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G

g - Variable in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
generalEditorPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
generalPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
generalScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
generate(CommandLineReader) - Static method in class info.bioinfweb.treegraph.cmd.ImageGenerator
generatePattern(String, boolean, boolean) - Static method in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit
get(Object) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
get(int) - Method in class info.bioinfweb.treegraph.document.io.nexus.TranslTable
get(String) - Method in class info.bioinfweb.treegraph.document.io.nexus.TranslTable
get(int) - Method in class info.bioinfweb.treegraph.document.LabelLine
get(boolean, int, int) - Method in class info.bioinfweb.treegraph.document.Labels: Returns the label at the specified position
get(String) - Method in class info.bioinfweb.treegraph.document.Labels
get(int) - Method in class info.bioinfweb.treegraph.document.Legends
get(String) - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterHints
get(String) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.LabelIconMap
get(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
GET_VALUE_FUNC - Static variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
getAbove() - Method in class info.bioinfweb.treegraph.document.Label
getAbove(boolean, int, int) - Method in class info.bioinfweb.treegraph.document.Labels
getAboveBelowGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
getAboveBelowPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel: This method initializes labelAboveBelowPanel
getAboveRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel: This method initializes aboveRadioButton
getActionManagement() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
getActionManagement() - Method in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel
getActiveTreeFrame() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: Returns the currently avctive Frame where a tree is displayed.
getAdapter() - Method in class info.bioinfweb.treegraph.document.undo.edit.SetColumnTypeEdit
getAdapter(int) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getAdapterComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes adapterComboBox
getAdapterComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes nodeDataComboBox
getAddButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog: This method initializes addButton
getAddButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes addButton
getAdditionalCount() - Method in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.NodeInfo
getAfferentBranch() - Method in class info.bioinfweb.treegraph.document.Node
getAlignGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
getAlignLegendsToSubtree() - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats
getAlignment() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
getAlignmentPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes anchorPanel
getAlignToSubtreeCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog: This method initializes alignLegendsToSubtreeCheckBox
getAllElementsOfType(Class<T>) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection: Returns all selected elements of the specified type.
getAllFilters() - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
getAnchor(int) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getAnchorName(int) - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getApachePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes apachePanel
getApacheScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes apacheScrollPane
getApacheTextArea() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes apacheTextArea
getAssignImportColumnsDialog() - Method in class info.bioinfweb.treegraph.gui.actions.file.ImportTableAction
getAttributeMap() - Method in class info.bioinfweb.treegraph.document.Node: The attribute map can store data that is specific to special tasks like ladderizing or tree merging.
getBackgroundColor() - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats
getBeginningRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes beginningRadioButton
getBelow() - Method in class info.bioinfweb.treegraph.document.Label
getBelow(boolean, int, int) - Method in class info.bioinfweb.treegraph.document.Labels
getBelowRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel: This method initializes belowRadioButton
getBoldCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes boldCheckBox
getBoolean(String, boolean) - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterHints
getBothRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes bothRadioButton
getBottom() - Method in class info.bioinfweb.treegraph.document.format.Margin
getBottom() - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
getBottomInMillimeters() - Method in class info.bioinfweb.treegraph.document.position.PositionData
getBottomInPixels(float) - Method in class info.bioinfweb.treegraph.document.position.PositionData
getBraceRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes braceRadioButton
getBracketRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes bracketRadioButton
getBranchDataRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes branchDataRadioButton
getBranchLengthCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog: This method initializes branchLengthCheckBox
getBranchLengthInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
getBranchLengthScale() - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats
getBranchLengthScale() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput
getBranchLengthsDataInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
getBranchLengthsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog: This method initializes branchLengthsPanel
getBranchLengthsRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes branchLengthsRadioButton
getButtonPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes buttonPanel
getButtonsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewGraphicalLabelsDialog
getButtonsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog: This method initializes buttonsPanel
getCaseSensitiveCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes caseSensitiveCheckBox
getCaseSensitiveCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes caseSensitiveCheckBox
getCaseSensitiveCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog: This method initializes caseSensitiveCheckBox
getChangeUndefinedCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog: This method initializes hCheckBox
getChangeUndefinedCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog: This method initializes changeUndefinedCheckBox
getChildren() - Method in class info.bioinfweb.treegraph.document.Node
getClearButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes clearButton
getClipboard() - Method in class info.bioinfweb.treegraph.Main
getCloseButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes closeButton
getCloseButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog: This method initializes closeButton
getCmdProcessor() - Method in class info.bioinfweb.treegraph.Main
getColor(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.color.BranchLineColorAdapter
getColor(Node) - Method in interface info.bioinfweb.treegraph.document.format.adapters.color.ColorAdapter
getColor(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.color.LabelLineColorAdapter
getColor(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.color.LabelTextColorAdapter
getColor(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.color.NodeLineColorAdapter
getColor(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.color.NodeTextColorAdapter
getColor() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor.PieColorListEntry
getColorArray() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel
getColorChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel: This method initializes lineColorChooser
getColorChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
getColorList() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes colorList
getColorListEntry(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel
getColorListModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel
getColorListScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes colorListScrollPane
getColorPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog: This method initializes colorPanel
getColorPreviewPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog: This method initializes colorPreviewPanel
getColumnClass(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
getColumnClass(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
getColumnClass(int) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getColumnCount() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
getColumnCount() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
getColumnCount() - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getColumnInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog
getColumnName(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
getColumnName(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
getColumnName(int) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getColumnPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog: This method initializes columnPanel
getComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.DecimalUnitInput
getComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NewNodeBranchDataInput
getComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NodeBranchDataInput
getCommandGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
getCommandPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes commandPanel
getComment() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken: Returns the comment which was located behind this element in the Newick string (if there was any).
getCompressionMethodComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TIFFPrefPanel: This method initializes compressionMethodComboBox
getConstantWidthCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel: This method initializes constantWidthCheckBox
getContentsTabbedPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes contentsTabbedPane
getContentType() - Method in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard
getCopyPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog: This method initializes copyPanel
getCornerRadius() - Method in interface info.bioinfweb.treegraph.document.format.CornerRadiusFormats
getCornerRadius() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getCornerRadius() - Method in class info.bioinfweb.treegraph.document.format.NodeFormats: The line wich is dasplayed for an node can be rounded at ist top and bottom end The inner radius (without the line width) of the quater of a circle at the ends of this line is specified by the corner radius.
getCurrentValue(NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit: Returns the value of the specified column in the current line (specified by CalculateColumnEdit.position).
getData() - Method in class info.bioinfweb.treegraph.document.AbstractTextElement
getData(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenDataAdapter
getData(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NodeNameAdapter
getData(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter
getData(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextLabelAdapter
getData() - Method in interface info.bioinfweb.treegraph.document.TextElement: Returns the data associated with this text element.
getData() - Method in class info.bioinfweb.treegraph.document.TextLabel
getDataByID(Node, String) - Static method in class info.bioinfweb.treegraph.document.IDManager: Returns the text element data specified by the given ID which is linked to this node (either from a text label, hidden node data or hidden branch data).
