decimalFormatterFactory

    JFormattedTextField.AbstractFormatterFactory decimalFormatterFactory

### decimalCheckBox

    JCheckBox decimalCheckBox

### previewPanel

    JPanel previewPanel

### previewLabel

    JLabel previewLabel

Class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### idPanel

    JPanel idPanel

### idComboBox

    DataIDComboBox idComboBox

Class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### inputPanel

    JPanel inputPanel

### decimalInput

    info.webinsel.util.swing.DecimalInput decimalInput

### hasLengthCheckBox

    JCheckBox hasLengthCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.editelement.EditPieChartLabelsDialog extends NewPieChartLabelsDialog implements Serializable

serialVersionUID: 1L

Class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog extends AbstractTextElementDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

Class info.bioinfweb.treegraph.gui.dialogs.editelement.NewGraphicalLabelsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### idPanel

    JPanel idPanel

### idComboBox

    DataIDComboBox idComboBox

Class info.bioinfweb.treegraph.gui.dialogs.editelement.NewIconLabelsDialog extends NewGraphicalLabelsDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### formatsPanel

    IconPieChartLabelPanel formatsPanel

Class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog extends NewGraphicalLabelsDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### valuesPanel

    JPanel valuesPanel

### listIDComboBox

    DataIDComboBox listIDComboBox

### idList

    JList idList

### addButton

    JButton addButton

### replaceButton

    JButton replaceButton

### removeButton

    JButton removeButton

### idListScrollPane

    JScrollPane idListScrollPane

Class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog extends AbstractTextElementDialog implements Serializable

Serialized Fields

### jContentPane

    JPanel jContentPane

### idPanel

    JPanel idPanel

### idComboBox

    DataIDComboBox idComboBox

Package info.bioinfweb.treegraph.gui.dialogs.elementformats

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### minLengthInput

    DistanceValueInput minLengthInput

### spaceAboveInput

    DistanceValueInput spaceAboveInput

### spaceBelowInput

    DistanceValueInput spaceBelowInput

### spacer

    JLabel spacer

### constantWidthCheckBox

    JCheckBox constantWidthCheckBox

### constantWidthMonitor

    info.webinsel.util.ChangeMonitor constantWidthMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### formatPanel

    JPanel formatPanel

### examplePanel

    JPanel examplePanel

### formatLabel

    JLabel formatLabel

### formatTextField

    JTextField formatTextField

### predifinedTable

    JTable predifinedTable

### localeComboBox

    JComboBox localeComboBox

### localeLabel

    JLabel localeLabel

### changeMonitor

    info.webinsel.util.swing.SwingChangeMonitor changeMonitor

### tableScrollPane

    JScrollPane tableScrollPane

### positiveExampleLabel

    JLabel positiveExampleLabel

### negativeExampleLabel

    JLabel negativeExampleLabel

### hintLabel

    JLabel hintLabel

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel extends AbstractTableModel implements Serializable

Serialized Fields

### entries

    Vector<E> entries

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### formatsTabbedPane

    JTabbedPane formatsTabbedPane

### tabs

    Vector<E> tabs

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontColorPanel extends JColorChooser implements Serializable

serialVersionUID: 1L

Serialized Fields

### colorMonitor

    info.webinsel.util.swing.SwingChangeMonitor colorMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### fontFamilyPanel

    JPanel fontFamilyPanel

### fontStylePanel

    JPanel fontStylePanel

### fontHeightPanel

    JPanel fontHeightPanel

### previewPanel

    JPanel previewPanel

### boldCheckBox

    JCheckBox boldCheckBox

### italicCheckBox

    JCheckBox italicCheckBox

### underlineCheckBox

    JCheckBox underlineCheckBox

### fontHeightInput

    DistanceValueInput fontHeightInput

### previewTextField

    JTextField previewTextField

### fontFamilyList

    JList fontFamilyList

### fontFamilyTextField

    JTextField fontFamilyTextField

### fontFamilyMonitor

    info.webinsel.util.swing.SwingChangeMonitor fontFamilyMonitor

### boldMonitor

    info.webinsel.util.ChangeMonitor boldMonitor

### italicMonitor

    info.webinsel.util.ChangeMonitor italicMonitor

### underlineMonitor

    info.webinsel.util.ChangeMonitor underlineMonitor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel extends JPanel implements Serializable

