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info.bioinfweb.treegraph.document.io
Interface DocumentReader

All Known Implementing Classes:
AbstractDocumentReader, NewickReader, NexusReader, PhyloXMLReader, TextStreamReader, TGFReader, XTGReader
public interface DocumentReader

Classes that are able to read tree documents should implement this interface.

Author:
Ben Stöver

Method Summary
 Document read(File file, LoadLogger loadLogger)
           
 Document read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
           
 Document read(File file, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)
           
 Document read(InputStream stream, LoadLogger loadLogger)
           
 Document read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter)
           
 Document read(InputStream stream, LoadLogger loadLogger, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter branchLengthsAdapter, TreeSelector selector, boolean translateInternalNodes)
           
 

Method Detail

read

Document read(InputStream stream,
              LoadLogger loadLogger)
              throws Exception
Throws:
Exception

read

Document read(File file,
              LoadLogger loadLogger)
              throws Exception
Throws:
Exception

read

Document read(InputStream stream,
              LoadLogger loadLogger,
              NodeBranchDataAdapter internalAdapter,
              NodeBranchDataAdapter branchLengthsAdapter)
              throws Exception
Throws:
Exception

read

Document read(File file,
              LoadLogger loadLogger,
              NodeBranchDataAdapter internalAdapter,
              NodeBranchDataAdapter branchLengthsAdapter)
              throws Exception
Throws:
Exception

read

Document read(InputStream stream,
              LoadLogger loadLogger,
              NodeBranchDataAdapter internalAdapter,
              NodeBranchDataAdapter branchLengthsAdapter,
              TreeSelector selector,
              boolean translateInternalNodes)
              throws Exception
Throws:
Exception

read

Document read(File file,
              LoadLogger loadLogger,
              NodeBranchDataAdapter internalAdapter,
              NodeBranchDataAdapter branchLengthsAdapter,
              TreeSelector selector,
              boolean translateInternalNodes)
              throws Exception
Throws:
Exception
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