TreeGraph 2 - A feature rich and easy to use phylogenetic tree editor

Example of possible formats in TreeGraph 2
Example of some possible formats in TreeGraph 2  [Enlarge]  [Download]

TreeGraph 2 is a is graphical editor for phylogenetic trees, which allows to apply various of graphical formats and edit operations and supports several (visible or invisible) annotations attached to nodes or branches. Data can be imported from many tree formats, tables and BayesTraits output. A key feature is the interactive comparison and combination of alternative topologies from different analyses. TreeGraph 2 is licensed under GNU General Public License.

TreeGraph 2 is developed by Ben Stöver, Sarah Wiechers, and Kai Müller.

If you need help on using TreeGraph 2 or want to know more feel free to ask a question on its ResearchGate project page or contact You can find more software developed by the authors at


TreeGraph 2 has been published in BMC Bioinformatics:

Key features

Getting started

Command line precursor

The command line based precursor of TreeGraph 2 allows creating annotated trees in a LaTeX like language and can be found under

News from bioinfweb

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Version 0.5.3 of <i>JPhyloIO</i> released

Mar 20, 2019: Version 0.5.3 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.

Mar 12, 2019: Web service for viewing JPhyloIO event streams

A web service for JPhyloIO that lists event streams produced from any phylogenetic input file is now available as part of the JPhyloIO documentation. It allows developers to easily inspect the stream of linear data events JPhyloIO produces from a MSA or tree document. This is helpful for getting started with JPhyloIO or for debugging purposes.

Try it here

New version of <i>PhyDE 2</i> available

Nov 29, 2018: New version of PhyDE 2 available

A new version of PhyDE 2 is now available. It allows to edit several multiple sequence alignments at the same time.

Version 3.3.0 of <i></i> released

Nov 15, 2018: Version 3.3.0 of released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.

Version 1.1.0 of <i>AlignmentComparator</i> released

Apr 18, 2018: Version 1.1.0 of AlignmentComparator released

A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.

This is the first feature-complete version of AlignmentComparator that now allows to compare any number of alignments and to attach notes to the comparison.

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