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info.bioinfweb.treegraph.document.io.newick
Class CommentDataReader

java.lang.Object
  info.bioinfweb.treegraph.document.io.newick.CommentDataReader

public class CommentDataReader
extends Object

Reads hidden node data from a comment in a Newick string like it is generated by BEAST.

Since:

2.0.24

Author:

Ben Stöver

Field Summary

static char	ALLOCATION_SEPARATOR_SYMBOL
static char	ALLOCATION_SYMBOL
static char	FIELD_END_SYMBOL
static char	FIELD_START_SYMBOL
static char	INDEX_END_SYMBOL
static char	INDEX_START_SYMBOL
static char	START_SYMBOL
static char	VALUE_SEPARATOR_SYMBOL

Constructor Summary

CommentDataReader()

Method Summary

private int	findAllocationEnd(String text, int start)
private int	findFieldEnd(String text, int pos)
void	read(String comment, Node node)
private TextElementData	readTextElementData(String text)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

START_SYMBOL

public static final char START_SYMBOL

See Also:

Constant Field Values

ALLOCATION_SEPARATOR_SYMBOL

public static final char ALLOCATION_SEPARATOR_SYMBOL

See Also:

Constant Field Values

ALLOCATION_SYMBOL

public static final char ALLOCATION_SYMBOL

See Also:

Constant Field Values

FIELD_START_SYMBOL

public static final char FIELD_START_SYMBOL

See Also:

Constant Field Values

FIELD_END_SYMBOL

public static final char FIELD_END_SYMBOL

See Also:

Constant Field Values

VALUE_SEPARATOR_SYMBOL

public static final char VALUE_SEPARATOR_SYMBOL

See Also:

Constant Field Values

INDEX_START_SYMBOL

public static final char INDEX_START_SYMBOL

See Also:

Constant Field Values

INDEX_END_SYMBOL

public static final char INDEX_END_SYMBOL

See Also:

Constant Field Values

Constructor Detail

CommentDataReader

public CommentDataReader()

Method Detail

readTextElementData

private TextElementData readTextElementData(String text)

findFieldEnd

private int findFieldEnd(String text,
                         int pos)

findAllocationEnd

private int findAllocationEnd(String text,
                              int start)

read

public void read(String comment,
                 Node node)