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U

UndefinedIDException - Exception in info.bioinfweb.treegraph.document.undo.edit.calculatecolumn

This exception is thrown by the methods of CalculateColumnEdit if an undefined ID column is referenced in an expression.

UndefinedIDException() - Constructor for exception info.bioinfweb.treegraph.document.undo.edit.calculatecolumn.UndefinedIDException

UndefinedIDException(String) - Constructor for exception info.bioinfweb.treegraph.document.undo.edit.calculatecolumn.UndefinedIDException

UndefinedIDException(Token, int[][], String[]) - Constructor for exception info.bioinfweb.treegraph.document.undo.edit.calculatecolumn.UndefinedIDException

UNDERLINE - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats

UNDERLINE_DISTANCE_FACTOR - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

UNDERLINE_LINE_WIDTH_FACTOR - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

UNDERLINE_X_SHIFT_FACTOR - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter

underlineCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

underlineMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

undo() - Method in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.BranchLengthEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.ChangeLabelIDEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLabelEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLabelsEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLegendEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertSiblingEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertSubtreeEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteAllLabelsEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteLabelEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteLegendEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteRootEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteSiblingEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteSubtreeEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.PieChartLabelIDsEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveLabelEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveLegendEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveSubtreeEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.RenameDataIDEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.SeparateBranchEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.file.ApplyNameTableEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.file.ImportTableEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.format.AutoPositionLabelsEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.format.ColorsByNodeBranchDataEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.format.GlobalFormatsEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.format.ScaleBranchLengthsEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.format.ScaleDistanceValuesEdit

undo() - Method in class info.bioinfweb.treegraph.document.undo.NodeBranchDataEdit

UndoAction - Class in info.bioinfweb.treegraph.gui.actions.edit

UndoAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.UndoAction

undoManager - Variable in class info.bioinfweb.treegraph.document.Document

undoMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

UndoRedoToAction - Class in info.bioinfweb.treegraph.gui.actions.edit

Subclass of UndoToAction and RedoToAction which implements common behavior.

UndoRedoToAction(MainFrame, UndoableEdit) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.UndoRedoToAction

UndoToAction - Class in info.bioinfweb.treegraph.gui.actions.edit

Redoes all edit to the specified edit.

UndoToAction(MainFrame, UndoableEdit) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.UndoToAction

UNIQUE_NAME_CHARS - Static variable in class info.bioinfweb.treegraph.document.Tree

UNIQUE_NAME_LENGTH - Static variable in class info.bioinfweb.treegraph.document.Tree

UNIQUE_NODE_NAMES_VAR - Static variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit

uniqueName - Variable in class info.bioinfweb.treegraph.document.Node

UniqueNameAdapter - Class in info.bioinfweb.treegraph.document.nodebranchdata

UniqueNameAdapter() - Constructor for class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter

uniqueNameMap - Variable in class info.bioinfweb.treegraph.document.Tree

uniqueNameMap - Variable in class info.bioinfweb.treegraph.document.undo.edit.LegendPaster

uniqueNamesChanged - Variable in class info.bioinfweb.treegraph.document.undo.edit.LegendPaster

uniqueNamesLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog

unit - Variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler

UNIT_MILLIMETERS - Static variable in class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput

UNIT_MILLIMETERS - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog

UNIT_MM - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator

UNIT_PIXELS - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog

UNIT_POINTS - Static variable in class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput

UNIT_POINTS - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog

UNIT_PPI - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator

UNIT_PPI - Static variable in class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput

UNIT_PPM - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator

UNIT_PPMM - Static variable in class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput

UNIT_PT - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator

UNIT_PX - Static variable in class info.bioinfweb.treegraph.cmd.ImageGenerator

UNIT_SCALE - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput

unitComboBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog

unitsToMillimeters(float, float) - Static method in class info.bioinfweb.treegraph.document.format.ScaleValue

unitsToPixels(float, float, float) - Static method in class info.bioinfweb.treegraph.document.format.ScaleValue

unitsToPoints(float, float) - Static method in class info.bioinfweb.treegraph.document.format.ScaleValue

UnknownIcon - Class in info.bioinfweb.treegraph.graphics.positionpaint.labelicons

This icon shall be displayed if an unknown icon ID was specified (e.g. in a document created with a newer version of TreeGraph 2).

UnknownIcon() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.UnknownIcon

unregisterPositioner(PositionPaintType) - Method in class info.bioinfweb.treegraph.document.Document

UNROOTED_COMMAND - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

upButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog

updateElementSet() - Method in class info.bioinfweb.treegraph.document.Tree

updateExample() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel

updateFrame() - Method in class info.bioinfweb.treegraph.document.Document

updateMenues() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

updatePieChartLabels(String, String, Node) - Static method in class info.bioinfweb.treegraph.document.IDManager

Updates the renamed ID if it is referenced by pie chart label in the subtree under root.

updatePreview() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog

updateWindowMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame

upperBorder - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteOutsideIntervalEdit

upperInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog

upperToolBar - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel

upRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

USED_ROWS - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog