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| Packages that use DocumentReader | |
|---|---|
| info.bioinfweb.treegraph.document.io | Contains classes necessary to read and write the data structure of a TreeGraph 2 document from and to different formats. |
| info.bioinfweb.treegraph.document.io.newick | Contains classes implementing the import from and export to the Newick format. |
| info.bioinfweb.treegraph.document.io.nexus | Contains classes implementing the import from and export to the Nexus format. |
| info.bioinfweb.treegraph.document.io.phyloxml | Contains classes implementing the import from the phyloXML format. |
| info.bioinfweb.treegraph.document.io.tgf | The classes in this package were planned to allow the import of TGF files into TreeGraph 2. |
| info.bioinfweb.treegraph.document.io.xtg | Contains classes implementing reading and writing of TreeGraph 2 documents. |
| Uses of DocumentReader in info.bioinfweb.treegraph.document.io |
|---|
| Classes in info.bioinfweb.treegraph.document.io that implement DocumentReader | |
|---|---|
class |
AbstractDocumentReader
Implements basic functionality (especially method delegation) for document readers. |
class |
TextStreamReader
|
| Methods in info.bioinfweb.treegraph.document.io that return DocumentReader | |
|---|---|
DocumentReader |
SingleReadWriteFactory.getReader()
|
DocumentReader |
ReadWriteFactory.getReader(File file)
|
DocumentReader |
ReadWriteFactory.getReader(ReadWriteFormat f)
|
| Uses of DocumentReader in info.bioinfweb.treegraph.document.io.newick |
|---|
| Classes in info.bioinfweb.treegraph.document.io.newick that implement DocumentReader | |
|---|---|
class |
NewickReader
Reads text files consisting only of Newick strings. |
| Methods in info.bioinfweb.treegraph.document.io.newick that return DocumentReader | |
|---|---|
DocumentReader |
NewickFactory.getReader()
|
| Uses of DocumentReader in info.bioinfweb.treegraph.document.io.nexus |
|---|
| Classes in info.bioinfweb.treegraph.document.io.nexus that implement DocumentReader | |
|---|---|
class |
NexusReader
This class reads a tree loads a tree out of a Nexus file. |
| Methods in info.bioinfweb.treegraph.document.io.nexus that return DocumentReader | |
|---|---|
DocumentReader |
NexusFactory.getReader()
|
| Uses of DocumentReader in info.bioinfweb.treegraph.document.io.phyloxml |
|---|
| Classes in info.bioinfweb.treegraph.document.io.phyloxml that implement DocumentReader | |
|---|---|
class |
PhyloXMLReader
Reads a phyloXML document. |
| Methods in info.bioinfweb.treegraph.document.io.phyloxml that return DocumentReader | |
|---|---|
DocumentReader |
PhyloXMLFactory.getReader()
|
| Uses of DocumentReader in info.bioinfweb.treegraph.document.io.tgf |
|---|
| Classes in info.bioinfweb.treegraph.document.io.tgf that implement DocumentReader | |
|---|---|
class |
TGFReader
|
| Methods in info.bioinfweb.treegraph.document.io.tgf that return DocumentReader | |
|---|---|
DocumentReader |
TGFFactory.getReader()
|
| Uses of DocumentReader in info.bioinfweb.treegraph.document.io.xtg |
|---|
| Classes in info.bioinfweb.treegraph.document.io.xtg that implement DocumentReader | |
|---|---|
class |
XTGReader
Reads the TreeGraph 2 specific XML format (*.xtg). |
| Methods in info.bioinfweb.treegraph.document.io.xtg that return DocumentReader | |
|---|---|
DocumentReader |
XTGFactory.getReader()
|
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