Serialized Fields

### iconMonitor

    info.webinsel.util.swing.SwingChangeMonitor iconMonitor

### iconFilledMonitor

    info.webinsel.util.swing.SwingChangeMonitor iconFilledMonitor

### pieColorMonitor

    info.webinsel.util.ChangeMonitor pieColorMonitor

### internalLinesMonitor

    info.webinsel.util.ChangeMonitor internalLinesMonitor

### nullLinesMonitor

    info.webinsel.util.ChangeMonitor nullLinesMonitor

### iconPanel

    JPanel iconPanel

### iconComboBox

    JComboBox iconComboBox

### iconPreviewPanel

    IconPreviewPanel iconPreviewPanel

### iconWidthInput

    DistanceValueInput iconWidthInput

### iconHeightInput

    DistanceValueInput iconHeightInput

### iconFilledCheckBox

    JCheckBox iconFilledCheckBox

### dimensionPanel

    JPanel dimensionPanel

### pieChartPanel

    JPanel pieChartPanel

### previewLabel

    JLabel previewLabel

### colorListScrollPane

    JScrollPane colorListScrollPane

### colorList

    JList colorList

### colorLabel

    JLabel colorLabel

### showInternalLinesCheckBox

    JCheckBox showInternalLinesCheckBox

### showNullLinesCheckBox

    JCheckBox showNullLinesCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPreviewPanel extends JPanel implements Serializable

Serialized Fields

### formats

    IconLabelFormats formats

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelIconComboBoxModel extends AbstractListModel implements Serializable

Serialized Fields

### items

    Vector<E> items

### selected

    String selected

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### decimalFormat

    DecimalFormat decimalFormat

### aboveRadioButton

    JRadioButton aboveRadioButton

### belowRadioButton

    JRadioButton belowRadioButton

### lineNoLabel

    JLabel lineNoLabel

### lineNoTextField

    JFormattedTextField lineNoTextField

### linePosLabel

    JLabel linePosLabel

### linePosTextField

    JFormattedTextField linePosTextField

### aboveBelowGroup

    ButtonGroup aboveBelowGroup

### aboveMonitor

    info.webinsel.util.swing.SwingChangeMonitor aboveMonitor

### lineNoMonitor

    info.webinsel.util.swing.SwingChangeMonitor lineNoMonitor

### linePosMonitor

    info.webinsel.util.swing.SwingChangeMonitor linePosMonitor

### aboveBelowPanel

    JPanel aboveBelowPanel

### labelNumbersPanel

    JPanel labelNumbersPanel

### marginPanel

    JPanel marginPanel

### marginInput

    MarginInput marginInput

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### decimalFormat

    DecimalFormat decimalFormat

### legendStylePanel

    JPanel legendStylePanel

### bracketRadioButton

    JRadioButton bracketRadioButton

### braceRadioButton

    JRadioButton braceRadioButton

### legendOrientationPanel

    JPanel legendOrientationPanel

### horizontalRadioButton

    JRadioButton horizontalRadioButton

### upRadioButton

    JRadioButton upRadioButton

### downRadioButton

    JRadioButton downRadioButton

### styleGroup

    ButtonGroup styleGroup

### orientationGroup

    ButtonGroup orientationGroup

### styleMonitor

    info.webinsel.util.swing.SwingChangeMonitor styleMonitor

### orientationMonitor

    info.webinsel.util.swing.SwingChangeMonitor orientationMonitor

### legendNumbersPanel

    JPanel legendNumbersPanel

### legendPositionTextField

    JFormattedTextField legendPositionTextField

### legendPositionMonitor

    info.webinsel.util.swing.SwingChangeMonitor legendPositionMonitor

### minTreeDistanceInput

    DistanceValueInput minTreeDistanceInput

### legendOrderLabel

    JLabel legendOrderLabel

### marginPanel

    JPanel marginPanel

### marginInput

    MarginInput marginInput

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### colorChooser

    JColorChooser colorChooser

### colorMonitor

    info.webinsel.util.swing.SwingChangeMonitor colorMonitor

### lineColorPanel

    JPanel lineColorPanel

### otherLineFormatsPanel

    JPanel otherLineFormatsPanel

### lineWidthInput

    DistanceValueInput lineWidthInput

### cornerRadiusInput

    DistanceValueInput cornerRadiusInput

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.NodeMarginPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### marginPanel

