Help (Main Page)
From TreeGraph help
This MediaWiki provides the online help for the tree editor TreeGraph 2. You can access it from the help menu of the application or the context specific help buttons in all dialogs as well as directly with your browser. Additionally you can use the search field on the left to look for answers to your questions.
Video tutorials All articles TreeGraph 2 main menu Categories TreeGraph 2 publication
Content overview
This section lists some of the many features of TreeGraph 2 by different categories. You can alternatively have a look and the categories section or the alphabetical index which lists all articles.
The paper describing TreeGraph 2 (Stöver B C, Müller K F: TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses. BMC Bioinformatics 2010, 11:7) provides an overview about the functionalities as well.
Getting started
- Tutorials
- Open files
- Main menu (Links all functions of TreeGraph 2 in the order they can be accessed from the application main menu)
The application
Import/export
- Open files
- Adding support values (Merging support values from different analyses)
- Applying name tables
- Importing node/branch data (Importing annotations from tables)
- Exporting trees as graphics
- Exporting trees as Newick/Nexus files
- Exporting node/branch data (Exporting annotations to tables)
Parts of a TreeGraph 2 document
Formatting
- Element formats
- Document formats
- Set colors by node/branch data (Allows you to display annotations as colors.)
- Set distance values by node/branch data (Allows you to display annotations e.g. as branch widths or text heights.)
- Scaling distance values
Annotations
- Node/branch data
- Text label
- Hidden node/branch data
- Adding support values
- Calculating node/branch data (Allows you to calculate annotations by mathematical expressions from other annotations.)
- Deleting node/branch data outside interval
- Data table of the document window
Tree editing
- This page was last modified 15:35, 29 July 2010.
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