getDataElement(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.AbstractIDElementAdapter
getDataElement(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter
getDataElement(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenBranchDataAdapter
getDataElement(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenNodeDataAdapter
getDataElement(Node) - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter: This method should return the tree element which contains the data which is edited with the implementation of the respective adapter.
getDataElement(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NodeNameAdapter
getDataElement(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextLabelAdapter
getDataElement(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter
getDataMap(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenBranchDataAdapter
getDataMap(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenDataAdapter
getDataMap(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenNodeDataAdapter
getDecimal(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter
getDecimal(Node) - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter
getDecimal(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter
getDecimal(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter
getDecimal() - Method in class info.bioinfweb.treegraph.document.TextElementData: Return the stored decimal value or Double.NaN is no decimal is stored.
getDecimalCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog: This method initializes decimalCheckBox
getDecimalFormat() - Method in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
getDecimalFormat() - Method in interface info.bioinfweb.treegraph.document.format.TextFormats
getDecimalFormat() - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats
getDecimalFormat(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.HiddenDataAdapter
getDecimalFormat(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.NodeNameAdapter
getDecimalFormat(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter
getDecimalFormat(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextLabelAdapter
getDecimalFormat() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
getDecimalFormatterFactory() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
getDecimalInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog
getDecRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes decRadioButton
getDefaultExtension() - Method in interface info.bioinfweb.treegraph.document.io.DocumentFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.document.io.SupportedFormatsFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.document.io.tgf.TGFFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.graphics.export.png.PNGFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.graphics.export.svg.SVGFilter
getDefaultExtension() - Method in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter
getDefaultID() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.LabelIconMap
getDefaultType() - Static method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
getDescent() - Method in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
getDescent() - Method in interface info.bioinfweb.treegraph.document.format.TextFormats
getDescent() - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats
getDescription() - Method in interface info.bioinfweb.treegraph.document.io.DocumentFilter
getDescription() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickFilter
getDescription() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusFilter
getDescription() - Method in class info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLFilter
getDescription() - Method in class info.bioinfweb.treegraph.document.io.SupportedFormatsFilter
getDescription() - Method in class info.bioinfweb.treegraph.document.io.tgf.TGFFilter
getDescription() - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGFilter
getDescription() - Method in class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter
getDescription() - Method in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter
getDescription() - Method in class info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter
getDescription() - Method in class info.bioinfweb.treegraph.graphics.export.png.PNGFilter
getDescription() - Method in class info.bioinfweb.treegraph.graphics.export.svg.SVGFilter
getDescription() - Method in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter
getDesktopPane() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes desktopPane
getDestAdapter() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
getDestInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
getDialog() - Method in class info.bioinfweb.treegraph.gui.actions.EditDialogAction
getDialog() - Method in class info.bioinfweb.treegraph.gui.actions.help.AboutAction
getDifAbove() - Method in class info.bioinfweb.treegraph.document.position.NodePositionData
getDifBelow() - Method in class info.bioinfweb.treegraph.document.position.NodePositionData
getDimensionPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes dimensionPanel
getDimensionsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes widthPanel
getDimensionsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes pngPanel
getDirectionPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes directionPanel
getDistance(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.AbstractDistanceValueAdapter
getDistance(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.AbstractLabelDistanceAdapter: Returns the distance value of the label with the specified ID in millimeters.
getDistance(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.AbstractLegendAdapter: This method always returns Float.NaN.
getDistance(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.BranchLineWidthAdapter
getDistance(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.BranchMinLengthAdapter
getDistance(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.BranchSpaceAboveAdapter
getDistance(Node) - Method in interface info.bioinfweb.treegraph.document.format.adapters.distance.DistanceAdapter: Returns the distance value in millimeters
getDistance(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.NodeLineWidthAdapter
getDistance(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.NodeTextHeightAdapter
getDistancesPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog: This method initializes distancesPanel
getDistanceValue(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.AbstractDistanceValueAdapter
getDistanceValue(LabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.AbstractIconLabelDistanceAdapter
getDistanceValue(LabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.AbstractLabelDistanceAdapter
getDistanceValue(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.AbstractLegendAdapter
getDistanceValue(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.BranchSpaceBelowAdapter
getDistanceValue(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.CornerRadiusAdapter
getDistanceValue(LabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LabelMarginBottomAdapter
getDistanceValue(LabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LabelMarginLeftAdapter
getDistanceValue(LabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LabelMarginRightAdapter
getDistanceValue(LabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LabelMarginTopAdapter
getDistanceValue(LabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LabelTextHeightAdapter
getDistanceValue(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LeafMarginBottomAdapter
getDistanceValue(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LeafMarginLeftAdapter
getDistanceValue(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LeafMarginRightAdapter
getDistanceValue(Node) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LeafMarginTopAdapter
getDistanceValue(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LegendLineWidthAdapter
getDistanceValue(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LegendMarginBottomAdapter
getDistanceValue(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LegendMarginLeftAdapter
getDistanceValue(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LegendMarginRightAdapter
getDistanceValue(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LegendMarginTopAdapter
getDistanceValue(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LegendSpacingAdapter
getDistanceValue(LegendFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.LegendTextHeightAdapter
getDocument() - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
getDocument() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
getDocument() - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getDocument() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
getDocument() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel: Returns the currently associated document.
getDocumentMargin() - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats
getDocumentPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
getDocumentRect() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
getDocumentSplitPane() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame: This method initializes documentSplitPane
getDownButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes downButton
getDownRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes downRadioButton
getDownwards() - Method in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.NodeInfo
getEditMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes editMenu
getElementAt(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelIconComboBoxModel
getElementAt(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.MessagesListModel
getElementAt(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RecentlyUsedExpressionsListModel
getElementAt(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NodeDataComboBoxModel
getElementAt(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorAdapterListModel
getElementAt(int) - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceAdapterListModel
getElementByPosition(MouseEvent) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener
getElementsInSubtree(Node, boolean, Class<? extends PaintableElement>, T[]) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer: Returns an array of tree elements in the subtree under root
getElementsInSubtree(Node, boolean, Class<T>) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer: Returns an array of tree elements in the subtree under root Calling this method is equivalent to getElementsInSubtree(root, leafsOnly, elementClass, (T[])Array.newInstance(elementClass, 0)).
getElementsOnNode(Node, Class<? extends PaintableElement>, T[]) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer: Returns an array of tree elements linked to the specified node.
getElementsOnNode(Node, Class<T>) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer: Returns an array of tree elements linked to the specified node.
getEndRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes endRadioButton
getError() - Method in exception info.bioinfweb.treegraph.document.io.nexus.NexusException
getErrorReporter() - Method in class info.bioinfweb.treegraph.Main
getErrors() - Method in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit: Returns a description of the errors that occured during the last call of CalculateColumnEdit.redo() or CalculateColumnEdit.evaluate().
getExamplePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel: This method initializes examplePanel
getExpressionPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog: This method initializes expressionPanel
getExpressionTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog: This method initializes expressionTextField
getFileButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes fileButton
getFileChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes fileChooser
getFileChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes fileChooser
getFileChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
getFileChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes fileChooser.
getFileChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog: This method initializes fileChooser
getFileChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog
getFileChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
getFileChooser() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog: This method initializes fileChooser
getFileChooserPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes fileChooserPanel
getFileChooserPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes fileChooserPanel
getFileChooserPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes fileChooserPanel
getFileChooserPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog: This method initializes fileChooserPanel
getFileMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes fileMenu
getFileName() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RecentlyUsedExpressionsListModel
getFilePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes filePanel
getFilePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog: This method initializes filePanel
getFileTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes fileTextField
getFilter() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickFactory
getFilter() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusFactory
getFilter() - Method in class info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLFactory
getFilter(ReadWriteFormat) - Method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
getFilter() - Method in interface info.bioinfweb.treegraph.document.io.SingleReadWriteFactory
getFilter() - Method in class info.bioinfweb.treegraph.document.io.tgf.TGFFactory
getFilter() - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGFactory
getFilter() - Method in interface info.bioinfweb.treegraph.graphics.export.GraphicsFactory
getFilter(GraphicFormat) - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
getFilter() - Method in class info.bioinfweb.treegraph.graphics.export.SingletonGraphicsFactory
getFindTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes findTextField
getFirstElementOfType(Class<T>) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection: Returns the first selected element of the specified type.
getFirstIconLabel(Node, String) - Static method in class info.bioinfweb.treegraph.document.IDManager: Returns the first icon label with the specified ID to be found in the subtree under root.
getFirstLabel(Node, String) - Static method in class info.bioinfweb.treegraph.document.IDManager: Returns the first label with the specified ID to be found in the subtree under root.
getFirstLeaf() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
getFirstTextLabel(Node, String) - Static method in class info.bioinfweb.treegraph.document.IDManager: Returns the first text label with the specified ID to be found in the subtree under root.
getFloat(String, float) - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterHints
getFont(float) - Method in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
getFont(float) - Method in interface info.bioinfweb.treegraph.document.format.TextFormats
getFont(float) - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats
getFontFamilyList() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes fontFamilyList
getFontFamilyPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes fontFamilyPanel
getFontFamilyTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes fontFamilyTextField
getFontHeightInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel
getFontHeightPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes fontHeightPanel
getFontName() - Method in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
getFontName() - Method in interface info.bioinfweb.treegraph.document.format.TextFormats
getFontName() - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats
getFontStylePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes fontStylePanel
getFormat() - Method in class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter
getFormat() - Method in class info.bioinfweb.treegraph.graphics.export.GraphicFilter
getFormat() - Method in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter
getFormat() - Method in class info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter
getFormat() - Method in class info.bioinfweb.treegraph.graphics.export.png.PNGFilter
getFormat() - Method in class info.bioinfweb.treegraph.graphics.export.svg.SVGFilter
getFormat() - Method in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter
getFormat() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: Returns the graphic format the user selected.
getFormatMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes formatMenu
getFormatPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel: This method initializes formatPanel
getFormats() - Method in class info.bioinfweb.treegraph.document.AbstractTextElement
getFormats() - Method in class info.bioinfweb.treegraph.document.Branch
getFormats() - Method in interface info.bioinfweb.treegraph.document.CornerRadiusElement
getFormats() - Method in class info.bioinfweb.treegraph.document.GraphicalLabel
getFormats() - Method in class info.bioinfweb.treegraph.document.IconLabel
getFormats() - Method in class info.bioinfweb.treegraph.document.Label
getFormats() - Method in class info.bioinfweb.treegraph.document.Legend
getFormats() - Method in interface info.bioinfweb.treegraph.document.LineElement
getFormats() - Method in class info.bioinfweb.treegraph.document.Node
getFormats() - Method in interface info.bioinfweb.treegraph.document.PaintableElement
getFormats() - Method in class info.bioinfweb.treegraph.document.PieChartLabel
getFormats() - Method in class info.bioinfweb.treegraph.document.ScaleBar
getFormats() - Method in interface info.bioinfweb.treegraph.document.TextElement
getFormats() - Method in class info.bioinfweb.treegraph.document.TextLabel
getFormats() - Method in class info.bioinfweb.treegraph.document.Tree
getFormatsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewIconLabelsDialog
getFormatsTabbedPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog: This method initializes formatsTabbedPane
getFormatsTabbedPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog: This method initializes formatsTabbedPane
getFormatTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel: This method initializes formatTextField
getFrame() - Method in class info.bioinfweb.treegraph.document.Document
getGeneralEditorPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes generalEditorPane
getGeneralPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes generalPanel
getGeneralScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes generalScrollPane
getGplEditorPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes gplTextArea
getGPLPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes gplPanel
getGplScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes gplScrollPane
getHasLengthCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog: This method initializes hasLengthCheckBox
getHeight() - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension
getHeight() - Method in class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
getHeight() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats: Defines the height of the long dashes (the height of the text below is not included.)
getHeight() - Method in class info.bioinfweb.treegraph.document.position.LegendPositionData
getHeight() - Method in class info.bioinfweb.treegraph.document.position.PositionData
getHeightAbove() - Method in class info.bioinfweb.treegraph.document.position.NodePositionData
getHeightBelow() - Method in class info.bioinfweb.treegraph.document.position.NodePositionData
getHeightInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel
getHeightTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes heightTextField
getHelpCode() - Method in class info.bioinfweb.treegraph.document.io.log.LoggerMessage
getHelpMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes helpMenu
getHelpTopic() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
getHiddenBranchDataIDs(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager: Searches for all the IDs of hidden data that is assigned to a branch present in the subtree under root.
getHiddenBranchDataIDVector(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager
getHiddenDataAdded() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader: Returns whether hidden data has been read from commetns in the newick string (e.g. from BEAST) during the last call of NewickStringReader.read(String, NodeBranchDataAdapter, NodeBranchDataAdapter, TranslTable, boolean) or one of its convenience methods.
getHiddenDataMap() - Method in class info.bioinfweb.treegraph.document.Branch
getHiddenDataMap() - Method in interface info.bioinfweb.treegraph.document.HiddenDataElement
getHiddenDataMap() - Method in class info.bioinfweb.treegraph.document.Node
getHiddenNodeDataIDs(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager: Searches for all the IDs of hidden data that is assigned to a node present in the subtree under root.
getHiddenNodeDataIDVector(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager
getHighestChild() - Method in class info.bioinfweb.treegraph.document.Node: Returns the upper most subnode of this node (e.g. needed for legend positioning).
getHints() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: Returns the graphic writer hints that have been specified by the user.