    JPanel marginPanel

### marginInput

    MarginInput marginInput

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### owner

    ElementFormatsDialog owner

### alignmentPanel

    JPanel alignmentPanel

### leftRadioButton

    JRadioButton leftRadioButton

### rightRadioButton

    JRadioButton rightRadioButton

### treeWidthRadioButton

    JRadioButton treeWidthRadioButton

### alignGroup

    ButtonGroup alignGroup

### alignMonitor

    info.webinsel.util.swing.SwingChangeMonitor alignMonitor

### increaseMonitor

    info.webinsel.util.swing.SwingChangeMonitor increaseMonitor

### startMonitor

    info.webinsel.util.swing.SwingChangeMonitor startMonitor

### intervalPanel

    JPanel intervalPanel

### treeDistanceInput

    DistanceValueInput treeDistanceInput

### widthInput

    ScaleValueInput widthInput

### heightInput

    DistanceValueInput heightInput

### smallIntervalInput

    info.webinsel.util.swing.DecimalInput smallIntervalInput

### longIntervalInput

    info.webinsel.util.swing.DecimalInput longIntervalInput

### dimensionsPanel

    JPanel dimensionsPanel

### startPanel

    JPanel startPanel

### zeroLeftRadioButton

    JRadioButton zeroLeftRadioButton

### zeroRightRadioButton

    JRadioButton zeroRightRadioButton

### zeroPosGroup

    ButtonGroup zeroPosGroup

### labelingPanel

    JPanel labelingPanel

### directionPanel

    JPanel directionPanel

### incRadioButton

    JRadioButton incRadioButton

### decRadioButton

    JRadioButton decRadioButton

### increaseGroup

    ButtonGroup increaseGroup

### smallIntervalLengthLabel

    JLabel smallIntervalLengthLabel

### longIntervalLengthLabel

    JLabel longIntervalLengthLabel

### smallIntervalKeyListener

    ScaleBarIntervalKeyListener smallIntervalKeyListener

### longIntervalKeyListener

    ScaleBarIntervalKeyListener longIntervalKeyListener

Package info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor

Class info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor.PieColorCellRenderer extends JLabel implements Serializable

Serialized Fields

### icon

    PieColorIcon icon

Package info.bioinfweb.treegraph.gui.dialogs.io

Class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### fileChooserPanel

    JPanel fileChooserPanel

### fileChooser

    JFileChooser fileChooser

### idNamePanel

    JPanel idNamePanel

### idNameTextField

    JTextField idNameTextField

### terminalDataInput

    NodeBranchDataInput terminalDataInput

### prefixLabel

    JLabel prefixLabel

### targetTypePanel

    JPanel targetTypePanel

### labelRadioButton

    JRadioButton labelRadioButton

### branchDataRadioButton

    JRadioButton branchDataRadioButton

### nodeDataRadioButton

    JRadioButton nodeDataRadioButton

### terminalsPanel

    JPanel terminalsPanel

### terminalsLabel

    JLabel terminalsLabel

### targetDataButtonGroup

    ButtonGroup targetDataButtonGroup

### importButtonGroup

    ButtonGroup importButtonGroup

### translateInternalsCheckBox

    JCheckBox translateInternalsCheckBox

### importPanel

    JPanel importPanel

### nodeNamesRadioButton

    JRadioButton nodeNamesRadioButton

### branchLengthsRadioButton

    JRadioButton branchLengthsRadioButton

### nexusFilter

    NexusFilter nexusFilter

Class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### fileChooser

    JFileChooser fileChooser

### separatorPanel

    TableSeparatorPanel separatorPanel

### nodeDataPanel

    JPanel nodeDataPanel

### adapterComboBox

    JComboBox adapterComboBox

### fileChooserPanel

    JPanel fileChooserPanel

### whitespaceCheckBox

    JCheckBox whitespaceCheckBox

### parseNumericValuesCheckBox

    JCheckBox parseNumericValuesCheckBox

### caseSensitiveCheckBox

    JCheckBox caseSensitiveCheckBox

### nodeDataLabel

    JLabel nodeDataLabel

Class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### importPanel

    JPanel importPanel

### typeLabel

    JLabel typeLabel

### idLabel

    JLabel idLabel

### inputs

    Vector<E> inputs

### firstLineLabel

    JLabel firstLineLabel

### uniqueNamesLabel

    JLabel uniqueNamesLabel

Class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel extends AbstractTableModel implements Serializable

