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# TreeGraph 2.0.44

Packages
info.bioinfweb.treegraph | All classes of the TreeGraph 2 application are contained in this package or one of its subpackeges.
info.bioinfweb.treegraph.cmd | Contains classes that process the command line arguments for TreeGraph 2.
info.bioinfweb.treegraph.document | Contains the classes that represent the data structure of TreeGraph 2 (document elements and formats) as well as all edit operations in the `undo`-package to manipulate the data structure and classes to read and write a document from and to different formats (`io`- subpackage).
info.bioinfweb.treegraph.document.clipboard | Classes in this package implement the clipboard of TreeGraph 2 used to copy document elements (subtrees, labels, legends, ...) between and inside tree documents.
info.bioinfweb.treegraph.document.format | Contains classes that store format information of the different document elements.
info.bioinfweb.treegraph.document.format.adapters.color |
info.bioinfweb.treegraph.document.format.adapters.distance |
info.bioinfweb.treegraph.document.format.operate | Format operators are used to change single formats of document elements.
info.bioinfweb.treegraph.document.io | Contains classes necessary to read and write the data structure of a TreeGraph 2 document from and to different formats.
info.bioinfweb.treegraph.document.io.log | Classes related to logging messages of document readers are contained in this package.
info.bioinfweb.treegraph.document.io.newick | Contains classes implementing the import from and export to the Newick format.
info.bioinfweb.treegraph.document.io.nexus | Contains classes implementing the import from and export to the Nexus format.
info.bioinfweb.treegraph.document.io.phyloxml | Contains classes implementing the import from the phyloXML format.
info.bioinfweb.treegraph.document.io.tgf | The classes in this package were planned to allow the import of TGF files into TreeGraph 2.
info.bioinfweb.treegraph.document.io.xtg | Contains classes implementing reading and writing of TreeGraph 2 documents.
info.bioinfweb.treegraph.document.nodebranchdata | Contains classes that implement the access to different data fields of the document elements over the common interface `NodeBranchDataAdapter`.
info.bioinfweb.treegraph.document.position | Contains classes used by the positioners and painters (see package `info.bioinfweb.treegraph.graphics.positionpaint`) to store information about the positions where the document elements will be painted.
info.bioinfweb.treegraph.document.undo | Contains all document edits to manipulate the TreeGraph 2 data structure.
info.bioinfweb.treegraph.document.undo.edit |
info.bioinfweb.treegraph.document.undo.edit.calculatecolumn |
info.bioinfweb.treegraph.document.undo.file |
info.bioinfweb.treegraph.document.undo.file.addsupportvalues |
info.bioinfweb.treegraph.document.undo.format |
info.bioinfweb.treegraph.graphics.export | The classes in this package implement the export of a tree document to the different supported graphic formats.
info.bioinfweb.treegraph.graphics.export.emf | The classes of this package implement exporting trees to a Windows Enhanced Metafile (EMF).
info.bioinfweb.treegraph.graphics.export.jpeg | The classes of this package implement exporting trees to the JPEG File Interchange Format.
info.bioinfweb.treegraph.graphics.export.pdf | The classes of this package implement exporting trees to the Portable Document Format (PDF).
info.bioinfweb.treegraph.graphics.export.png | The classes of this package implement exporting trees as Portable network graphics (PNG).
info.bioinfweb.treegraph.graphics.export.svg | The classes of this package implement exporting trees as Scalable vector graphics (SVG).
info.bioinfweb.treegraph.graphics.export.tiff | The classes of this package implement exporting trees to the Tagged Image File Format (TIFF).
info.bioinfweb.treegraph.graphics.positionpaint | The classes in this package implement the output of an TreeGraph 2 document with `Graphics2D`.
info.bioinfweb.treegraph.graphics.positionpaint.labelicons |
info.bioinfweb.treegraph.gui | Contains the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.actions | Contains the actions classes used in the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.actions.edit |
info.bioinfweb.treegraph.gui.actions.file |
info.bioinfweb.treegraph.gui.actions.format |
info.bioinfweb.treegraph.gui.actions.help |
info.bioinfweb.treegraph.gui.actions.select |
info.bioinfweb.treegraph.gui.actions.view |
info.bioinfweb.treegraph.gui.actions.window |
info.bioinfweb.treegraph.gui.dialogs | Contains dialogs of the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.dialogs.editelement |
info.bioinfweb.treegraph.gui.dialogs.elementformats |
info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor |
info.bioinfweb.treegraph.gui.dialogs.io |
info.bioinfweb.treegraph.gui.dialogs.io.exporttographic |
info.bioinfweb.treegraph.gui.dialogs.io.loadlogger |
info.bioinfweb.treegraph.gui.dialogs.nodebranchdata |
info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput |
info.bioinfweb.treegraph.gui.dialogs.specialformats |
info.bioinfweb.treegraph.gui.mainframe | Contains all classes directly related to the main frame.
info.bioinfweb.treegraph.gui.mainframe.tools |
info.bioinfweb.treegraph.gui.treeframe | Contains all classes that make up a document window.
info.bioinfweb.treegraph.gui.treeframe.ruler |

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