getHoldingBranch() - Method in class info.bioinfweb.treegraph.document.Label
getHoldingBranch() - Method in class info.bioinfweb.treegraph.document.Labels
getHorizontalRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes horizontalRadioButton
getIcon() - Method in class info.bioinfweb.treegraph.document.format.IconLabelFormats
getIconComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes iconComboBox
getIconComboBoxModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel
getIconDistanceValue(IconLabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.AbstractIconLabelDistanceAdapter
getIconDistanceValue(IconLabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.IconHeightAdapter
getIconDistanceValue(IconLabelFormats) - Method in class info.bioinfweb.treegraph.document.format.adapters.distance.IconWidthAdapter
getIconFilled() - Method in class info.bioinfweb.treegraph.document.format.IconLabelFormats
getIconFilledCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes iconFilledCheckBox
getIconHeight() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPreviewPanel
getIconHeight() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor.PieColorIcon
getIconLabelIDVector(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager
getIconPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes iconPanel
getIconPreviewPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes iconPreviewPanel
getIconWidth() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPreviewPanel
getIconWidth() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor.PieColorIcon
getID() - Method in class info.bioinfweb.treegraph.document.Label
getID() - Method in class info.bioinfweb.treegraph.document.nodebranchdata.AbstractIDElementAdapter
getID() - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.IDElementAdapter
getID() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor.PieColorListEntry
getID() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.AbstractLabelAdapter
getIDComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog: This method initializes idComboBox
getIDComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewGraphicalLabelsDialog: This method initializes idComboBox
getIDComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog: This method initializes idComboBox
getIDList() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog: This method initializes idList
getIdList() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog: This method initializes idList
getIDListModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog
getIdListScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog: This method initializes idListScrollPane
getIdNamePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes idNamePanel
getIDNameTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes idNameTextField
getIDPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog: This method initializes idPanel
getIDPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewGraphicalLabelsDialog: This method initializes idPanel
getIDPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog: This method initializes idPanel
getIDs(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager: Searches for all IDs (hidden data and label IDs) present in the subtree under root.
getIDValue(String) - Method in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit: Returns the value of the current line in the column specified the passed id present.
getIDVector(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager: Searches for all IDs present in the subtree under root.
getImageHeight() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: Return the height entered by the user in pixels or millimeters.
getImageWidth() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: Returns the width entered by the user in pixels or millimeters.
getImportButtonGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
getImportPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes importPanel
getImportPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog: This method initializes importPanel
getImportTableDialog() - Method in class info.bioinfweb.treegraph.gui.actions.file.ImportTableAction
getIncludeHiddenCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog: This method initializes includeHiddenCheckBox
getIncludeLeafs() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
getIncludeLeafsCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog: This method initializes includeLeafsCheckBox
getIncRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes incRadioButton
getIncreaseGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
getInheritToTerminalsCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog: This method initializes inheritToTerminalsCheckBox
getInheritToTerminalsCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog: This method initializes inheritToTerminalsCheckBox
getInitialFile() - Method in class info.bioinfweb.treegraph.cmd.CmdProcessor
getInMillimeters() - Method in class info.bioinfweb.treegraph.document.format.DistanceValue
getInMillimeters(float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue
getInPixels(float) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue
getInPixels(float, float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue
getInPoints() - Method in class info.bioinfweb.treegraph.document.format.DistanceValue: Returns the value in DTP-Points (1 pt = 0.3527777 mm).
getInPoints(float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue
getInputPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog: This method initializes InputPanel
getInstance() - Static method in class info.bioinfweb.treegraph.cmd.CmdLoadLogger
getInstance() - Static method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
getInstance() - Static method in class info.bioinfweb.treegraph.document.PieColorManager
getInstance() - Static method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
getInstance() - Static method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.LabelIconMap
getInstance() - Static method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPainter
getInstance() - Static method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramPositioner
getInstance() - Static method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
getInstance() - Static method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPainter
getInstance() - Static method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
getInstance() - Static method in class info.bioinfweb.treegraph.gui.CurrentDirectoryModel
getInstance() - Static method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.PreferencesPanelFactory
getInstance() - Static method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog: Returns the singleton instance of this class.
getInstance() - Static method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
getInstance() - Static method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
getInstance() - Static method in class info.bioinfweb.treegraph.Main
getInstanceWithBranch() - Static method in class info.bioinfweb.treegraph.document.Node
getInternalFrameByFile(File) - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
getInternalFrameListener() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
getInternalInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
getInternalNodesPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog: This method initializes internalNodesPanel
getInternalsRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes InternalsRadioButton
getIntervalLabelText(float) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarIntervalKeyListener
getIntervalPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes decimalPanel
getIntervalPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog: This method initializes intervalPanel
getInUnits(float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue
getIsSubedit() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit
getItalicCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes italicCheckBox
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewIconLabelsDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.NewickExceptionDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ScaleDistanceValuesDialog: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup: This method initializes jContentPane
getJContentPane() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame: This method initializes jContentPane
getLabel() - Method in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard: Returns a deep copy of the label in the clipboard.
getLabelIDPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog: This method initializes labelIDPanel
getLabelIDs(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager: Searches for all label IDs present in the subtree under root.
getLabelIDVector(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager
getLabelingPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes labelingPanel
getLabelList() - Method in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard: Returns a deep copy of the label list in the clipboard.
getLabelNumbersPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel: This method initializes labelNumbersPanel
getLabelRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes labelRadioButton
getLabels() - Method in class info.bioinfweb.treegraph.document.Branch
getLabels() - Method in class info.bioinfweb.treegraph.document.Label
getLabelsToLeftCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog: This method initializes labelsToLeftCheckBox
getLabelsWithID(Node, String) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer
getLabelsWithIDInBlock(Vector<Label>, Labels, boolean, String) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer
getLeafField(Node) - Method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
getLeafIndex(TextElementData) - Method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
getLeafInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
getLeafMargin() - Method in class info.bioinfweb.treegraph.document.format.NodeFormats
getLeafNodesBetween(Node, Node) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer
getLeafsRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes LeafsRadioButton
getLeft() - Method in class info.bioinfweb.treegraph.document.format.Margin
getLeft() - Method in class info.bioinfweb.treegraph.document.position.LegendPositionData
getLeft() - Method in class info.bioinfweb.treegraph.document.position.PositionData
getLeft() - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
getLeftRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes leftRadioButton
getLegend() - Method in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard: Returns a deep copy of the legend in the clipboard.
getLegendBottom(LegendFormats) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
getLegendNumbersPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes legendNumbersPanel
getLegendOrientationPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes legendOrientationPanel
getLegendPositionTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes positionTextField
getLegends() - Method in class info.bioinfweb.treegraph.document.Legend
getLegends() - Method in class info.bioinfweb.treegraph.document.Tree
getLegends() - Method in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesBackup
getLegendsInSubtree(Tree, Node) - Static method in class info.bioinfweb.treegraph.document.TreeSerializer: Returns an array of all legends which are completely anchored inside the subtree under root.
getLegendsReanchored() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveSubtreeEdit
getLegendsReanchored() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
getLegendsRemoved() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveSubtreeEdit
getLegendsRemoved() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
getLegendsSave() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
getLegendStartX(LegendFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
getLegendStyle() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getLegendStylePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes legendStylePanel
getLegendTop(LegendFormats) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
getLength() - Method in class info.bioinfweb.treegraph.document.Branch
getLength() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken
getLengthInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog: Returns the length input and creates it if necessary.
getLengthPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog: This method initializes lengthPanel
getLineColor() - Method in class info.bioinfweb.treegraph.document.format.BranchFormats
getLineColor(Document) - Static method in class info.bioinfweb.treegraph.document.format.FormatUtils: Returns the default line color or its inversion depending in the background color of the specified document.