Serialized Fields

### adapters

    Vector<E> adapters

### nodes

    ExportNodeDataTableModel.Nodes nodes

### writer

    OutputStreamWriter writer

Class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### nodeDataPanel

    JPanel nodeDataPanel

### nodeDataInput

    NodeBranchDataInput nodeDataInput

### tableScrollPane

    JScrollPane tableScrollPane

### table

    JTable table

### nodeDataButtonsPanel

    JPanel nodeDataButtonsPanel

### addButton

    JButton addButton

### replaceButton

    JButton replaceButton

### removeButton

    JButton removeButton

### clearButton

    JButton clearButton

### upButton

    JButton upButton

### downButton

    JButton downButton

### filePanel

    JPanel filePanel

### fileTextField

    JTextField fileTextField

### fileButton

    JButton fileButton

### fileChooser

    JFileChooser fileChooser

### NodesPanel

    JPanel NodesPanel

### nodesGroup

    ButtonGroup nodesGroup

### InternalsRadioButton

    JRadioButton InternalsRadioButton

### LeafsRadioButton

    JRadioButton LeafsRadioButton

### bothRadioButton

    JRadioButton bothRadioButton

Class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### fileChooser

    JFileChooser fileChooser

### nexusFilter

    NexusFilter nexusFilter

### nodeDataPanel

    JPanel nodeDataPanel

### internalInput

    NodeBranchDataInput internalInput

### leafInput

    NodeBranchDataInput leafInput

### branchLengthInput

    NodeBranchDataInput branchLengthInput

### internalLabel

    JLabel internalLabel

### leafLabel

    JLabel leafLabel

### branchLengthCheckBox

    JCheckBox branchLengthCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog extends EditDialog implements Serializable

Serialized Fields

### option

    FileDialog.Option option

Class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### filePanel

    JPanel filePanel

### separatorPanel

    TableSeparatorPanel separatorPanel

### fileChooser

    JFileChooser fileChooser

Class info.bioinfweb.treegraph.gui.dialogs.io.NewickExceptionDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### messagePanel

    JPanel messagePanel

### sourceBeforeLabel

    JLabel sourceBeforeLabel

### headingLabel

    JLabel headingLabel

### sourceAfterLabel

    JLabel sourceAfterLabel

### messageLabel

    JLabel messageLabel

### messageContentLabel

    JLabel messageContentLabel

### positionLabel

    JLabel positionLabel

### positionContentLabel

    JLabel positionContentLabel

### sourceLabel

    JLabel sourceLabel

### positionArrowLabel

    JLabel positionArrowLabel

Class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### fileChooserPanel

    JPanel fileChooserPanel

### fileChooser

    JFileChooser fileChooser

### internalNodesPanel

    JPanel internalNodesPanel

### nodeNamesDataInput

    NewNodeBranchDataInput nodeNamesDataInput

### branchLengthsDataInput

    NewNodeBranchDataInput branchLengthsDataInput

### translateInternalNodesCheckBox

    JCheckBox translateInternalNodesCheckBox

### branchLengthsPanel

    JPanel branchLengthsPanel

### xtgFilter

    XTGFilter xtgFilter

### nexusFilter

    NexusFilter nexusFilter

### newickFilter

    NewickFilter newickFilter

### newickExceptionDialog

    NewickExceptionDialog newickExceptionDialog

Class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel extends JPanel implements Serializable

Serialized Fields

### tabRadioButton

    JRadioButton tabRadioButton

### stringRadioButton

    JRadioButton stringRadioButton

### separatorTextField

    JTextField separatorTextField

### separatorGroup

    ButtonGroup separatorGroup

Class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog extends info.webinsel.wikihelp.client.OkCancelApplyWikiHelpDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### trees

    Tree[] trees

### currentTree

    int currentTree

### jContentPane

    JPanel jContentPane

### selectionPanel

    JPanel selectionPanel

### treeComboBox

    JComboBox treeComboBox

### previewPanel

    JPanel previewPanel

### previewScrollPane

    JScrollPane previewScrollPane

### treeViewPanel

    TreeViewPanel treeViewPanel

Package info.bioinfweb.treegraph.gui.dialogs.io.exporttographic

Class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog extends FileDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### dimensionsPanel

    JPanel dimensionsPanel

### resolutionInput

    ResolutionInput resolutionInput

### widthLabel

    JLabel widthLabel

### heightLabel

    JLabel heightLabel

### widthTextField

    JTextField widthTextField

### heightTextField

    JTextField heightTextField

### unitComboBox

    JComboBox unitComboBox

### spacerLabel

    JLabel spacerLabel

### fileChooser

    JFileChooser fileChooser

### fileChooserPanel

    JPanel fileChooserPanel

### outerPreferencesPanel

    JPanel outerPreferencesPanel

### commandPanel

    JPanel commandPanel

### openRadioButton

    JRadioButton openRadioButton

### printRadioButton

    JRadioButton printRadioButton

### noneRadioButton

    JRadioButton noneRadioButton

### commandGroup

    ButtonGroup commandGroup

### lastSelection

    int lastSelection

  Used to convert the width and height values if their unit is changed by the user.

