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TreeGraph 2
 


Package info.bioinfweb.treegraph.document.io.newick

Contains classes implementing the import from and export to the Newick format.

See:
          Description

Class Summary
BranchLengthsScaler Sets the branch lengths scale of a tree so that the contained branched have a specific average length.
CommentDataReader Reads hidden node data from a comment in a Newick string like it is generated by BEAST.
NewickFactory  
NewickFilter  
NewickReader Reads text files consisting only of Newick strings.
NewickScanner  
NewickStringChars  
NewickStringReader
This class converts a tree in the Newick format to a Document.
NewickStringWriter  
NewickToken  
NewickWriter This class writes a Document in a nexus file (contains only the newick string).
 

Enum Summary
NewickReader.Status  
TokenType  
 

Exception Summary
NewickException An instance of this exception is thrown if an input newick string contains a syntactical error and cannot be read.
 

Package info.bioinfweb.treegraph.document.io.newick Description

Contains classes implementing the import from and export to the Newick format.