getLineColor() - Method in class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
getLineColor() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getLineColor() - Method in interface info.bioinfweb.treegraph.document.format.LineFormats
getLineColor() - Method in class info.bioinfweb.treegraph.document.format.NodeFormats
getLineColor() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
getLineColorPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel: This method initializes lineColorPanel
getLineFormats() - Method in class info.bioinfweb.treegraph.document.Branch
getLineIndex() - Method in class info.bioinfweb.treegraph.document.Label: Returns the line index of the label or -1 if it is not linked to a Labels-object.
getLineIndex(Label) - Method in class info.bioinfweb.treegraph.document.Labels
getLineIndex(boolean, Label) - Method in class info.bioinfweb.treegraph.document.Labels: Returns the index of the specified label in its line.
getLineIndex(boolean, int, Label) - Method in class info.bioinfweb.treegraph.document.Labels: Returns the index of the specified label in its line.
getLineNo() - Method in class info.bioinfweb.treegraph.document.Label: Returns the line number of this label or -1 if it is not linked to a Labels-object.
getLineNo(boolean, Label) - Method in class info.bioinfweb.treegraph.document.Labels: Returns the line number this label is located in.
getLineNoTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel: This method initializes lineNoTextField
getLineNumber() - Method in class info.bioinfweb.treegraph.document.format.LabelFormats: The number of the line in which this label shall be displayed.
getLinePos() - Method in class info.bioinfweb.treegraph.document.position.LegendPositionData: The position if the icon (for labels) or the bracket (for legends).
getLinePosition() - Method in class info.bioinfweb.treegraph.document.format.LabelFormats: If more than one element is located in the same line the line position is used to determine the order of the elements.
getLinePosTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel: This method initializes linePosTextField
getLines(boolean) - Method in class info.bioinfweb.treegraph.document.Labels
getLineWidth() - Method in class info.bioinfweb.treegraph.document.format.BranchFormats
getLineWidth() - Method in class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
getLineWidth() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getLineWidth() - Method in interface info.bioinfweb.treegraph.document.format.LineFormats
getLineWidth() - Method in class info.bioinfweb.treegraph.document.format.NodeFormats
getLineWidth() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
getLinkedNode() - Method in class info.bioinfweb.treegraph.document.Branch
getLinkedNode() - Method in class info.bioinfweb.treegraph.document.Label
getLinkedNode() - Method in class info.bioinfweb.treegraph.document.Node
getLinkedNode(PaintableElement) - Static method in class info.bioinfweb.treegraph.document.Tree: Returns the linked node to the given element.
getLinkedNode() - Method in interface info.bioinfweb.treegraph.document.TreeElement
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.piecolor.PieColorCellRenderer
getListIDComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog: This method initializes idComboBox
getLocale() - Method in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
getLocale() - Method in interface info.bioinfweb.treegraph.document.format.TextFormats: Return the local object used in the decimal formats.
getLocale() - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats
getLocaleComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel: This method initializes localeComboBox
getLocaleValue() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
getLongInterval() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats: The long interval specifies how often the scale bar is labeles with a value.
getLongIntervalKeyListener() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
getLowerBorder() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog
getLowerToolBar() - Method in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel: This method initializes editFormatToolBar
getLowestChild() - Method in class info.bioinfweb.treegraph.document.Node: Returns the lowest subnode of this node (e.g. needed for legend positioning).
getMainFrame() - Method in class info.bioinfweb.treegraph.gui.actions.DocumentAction
getMainMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes mainMenu
getMargin() - Method in class info.bioinfweb.treegraph.document.format.LabelFormats
getMargin() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getMarginInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel
getMarginInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
getMarginInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.NodeMarginPanel
getMarginPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel: This method initializes marginPanel
getMarginPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes marginPanel
getMarginPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.NodeMarginPanel: This method initializes marginPanel
getMaxColor() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorPreviewPanel
getMaxColorButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog: This method initializes maxColorButton
getMaxWidthInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog
getMessage() - Method in class info.bioinfweb.treegraph.document.io.log.LoggerMessage
getMessageList() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog: This method initializes messageList
getMessageListModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog: Returns the model of LoadLoggerDialog.getMessageList().
getMessagePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.NewickExceptionDialog: This method initializes messagePanel
getMessagesScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog: This method initializes messagesScrollPane
getMinColor() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorPreviewPanel
getMinColorButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog: This method initializes minColorButton
getMinimumSize() - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
getMinLength() - Method in class info.bioinfweb.treegraph.document.format.BranchFormats
getMinMaxPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog: This method initializes minMaxPanel
getMinSpaceAbove() - Method in class info.bioinfweb.treegraph.document.format.BranchFormats
getMinSpaceBelow() - Method in class info.bioinfweb.treegraph.document.format.BranchFormats
getMinTreeDistance() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getMinWidthInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog
getModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.DataIDComboBox
getModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NodeBranchDataInput
getName() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusCommand
getName(int) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument
getName(PositionPaintType) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
getNameManager() - Method in class info.bioinfweb.treegraph.Main
getNegativeExampleLabel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
getNewMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes newMenu
getNewNameTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog: This method initializes newNameTextField
getNext() - Method in class info.bioinfweb.treegraph.document.Label
getNext(List<LabelLine>, int, int, int) - Method in class info.bioinfweb.treegraph.document.Labels
getNext() - Method in class info.bioinfweb.treegraph.document.Node
getNextLeaf() - Method in class info.bioinfweb.treegraph.document.Node
getNode() - Method in class info.bioinfweb.treegraph.document.NodeLadderizeComparable
getNode() - Method in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.NodeInfo
getNodeBranchDataMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes nodeBranchDataMenu
getNodeByUniqueName(String) - Method in class info.bioinfweb.treegraph.document.Tree: Searches for a node with the given unique name in this tree.
getNodeDataButtonsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes nodeDataButtonsPanel
getNodeDataInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
getNodeDataPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes nodeDataPanel
getNodeDataPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes nodeDataPanel
getNodeDataPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog: This method initializes nodeDataPanel
getNodeDataRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes nodeDataRadioButton
getNodeNamesDataInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
getNodeNamesRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes nodeNamesRadioButton
getNodesGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
getNodesPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes NodesPanel
getNoneRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes noneRadioButton
getNumberOfParameters() - Method in class info.bioinfweb.treegraph.document.undo.edit.calculatecolumn.IDFunction
getOpenRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes openRadioButton
getOrientation() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getOrientation() - Method in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel
getOrientation() - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
getOrientationGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
getOtherLineFormatsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel: This method initializes otherLineFormatsPanel
getOuterPreferencesPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes preferencesPanel
getOwner() - Method in class info.bioinfweb.treegraph.document.format.LabelFormats
getOwner() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats
getPaintDimension(PositionPaintType) - Method in class info.bioinfweb.treegraph.document.Tree: Returns the stored paint dimension (the size of the document) for the given painter ID.
