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W

WARNING_PREFIX - Static variable in class info.bioinfweb.treegraph.cmd.CmdLoadLogger
 
WarningEdit - Interface in info.bioinfweb.treegraph.document.undo
 
wasDelimited() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken
 
WHITESPACE_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusCommand
 
WHITESPACE_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
 
whitespaceCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog
 
width - Variable in class info.bioinfweb.treegraph.document.format.DistanceDimension
 
width - Variable in class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
 
width - Variable in class info.bioinfweb.treegraph.document.format.operate.LabelWidthOperator
 
width - Variable in class info.bioinfweb.treegraph.document.format.operate.LineWidthOperator
 
width - Variable in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
 
width - Variable in class info.bioinfweb.treegraph.document.position.PositionData
 
WIDTH_OPTION - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator
 
widthInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
 
widthLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
 
widthTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
 
WIKI_URL - Static variable in class info.bioinfweb.treegraph.Main
 
wikiHelp - Variable in class info.bioinfweb.treegraph.Main
 
WINDOW_MENU_ITEMS_COUNT - Static variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
 
windowListener - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
 
windowMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
 
wordsOnly() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog
 
wordsOnlyCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
 
wordsOnlyCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog
 
write(Document, File) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
 
write(Document, File, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.AbstractDocumentWriter
 
write(Document, OutputStream) - Method in interface info.bioinfweb.treegraph.document.io.DocumentWriter
 
write(Document, File) - Method in interface info.bioinfweb.treegraph.document.io.DocumentWriter
 
write(Document, OutputStream, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in interface info.bioinfweb.treegraph.document.io.DocumentWriter
 
write(Document, File, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in interface info.bioinfweb.treegraph.document.io.DocumentWriter
 
write(Tree, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringWriter
 
write(Document, OutputStream, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickWriter
 
write(Document, OutputStream) - Method in class info.bioinfweb.treegraph.document.io.newick.NewickWriter
 
write(Document, OutputStream, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusWriter
 
write(Document, OutputStream) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusWriter
 
write(Document, OutputStream) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
write(Document, OutputStream, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
A call of this method is identical with calling XTGWriter.write(info.bioinfweb.treegraph.document.Document, java.io.OutputStream) because the XTG format supports writing any number of labels by default and there is no need to replace internal node names by label values.
write(Document, TreePainter, GraphicWriterHints, File) - Method in class info.bioinfweb.treegraph.graphics.export.AbstractGraphicWriter
 
write(Document, TreePainter, GraphicWriterHints, OutputStream) - Method in class info.bioinfweb.treegraph.graphics.export.FreeHEPWriter
 
write(Document, TreePainter, GraphicWriterHints, OutputStream) - Method in interface info.bioinfweb.treegraph.graphics.export.GraphicWriter
 
write(Document, TreePainter, GraphicWriterHints, File) - Method in interface info.bioinfweb.treegraph.graphics.export.GraphicWriter
 
write(Document, TreePainter, GraphicWriterHints, OutputStream) - Method in class info.bioinfweb.treegraph.graphics.export.SVGTranscodeWriter
Writes the given document to the given stream in the graphic format provided by the transcoder-class specified in the constructor.
writeAnchor(LegendFormats, int) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeCommand(OutputStreamWriter, String) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusWriter
 
writeData(OutputStream, Node, ExportNodeDataTableModel.Nodes) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
 
writeData(File, Node, ExportNodeDataTableModel.Nodes) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
 
writeDistanceDimension(String, DistanceDimension) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeGlobalFormats(GlobalFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeHiddenDataMap(HiddenDataMap) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeLabelBlock(Labels, boolean) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeLabelDimensions(GraphicalLabelFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeLegends(Legends) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeLineAttr(LineFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeMargin(String, Margin) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writer - Variable in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writer - Variable in class info.bioinfweb.treegraph.graphics.export.SingletonGraphicsFactory
 
writer - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
 
writeScaleBar(ScaleBar) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeScaleValue(String, ScaleValue) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeSubtree(Node, NodeBranchDataAdapter, NodeBranchDataAdapter, NodeBranchDataAdapter) - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringWriter
 
writeSubtree(Node) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeSubtree(Node) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
Writes the node data of the subtree under root as a text.
writeTextElementData(TextElementData) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeTextFormatsAttr(TextFormats) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
writeTextFormatsAttr(TextFormats, String) - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGWriter
 
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