### decimalFormat

    DecimalFormat decimalFormat

### aspectRatio

    float aspectRatio

### preferencesPanel

    PreferencesPanel preferencesPanel

### treeFrame

    TreeInternalFrame treeFrame

Class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.JPEGPrefPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### qualityLabel

    JLabel qualityLabel

### qualitySlider

    JSlider qualitySlider

### highestComprLabel

    JLabel highestComprLabel

### bestQualityLabel

    JLabel bestQualityLabel

Class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TIFFPrefPanel extends TransparentBgPrefPanel implements Serializable

Serialized Fields

### compressionMethodLabel

    JLabel compressionMethodLabel

### compressionMethodComboBox

    JComboBox compressionMethodComboBox

Class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TransparentBgPrefPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### transparentCheckBox

    JCheckBox transparentCheckBox

Package info.bioinfweb.treegraph.gui.dialogs.io.loadlogger

Class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog extends JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### logger

    LoadLogger logger

### jContentPane

    JPanel jContentPane

### messagesScrollPane

    JScrollPane messagesScrollPane

### buttonsPanel

    JPanel buttonsPanel

### closeButton

    JButton closeButton

### messageList

    JList messageList

Class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.MessagesListModel extends AbstractListModel implements Serializable

Serialized Fields

### list

    Vector<E> list

Package info.bioinfweb.treegraph.gui.dialogs.nodebranchdata

Class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### expressionPanel

    JPanel expressionPanel

### expressionTextField

    JTextField expressionTextField

### recentlyUsedPanel

    JPanel recentlyUsedPanel

### recentlyUsedScrollPane

    JScrollPane recentlyUsedScrollPane

### recentlyUsedList

    JList recentlyUsedList

### columnPanel

    JPanel columnPanel

### columnInput

    NewNodeBranchDataInput columnInput

Class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### copyPanel

    JPanel copyPanel

### srcLabel

    JLabel srcLabel

### srcInput

    NodeBranchDataInput srcInput

### destLabel

    JLabel destLabel

### labelIDLabel

    JLabel labelIDLabel

### destInput

    NewNodeBranchDataInput destInput

### includeLeafsCheckBox

    JCheckBox includeLeafsCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### intervalPanel

    JPanel intervalPanel

### upperInput

    info.webinsel.util.swing.DecimalInput upperInput

### lowerInput

    info.webinsel.util.swing.DecimalInput lowerInput

### sourcePanel

    JPanel sourcePanel

### sourceInput

    NodeBranchDataInput sourceInput

Class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RecentlyUsedExpressionsListModel extends AbstractListModel implements Serializable

Serialized Fields

### expressions

    List<E> expressions

Class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog extends EditDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### oldNames

    String[] oldNames

### jContentPane

    JPanel jContentPane

### labelIDPanel

    JPanel labelIDPanel

### newNameTextField

    JTextField newNameTextField

### renameButton

    JButton renameButton

### idList

    JList idList

Package info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput

Class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NodeDataComboBoxModel extends AbstractListModel implements Serializable

Serialized Fields

### adapters

    Vector<E> adapters

### selected

    NodeBranchDataAdapter selected

Package info.bioinfweb.treegraph.gui.dialogs.specialformats

Class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorAdapterListModel extends AbstractListModel implements Serializable

Serialized Fields

### adapters

    List<E> adapters

Class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorPreviewPanel extends JPanel implements Serializable

Serialized Fields

### minColor

    Color minColor

### maxColor

    Color maxColor

Class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog extends FormatsByNodeBranchDataDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### self

    ColorsByNodeBranchDataDialog self

  This field is necessary to acces this intance from the action listeners.

### jContentPane

    JPanel jContentPane

### colorPanel

    JPanel colorPanel

### minMaxPanel

    JPanel minMaxPanel

### minColorButton

    JButton minColorButton

### colorPreviewPanel

    ColorPreviewPanel colorPreviewPanel

### maxColorButton

    JButton maxColorButton

### changeUndefinedCheckBox

    JCheckBox changeUndefinedCheckBox

### inheritToTerminalsCheckBox

    JCheckBox inheritToTerminalsCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceAdapterListModel extends AbstractListModel implements Serializable

Serialized Fields

### adapters

    List<E> adapters

Class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog extends FormatsByNodeBranchDataDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### distancesPanel

    JPanel distancesPanel

### minWidthInput

    DistanceValueInput minWidthInput

### maxWidthInput

    DistanceValueInput maxWidthInput

### changeUndefinedCheckBox

    JCheckBox changeUndefinedCheckBox

### inheritToTerminalsCheckBox

    JCheckBox inheritToTerminalsCheckBox

Class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog extends SpecialFormatsDialog implements Serializable

Serialized Fields

### errorHelpCode

    int errorHelpCode

### sourceComboBox

    JComboBox sourceComboBox

### sourcePanel

    JPanel sourcePanel

Class info.bioinfweb.treegraph.gui.dialogs.specialformats.ScaleDistanceValuesDialog extends SpecialFormatsDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### scalePanel

    JPanel scalePanel

### scaleInput

    info.webinsel.util.swing.DecimalInput scaleInput

Class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog extends EditDialog implements Serializable

Serialized Fields

### targetPanel

    JPanel targetPanel

### targetScrollPane

    JScrollPane targetScrollPane

### targetList

    JList targetList

### targetListModel

    ListModel targetListModel

Package info.bioinfweb.treegraph.gui.mainframe

Class info.bioinfweb.treegraph.gui.mainframe.MainFrame extends JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

### actionManagement

    ActionManagement actionManagement

### windowListener

    WindowListener windowListener

### mainMenu

    JMenuBar mainMenu

### fileMenu

    JMenu fileMenu

### editMenu

    JMenu editMenu

### viewMenu

    JMenu viewMenu

### helpMenu

    JMenu helpMenu

### jContentPane

    JPanel jContentPane

### desktopPane

    info.webinsel.util.swing.ExtendedDesktopPane desktopPane

### windowMenu

    JMenu windowMenu

### formatMenu

    JMenu formatMenu

### selectMenu

    JMenu selectMenu

### toolBarPanel

    JPanel toolBarPanel

### undoMenu

    JMenu undoMenu

### redoMenu

    JMenu redoMenu

### newMenu

    JMenu newMenu

### nodeBranchDataMenu

    JMenu nodeBranchDataMenu

Class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel extends JPanel implements Serializable

Serialized Fields

### mainFrame

    MainFrame mainFrame

### orientation

    ToolBarPanel.ToolBarOrientation orientation

### upperToolBar

    JToolBar upperToolBar

### lowerToolBar

    JToolBar lowerToolBar

### editFormatsGBC

    GridBagConstraints editFormatsGBC

### fileViewWindowGBC

    GridBagConstraints fileViewWindowGBC

Package info.bioinfweb.treegraph.gui.mainframe.tools

Class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup extends info.webinsel.util.swing.ToolBarPopup implements Serializable

serialVersionUID: 1L

Serialized Fields

### jContentPane

    JPanel jContentPane

### input

    DistanceValueInput input

### slider

    JSlider slider

Package info.bioinfweb.treegraph.gui.treeframe

Class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel extends AbstractTableModel implements Serializable

Serialized Fields

### adapters

    Vector<E> adapters

### nodes

    Vector<E> nodes

### document

    Document document

Class info.bioinfweb.treegraph.gui.treeframe.HelpButton extends JButton implements Serializable

Class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame extends JInternalFrame implements Serializable

Serialized Fields

### document

    Document document

### internalFrameListener

    InternalFrameListener internalFrameListener

### jContentPane

    JPanel jContentPane

### documentSplitPane

    JSplitPane documentSplitPane

### treeScrollPane

    JScrollPane treeScrollPane

### treeViewPanel

    TreeViewPanel treeViewPanel

### treeViewInputListener

    TreeEditlInputListener treeViewInputListener

### tableScrollPane

    JScrollPane tableScrollPane

### table

    JTable table

Class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

### selection

    TreeSelection selection

### document

    Document document

### zoom

    float zoom

### painterType

    PositionPaintType painterType

### treeViewListeners

    Vector<E> treeViewListeners

Package info.bioinfweb.treegraph.gui.treeframe.ruler

Class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler extends JPanel implements Serializable

Serialized Fields

### orientation

    RulerOrientation orientation

### unit

    RulerUnit unit

### treeViewPanel

    TreeViewPanel treeViewPanel

Class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField extends JComponent implements Serializable

Serialized Fields

### horizontalRuler

    TreeViewRuler horizontalRuler

### verticalRuler

    TreeViewRuler verticalRuler

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