getPainter() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramFactory
getPainter(PositionPaintType) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
getPainter() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramFactory
getPainter() - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.SinglePositionPaintFactory
getPainterType() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
getPaintStart() - Method in class info.bioinfweb.treegraph.document.Tree
getPanel(GraphicFormat) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.PreferencesPanelFactory
getParent() - Method in class info.bioinfweb.treegraph.document.Node
getParseNumericValuesCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes parseNumericValuesCheckBox
getPieChartAngles() - Method in class info.bioinfweb.treegraph.document.PieChartLabel: Returns an array with angles the single value would make up in a resulting pie chart in degrees.
getPieChartPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes pieChartPanel
getPieColor(int) - Method in class info.bioinfweb.treegraph.document.format.PieChartLabelFormats: Returns the stored color with the specified index.
getPixelsPerMillimeter() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
getPixelsPerMillimeter() - Method in class info.bioinfweb.treegraph.gui.dialogs.ResolutionInput
getPopupMenu(PaintableElement) - Method in class info.bioinfweb.treegraph.gui.actions.ActionManagement
getPosBeforeLinePos(int) - Method in class info.bioinfweb.treegraph.document.LabelLine: Returns the index of the label at the given line position.
getPosition(PositionPaintType) - Method in class info.bioinfweb.treegraph.document.ConcretePaintableElement
getPosition() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats: The position of a legend defined in which order vertically overlapping legends are positioned.
getPosition() - Method in exception info.bioinfweb.treegraph.document.io.newick.NewickException: The position of the error in the newick string.
getPosition(PositionPaintType) - Method in class info.bioinfweb.treegraph.document.Legend
getPosition(PositionPaintType) - Method in class info.bioinfweb.treegraph.document.Node
getPosition(PositionPaintType) - Method in interface info.bioinfweb.treegraph.document.PaintableElement: Returns the stored DataPosition-object of an for an positioner- identifier.
getPosition(int) - Method in class info.bioinfweb.treegraph.document.TreePath: Returns the position in this path on the specified level.
getPositioner() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PhylogramFactory
getPositioner(PositionPaintType) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
getPositioner() - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramFactory
getPositioner() - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.SinglePositionPaintFactory
getPositionLabelsToLeft() - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats
getPositionPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes positionPanel
getPositiveExampleLabel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
getPredifinedTable() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel: This method initializes predifinedTable
getPreferredScrollableViewportSize() - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
getPreferredScrollableViewportSize() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.BranchLengthEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.ChangeLabelIDEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.CopyColumnEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.CutEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteColumnEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteOutsideIntervalEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteSubelementsEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLabelEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLabelsEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertLegendEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertSiblingEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.InsertSubtreeEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.LadderizeEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.MoveSubtreeEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteAllLabelsEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteLabelEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteLegendEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteRootEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteSiblingEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.PasteSubtreeEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.PieChartLabelIDsEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveLabelEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveLegendEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.RemoveSubtreeEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.RenameDataIDEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.ReplaceInNodeDataEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.RerootEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.RescaleNodeDataEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.SeparateBranchEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.SetColumnTypeEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.file.ApplyNameTableEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.file.ImportTableEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.AutoPositionLabelsEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.ColorsByNodeBranchDataEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.GlobalFormatsEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.ScaleBranchLengthsEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.ScaleDistanceValuesEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.ShowHideScaleBarEdit
getPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.format.ShowRootedEdit
getPreviewLabel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
getPreviewPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog: This method initializes previewPanel
getPreviewPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes previewPanel
getPreviewPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog: This method initializes previewPanel
getPreviewScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog: This method initializes previewScrollPane
getPreviewTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes previewTextField
getPrevious() - Method in class info.bioinfweb.treegraph.document.Label
getPrevious() - Method in class info.bioinfweb.treegraph.document.Node
getPreviousLeaf() - Method in class info.bioinfweb.treegraph.document.Node
getPrintRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes printRadioButton
getQualitySlider() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.JPEGPrefPanel: This method initializes qualitySlider
getReader() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickFactory
getReader() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusFactory
getReader() - Method in class info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLFactory
getReader(File) - Method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
getReader(ReadWriteFormat) - Method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
getReader() - Method in interface info.bioinfweb.treegraph.document.io.SingleReadWriteFactory
getReader() - Method in class info.bioinfweb.treegraph.document.io.tgf.TGFFactory
getReader() - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGFactory
getRecentlyUsedList() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog: This method initializes recentlyUsedList
getRecentlyUsedListModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog
getRecentlyUsedPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog: This method initializes recentlyUsedPanel
getRecentlyUsedScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog: This method initializes recentlyUsedScrollPane
getRedoMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes redoMenu
getRedoPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit
getRemoveButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog: This method initializes removeButton
getRemoveButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes removeButton
getRenameButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog: This method initializes renameButton
getReplaceButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog: This method initializes replaceButton
getReplaceButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes replaceButton
getReplacePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes replacePanel
getReplaceRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes replaceRadioButton
getReplaceTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes replaceTextField
getResourcePath(String) - Static method in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
getRight() - Method in class info.bioinfweb.treegraph.document.format.Margin
getRight() - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
getRightInMillimeters() - Method in class info.bioinfweb.treegraph.document.position.PositionData
getRightInPixels(float) - Method in class info.bioinfweb.treegraph.document.position.PositionData
getRightRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes leafsRadioButton
getRoundedInPixels(float) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue: Gives the uprounded value in pixels
getRoundedInPixels(float, float) - Method in class info.bioinfweb.treegraph.document.format.ScaleValue
getRow(Node) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getRowCount() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
getRowCount() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
getRowCount() - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getScaleBar() - Method in class info.bioinfweb.treegraph.document.Tree
getScaleInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ScaleDistanceValuesDialog
getScalePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ScaleDistanceValuesDialog: This method initializes rescalePanel
getScrollableBlockIncrement(Rectangle, int, int) - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
getScrollableBlockIncrement(Rectangle, int, int) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
getScrollableTracksViewportHeight() - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
getScrollableTracksViewportHeight() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
getScrollableTracksViewportWidth() - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
getScrollableTracksViewportWidth() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
getScrollableUnitIncrement(Rectangle, int, int) - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
getScrollableUnitIncrement(Rectangle, int, int) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
getSearchPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog: This method initializes searchPanel
getSearchTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog: This method initializes searchTextField
getSelctedIndex() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog
getSelectedAdapter() - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
getSelectedAdapter() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NewNodeBranchDataInput
getSelectedAdapter() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NodeBranchDataInput: Returns the currently selected adapter.
getSelectedAdapter() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame: Returns the selected adapter in the node/branch data table.
getSelectedFile() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: Returns the selected file with a valid extension.
getSelectedFile() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
getSelectedFile() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog: Override this method if you e.g. want to add a default extension.
getSelectedFile() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
getSelectedItem() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelIconComboBoxModel
getSelectedItem() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NodeDataComboBoxModel
getSelectedNode(TreeSelection) - Method in class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeAction: Returns the node that should be moved if the selection contains this node or its afferent branch as the first element.
