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TreeGraph 2
 


TreeGraph 2.0.44

Packages
info.bioinfweb.treegraph All classes of the TreeGraph 2 application are contained in this package or one of its subpackeges.
info.bioinfweb.treegraph.cmd Contains classes that process the command line arguments for TreeGraph 2.
info.bioinfweb.treegraph.document Contains the classes that represent the data structure of TreeGraph 2 (document elements and formats) as well as all edit operations in the undo-package to manipulate the data structure and classes to read and write a document from and to different formats (io- subpackage).
info.bioinfweb.treegraph.document.clipboard Classes in this package implement the clipboard of TreeGraph 2 used to copy document elements (subtrees, labels, legends, ...) between and inside tree documents.
info.bioinfweb.treegraph.document.format Contains classes that store format information of the different document elements.
info.bioinfweb.treegraph.document.format.adapters.color  
info.bioinfweb.treegraph.document.format.adapters.distance  
info.bioinfweb.treegraph.document.format.operate Format operators are used to change single formats of document elements.
info.bioinfweb.treegraph.document.io Contains classes necessary to read and write the data structure of a TreeGraph 2 document from and to different formats.
info.bioinfweb.treegraph.document.io.log Classes related to logging messages of document readers are contained in this package.
info.bioinfweb.treegraph.document.io.newick Contains classes implementing the import from and export to the Newick format.
info.bioinfweb.treegraph.document.io.nexus Contains classes implementing the import from and export to the Nexus format.
info.bioinfweb.treegraph.document.io.phyloxml Contains classes implementing the import from the phyloXML format.
info.bioinfweb.treegraph.document.io.tgf The classes in this package were planned to allow the import of TGF files into TreeGraph 2.
info.bioinfweb.treegraph.document.io.xtg Contains classes implementing reading and writing of TreeGraph 2 documents.
info.bioinfweb.treegraph.document.nodebranchdata Contains classes that implement the access to different data fields of the document elements over the common interface NodeBranchDataAdapter.
info.bioinfweb.treegraph.document.position Contains classes used by the positioners and painters (see package info.bioinfweb.treegraph.graphics.positionpaint) to store information about the positions where the document elements will be painted.
info.bioinfweb.treegraph.document.undo Contains all document edits to manipulate the TreeGraph 2 data structure.
info.bioinfweb.treegraph.document.undo.edit  
info.bioinfweb.treegraph.document.undo.edit.calculatecolumn  
info.bioinfweb.treegraph.document.undo.file  
info.bioinfweb.treegraph.document.undo.file.addsupportvalues  
info.bioinfweb.treegraph.document.undo.format  
info.bioinfweb.treegraph.graphics.export The classes in this package implement the export of a tree document to the different supported graphic formats.
info.bioinfweb.treegraph.graphics.export.emf The classes of this package implement exporting trees to a Windows Enhanced Metafile (EMF).
info.bioinfweb.treegraph.graphics.export.jpeg The classes of this package implement exporting trees to the JPEG File Interchange Format.
info.bioinfweb.treegraph.graphics.export.pdf The classes of this package implement exporting trees to the Portable Document Format (PDF).
info.bioinfweb.treegraph.graphics.export.png The classes of this package implement exporting trees as Portable network graphics (PNG).
info.bioinfweb.treegraph.graphics.export.svg The classes of this package implement exporting trees as Scalable vector graphics (SVG).
info.bioinfweb.treegraph.graphics.export.tiff The classes of this package implement exporting trees to the Tagged Image File Format (TIFF).
info.bioinfweb.treegraph.graphics.positionpaint The classes in this package implement the output of an TreeGraph 2 document with Graphics2D.
info.bioinfweb.treegraph.graphics.positionpaint.labelicons  
info.bioinfweb.treegraph.gui Contains the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.actions Contains the actions classes used in the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.actions.edit  
info.bioinfweb.treegraph.gui.actions.file  
info.bioinfweb.treegraph.gui.actions.format  
info.bioinfweb.treegraph.gui.actions.help  
info.bioinfweb.treegraph.gui.actions.select  
info.bioinfweb.treegraph.gui.actions.view  
info.bioinfweb.treegraph.gui.actions.window  
info.bioinfweb.treegraph.gui.dialogs Contains dialogs of the TreeGraph 2 GUI.
info.bioinfweb.treegraph.gui.dialogs.editelement  
info.bioinfweb.treegraph.gui.dialogs.elementformats  
info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor  
info.bioinfweb.treegraph.gui.dialogs.io  
info.bioinfweb.treegraph.gui.dialogs.io.exporttographic  
info.bioinfweb.treegraph.gui.dialogs.io.loadlogger  
info.bioinfweb.treegraph.gui.dialogs.nodebranchdata  
info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput  
info.bioinfweb.treegraph.gui.dialogs.specialformats  
info.bioinfweb.treegraph.gui.mainframe Contains all classes directly related to the main frame.
info.bioinfweb.treegraph.gui.mainframe.tools  
info.bioinfweb.treegraph.gui.treeframe Contains all classes that make up a document window.
info.bioinfweb.treegraph.gui.treeframe.ruler