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info.bioinfweb.treegraph.document.io.newick
Class NewickStringWriter

java.lang.Object
  info.bioinfweb.treegraph.document.io.newick.NewickStringChars
      info.bioinfweb.treegraph.document.io.newick.NewickStringWriter

public class NewickStringWriter
extends NewickStringChars

Field Summary

Fields inherited from class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

COMMENT_END, COMMENT_START, ELEMENT_SEPERATOR, FREE_NAME_BLANK, LENGTH_SEPERATOR, NAME_DELIMITER, SUBTREE_END, SUBTREE_START, TERMINAL_SYMBOL

Constructor Summary

NewickStringWriter()

Method Summary

private static String	formatName(Node node, NodeBranchDataAdapter adapter)
private static boolean	isFreeName(String name)
static String	write(Tree tree, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)
private static String	writeSubtree(Node root, NodeBranchDataAdapter internalAdapter, NodeBranchDataAdapter leafAdapter, NodeBranchDataAdapter branchLengthAdapter)

Methods inherited from class info.bioinfweb.treegraph.document.io.newick.NewickStringChars

isCharAfterLength, isFreeNameChar, isFreeNameFirstChar

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NewickStringWriter

public NewickStringWriter()

Method Detail

isFreeName

private static boolean isFreeName(String name)

formatName

private static String formatName(Node node,
                                 NodeBranchDataAdapter adapter)

writeSubtree

private static String writeSubtree(Node root,
                                   NodeBranchDataAdapter internalAdapter,
                                   NodeBranchDataAdapter leafAdapter,
                                   NodeBranchDataAdapter branchLengthAdapter)

write

public static String write(Tree tree,
                           NodeBranchDataAdapter internalAdapter,
                           NodeBranchDataAdapter leafAdapter,
                           NodeBranchDataAdapter branchLengthAdapter)