getSelection() - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
getSelection() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
getSelectionPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog: This method initializes selectionPanel
getSelectMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes selectMenu
getSeparator() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
getSeparator() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel
getSeparatorPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes separatorPanel
getSeparatorPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog: This method initializes separatorPanel
getSeparatorTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel: This method initializes separatorTextField
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.CrossIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.EllipseIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.HexagonIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.OctagonIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.RectangleIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.RoundRectangleIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.ShapeLabelIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.StarIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TitedCrossIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TitedHexagonIcon
getShape(float, float, IconLabelFormats, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.TriangleIcon
getSharedInstance() - Static method in class info.bioinfweb.treegraph.document.io.newick.BranchLengthsScaler
getSharedInstance() - Static method in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader
getSharedInstance() - Static method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter
getSharedInstance() - Static method in class info.bioinfweb.treegraph.document.nodebranchdata.NodeNameAdapter
getSharedInstance() - Static method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter
getShowInternalLines() - Method in class info.bioinfweb.treegraph.document.format.PieChartLabelFormats
getShowInternalLinesCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes showInternalLinesCheckBox
getShowNullLines() - Method in class info.bioinfweb.treegraph.document.format.PieChartLabelFormats
getShowNullLinesCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel: This method initializes showNullLinesCheckBox
getShowRooted() - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats
getShowRootedCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog: This method initializes showRootedCheckBox
getShowScaleBar() - Method in class info.bioinfweb.treegraph.document.format.GlobalFormats
getShowScaleBarCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog: This method initializes showScaleBarCheckBox
getShowWarnings() - Method in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
getShowWarnings() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
getShowWarnings() - Method in interface info.bioinfweb.treegraph.document.undo.WarningEdit
getSize() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelIconComboBoxModel
getSize() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.MessagesListModel
getSize() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RecentlyUsedExpressionsListModel
getSize() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NodeDataComboBoxModel
getSize() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorAdapterListModel
getSize() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceAdapterListModel
getSlider() - Method in class info.bioinfweb.treegraph.gui.mainframe.tools.DistanceValuePopup: This method initializes slider
getSmallInterval() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats: The small interval speccifies the distance between the small dashes of the branch length scale bar in branch length units.
getSmallIntervalKeyListener() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
getSource() - Method in class info.bioinfweb.treegraph.document.DocumentChangeEvent
getSourceAfter() - Method in exception info.bioinfweb.treegraph.document.io.newick.NewickException: Returns a part of the newick source starting at the error position.
getSourceBefore() - Method in exception info.bioinfweb.treegraph.document.io.newick.NewickException: Returns a part of the newick source ending before the error position.
getSourceComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog: This method initializes sourceComboBox
getSourceComboBoxModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog
getSourceInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog: Creates the source input if necessary.
getSourcePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog: This method initializes sourcePanel
getSourcePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog: This method initializes sourcePanel
getSpacing() - Method in class info.bioinfweb.treegraph.document.format.LegendFormats: The legend spacing is the distance between the bracket and the text of a legend.
getSpacing() - Method in class info.bioinfweb.treegraph.document.position.LegendPositionData: The spacing between the icon or bracket and the text.
getSrcAdapter() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
getSrcInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
getStartPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes startPanel
getStoredValue() - Method in class info.bioinfweb.treegraph.document.format.ScaleValue: Returns the stored value in millimeters or in branch length units.
getString(String, String) - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterHints
getStringFormatterFactory() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
getStringRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel: This method initializes stringRadioButton
getStyleGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
getSubtree() - Method in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard: Returns a deep copy of the subtree in the clipboard.
getSubtreeLegends() - Method in class info.bioinfweb.treegraph.document.clipboard.TreeClipboard: Returns deep copies of the legends attached to the subtree in the clipboard.
getSupportValue(Node) - Method in class info.bioinfweb.treegraph.document.undo.file.AddSupportValuesEdit
getTable() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes table
getTable() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame: This method initializes table
getTableModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
getTableModel() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
getTableScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel: This method initializes tableScrollPane
getTableScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes tableScrollPane
getTableScrollPane() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame: This method initializes tableScrollPane
getTabRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TableSeparatorPanel: This method initializes tabRadioButton
getTabs() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
getTargetDataButtonGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
getTargetList() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog: This method initializes targetList
getTargetListModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ColorsByNodeBranchDataDialog
getTargetListModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.DistanceValuesByNodeBranchDataDialog
getTargetListModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.ScaleDistanceValuesDialog
getTargetListModel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog
getTargetNode() - Method in class info.bioinfweb.treegraph.document.Branch
getTargetPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog: This method initializes targetPanel
getTargetScrollPane() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog: This method initializes targetScrollPane
getTargetTypePanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes targetTypePanel
getTerminalDataInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
getTerminalsPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes terminalsPanel
getText() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken
getText(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter
getText(Node) - Method in interface info.bioinfweb.treegraph.document.nodebranchdata.NodeBranchDataAdapter
getText(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.TextElementDataAdapter
getText(Node) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.UniqueNameAdapter
getText() - Method in class info.bioinfweb.treegraph.document.TextElementData: Returns the stored string value or null is no string is stored.
getText() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog
getTextColor() - Method in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
getTextColor(Document) - Static method in class info.bioinfweb.treegraph.document.format.FormatUtils: Returns the default text color or its inversion depending in the background color of the specified document.
getTextColor() - Method in interface info.bioinfweb.treegraph.document.format.TextFormats
getTextColor() - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats
getTextElement() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
getTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput.NewNodeBranchDataInput
getTextHeight() - Method in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
getTextHeight() - Method in interface info.bioinfweb.treegraph.document.format.TextFormats
getTextHeight() - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats
getTextLabelIDs(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager
getTextLabelIDVector(Node) - Static method in class info.bioinfweb.treegraph.document.IDManager
getTextPos() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken
getTextPos() - Method in class info.bioinfweb.treegraph.document.position.LegendPositionData
getTextStyle() - Method in class info.bioinfweb.treegraph.document.format.ConcreteTextFormats
getTextStyle() - Method in interface info.bioinfweb.treegraph.document.format.TextFormats
getTextStyle() - Method in class info.bioinfweb.treegraph.document.format.TextLabelFormats
getTitleLabel() - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
getTokens() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusCommand
getToolBarPanel() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes toolBarPanel
getToolTipText(MouseEvent) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel: This method is overwritten to show the internal node names or label IDs as tooltip text.
getTop() - Method in class info.bioinfweb.treegraph.document.format.Margin
getTop() - Method in class info.bioinfweb.treegraph.document.position.LegendPositionData
getTop() - Method in class info.bioinfweb.treegraph.document.position.PositionData
getTop() - Method in class info.bioinfweb.treegraph.gui.dialogs.MarginInput
getTranslateInternalNodesCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog: This method initializes translateInternalNodesCheckBox
getTranslateInternalsCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog: This method initializes translateInternalsCheckBox
getTranslTable() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument
getTransparentCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.TransparentBgPrefPanel: This method initializes transparentCheckBox
getTree() - Method in class info.bioinfweb.treegraph.document.Document
getTree(int) - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusDocument
getTree() - Method in class info.bioinfweb.treegraph.document.Legends
getTreeComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog: This method initializes treeComboBox
getTreeDistance() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
getTreeElement(int, int) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getTreeScrollPane() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame: This method initializes scrollPane
getTreeViewInputListener() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame
getTreeViewPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.TreeSelectionDialog: This method initializes treeViewPanel
getTreeViewPanel() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeInternalFrame: This method initializes treeViewPanel
getTreeWidthRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes rightRadioButton
getType() - Method in class info.bioinfweb.treegraph.document.io.log.LoggerMessage
getType() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickToken
getType(TreePositioner) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
getType(TreePainter) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.PositionPaintFactory
getUnderlineCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel: This method initializes underlineCheckBox
getUndoManager() - Method in class info.bioinfweb.treegraph.document.Document
getUndoMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes undoMenu
getUndoPresentationName() - Method in class info.bioinfweb.treegraph.document.undo.DocumentEdit
getUniqueName() - Method in class info.bioinfweb.treegraph.document.Node: The unique name is used to identify nodes in the XML-file which are associated with legends.
getUnit() - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
getUnit() - Method in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRulerUnitField
getUnitComboBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes unitComboBox
getUnterminatedCommentException(int, String) - Static method in exception info.bioinfweb.treegraph.document.io.newick.NewickException
getUnterminatedNameException(int, String) - Static method in exception info.bioinfweb.treegraph.document.io.newick.NewickException
getUpButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog: This method initializes upButton
getUpperBorder() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog
getUpperToolBar() - Method in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel: This method initializes fileviewWindowToolBar
getUpRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel: This method initializes upRadioButton
getValue() - Method in class info.bioinfweb.treegraph.document.format.operate.AbstractMarginOperator
getValue(int) - Method in class info.bioinfweb.treegraph.document.PieChartLabel: Returns the value of the data column for the ID with the specified index.
getValue(String) - Method in class info.bioinfweb.treegraph.document.undo.edit.calculatecolumn.IDFunction
getValue(NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.document.undo.edit.calculatecolumn.IDFunction
getValue() - Method in class info.bioinfweb.treegraph.gui.dialogs.DistanceValueInput
getValue() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput
getValue(NodeBranchDataAdapter, Node) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
getValueAt(int, int) - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
getValueAt(int, int) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
getValueAt(int, int) - Method in class info.bioinfweb.treegraph.gui.treeframe.DocumentTableModel
getValueID(int) - Method in class info.bioinfweb.treegraph.document.PieChartLabel
getValueIsAdjusting() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
getValues() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
getValuesPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog: This method initializes valuesPanel
getValuesPanel() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog: This method initializes valuesPanel
getValueTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog: This method initializes textTextField
getVector(Node, boolean, boolean, boolean, boolean) - Static method in class info.bioinfweb.treegraph.document.IDManager: Returns a vector of IDs which is sorted alphabetically.
getVersion() - Method in class info.bioinfweb.treegraph.document.Document: Returns the version this document has been loaded from.
getViewMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes viewMenu
getWarningsMessages() - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
getWhitespaceCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog: This method initializes whitespaceCheckBox
getWidth() - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension
getWidth() - Method in class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
getWidth() - Method in class info.bioinfweb.treegraph.document.format.ScaleBarFormats
getWidth() - Method in class info.bioinfweb.treegraph.document.position.LegendPositionData
getWidth() - Method in class info.bioinfweb.treegraph.document.position.PositionData
getWidthInput() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPieChartLabelPanel
getWidthTextField() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog: This method initializes widthTextField
getWikiHelp() - Method in class info.bioinfweb.treegraph.Main
getWindowListener() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
getWindowMenu() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame: This method initializes windowMenu
getWordsOnlyCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog: This method initializes wordsOnlyCheckBox
getWordsOnlyCheckBox() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog: This method initializes wordsOnlyCheckBox
getWriter() - Method in class info.bioinfweb.treegraph.document.io.newick.NewickFactory
getWriter() - Method in class info.bioinfweb.treegraph.document.io.nexus.NexusFactory
getWriter() - Method in class info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLFactory
getWriter(ReadWriteFormat) - Method in class info.bioinfweb.treegraph.document.io.ReadWriteFactory
getWriter() - Method in interface info.bioinfweb.treegraph.document.io.SingleReadWriteFactory
getWriter() - Method in class info.bioinfweb.treegraph.document.io.tgf.TGFFactory
getWriter() - Method in class info.bioinfweb.treegraph.document.io.xtg.XTGFactory
getWriter() - Method in interface info.bioinfweb.treegraph.graphics.export.GraphicsFactory
getWriter(GraphicFormat) - Method in class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
getWriter() - Method in class info.bioinfweb.treegraph.graphics.export.SingletonGraphicsFactory
getZeroLeftRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes zeroLeftRadioButton
getZeroPosGroup() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
getZeroRightRadioButton() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel: This method initializes ueroRightRadioButton
getZoom(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.FitZoomToHeightAction
getZoom(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthAction
getZoom(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.FitZoomToWidthHeightAction
getZoom(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.SetUserZoomAction
getZoom(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.SetZoomAction
getZoom(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.SetZoomToOriginalAction
getZoom() - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeViewPanel
GlobalFormats - Class in info.bioinfweb.treegraph.document.format
GlobalFormats() - Constructor for class info.bioinfweb.treegraph.document.format.GlobalFormats
GlobalFormatsDialog - Class in info.bioinfweb.treegraph.gui.dialogs
GlobalFormatsDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
GlobalFormatsEdit - Class in info.bioinfweb.treegraph.document.undo.format
GlobalFormatsEdit(Document, GlobalFormats) - Constructor for class info.bioinfweb.treegraph.document.undo.format.GlobalFormatsEdit
gplEditorPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
gplPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
gplScrollPane - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog
GraphicalLabel - Class in info.bioinfweb.treegraph.document: Abstract precursor of all graphical labels which allows to independently access the graphical label formats.
GraphicalLabel(Labels) - Constructor for class info.bioinfweb.treegraph.document.GraphicalLabel
GraphicalLabelFormats - Class in info.bioinfweb.treegraph.document.format: All format classes for document elements which represent labels with line formats should inherit from this class.
GraphicalLabelFormats(Label, boolean, int, int) - Constructor for class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
GraphicalLabelFormats(Label) - Constructor for class info.bioinfweb.treegraph.document.format.GraphicalLabelFormats
GraphicFilter - Class in info.bioinfweb.treegraph.graphics.export
GraphicFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.GraphicFilter
GraphicFormat - Enum in info.bioinfweb.treegraph.graphics.export
GraphicFormat() - Constructor for enum info.bioinfweb.treegraph.graphics.export.GraphicFormat
GraphicsFactory - Interface in info.bioinfweb.treegraph.graphics.export
GraphicWriter - Interface in info.bioinfweb.treegraph.graphics.export
GraphicWriterFactory - Class in info.bioinfweb.treegraph.graphics.export
GraphicWriterFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.GraphicWriterFactory
GraphicWriterHints - Class in info.bioinfweb.treegraph.graphics.export
GraphicWriterHints() - Constructor for class info.bioinfweb.treegraph.graphics.export.GraphicWriterHints
greenFactor - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsByNodeBranchDataEdit

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