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TreeGraph 2
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O

OctagonIcon - Class in info.bioinfweb.treegraph.graphics.positionpaint.labelicons
 
OctagonIcon() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.OctagonIcon
 
oldAnchors - Variable in class info.bioinfweb.treegraph.document.undo.format.ReanchorLegendEdit
 
oldColors - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsByNodeBranchDataEdit
 
oldData - Variable in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit
 
oldFormats - Variable in class info.bioinfweb.treegraph.document.undo.format.AutoPositionLabelsEdit
 
oldFormats - Variable in class info.bioinfweb.treegraph.document.undo.format.GlobalFormatsEdit
 
oldIDs - Variable in class info.bioinfweb.treegraph.document.undo.edit.ChangeLabelIDEdit
 
oldIDs - Variable in class info.bioinfweb.treegraph.document.undo.edit.PieChartLabelIDsEdit
 
oldIDs - Variable in class info.bioinfweb.treegraph.document.undo.edit.RenameDataIDEdit
 
oldLegendFormats - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesBackup
 
oldLength - Variable in class info.bioinfweb.treegraph.document.undo.edit.BranchLengthEdit
 
oldNames - Variable in class info.bioinfweb.treegraph.document.undo.file.ApplyNameTableEdit
 
oldNames - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog
 
oldRoot - Variable in class info.bioinfweb.treegraph.document.undo.ComplexDocumentEdit
 
oldRoot - Variable in class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit
 
oldScale - Variable in class info.bioinfweb.treegraph.document.undo.format.ScaleBranchLengthsEdit
 
oldTreeValues - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesBackup
 
oldValues - Variable in class info.bioinfweb.treegraph.document.undo.format.DistanceValuesByNodeBranchDataEdit
 
oldValues - Variable in class info.bioinfweb.treegraph.document.undo.format.ScaleDistanceValuesEdit
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.DocumentAction
Subclasses should implement this method instead of overriding DocumentAction.actionPerformed(ActionEvent).
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CollapseNodeAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CopyAllLabelsAction
This Method must not be called if the selected element is not a branch.
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CopyElementAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.CutAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.DeleteColumnAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.DeleteElementAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.DeleteSubelementsAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.LadderizeAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeDownAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.MoveSubtreeUpAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.NewLegendAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.NewNodeAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.PasteAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.RedoAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.RedoToAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.RerootAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SearchTextAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SeparateBranchAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.SetColumnTypeAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.UndoAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.edit.UndoToAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.EditDialogAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.CloseAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExitAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.ExportToPDFAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.ImportTableAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.NewDocumentAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.SaveAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.file.SaveAsAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.format.AutoPositionLabelsAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.format.ReanchorLegendAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.format.ShowHideScaleBarAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.format.ShowRootedAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.select.AbstractSelectionAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.ChangePainterIDAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.view.SetZoomAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.window.NextDocumentAction
 
onActionPerformed(ActionEvent, TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.actions.window.PreviousDocumentAction
 
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
 
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
 
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
 
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog
This method is called in the implementation of apply if an valid file was selected.
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
 
onApply(File) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
 
oneElementSelected(TreeSelection) - Static method in class info.bioinfweb.treegraph.gui.actions.DocumentAction
Tests if exactly one element (not none and not more) is contained in the given selection.
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.ChangeIDDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditPieChartLabelsDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewGraphicalLabelsDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewPieChartLabelsDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.NewTextLabelDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ApplyNameTableDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.ImportTableDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CopyColumnDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.IntervalDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RenameIDDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.ScaleBranchLengthsDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.SearchTextDialog
 
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog
Subclasses should implement SpecialFormatsDialog.customizeTarget() instead of overriding this method.
onExecute() - Method in class info.bioinfweb.treegraph.gui.dialogs.specialformats.SpecialFormatsDialog
Subclasses should implement SpecialFormatsDialog.customizeTarget() instead of overriding this method.
OpenAction - Class in info.bioinfweb.treegraph.gui.actions.file
 
OpenAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.OpenAction
 
OpenDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
 
OpenDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog
 
openInitialFile() - Method in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
 
openRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
 
OperatorMap - Class in info.bioinfweb.treegraph.document.format.operate
 
OperatorMap() - Constructor for class info.bioinfweb.treegraph.document.format.operate.OperatorMap
 
operators - Variable in class info.bioinfweb.treegraph.document.format.operate.OperatorMap
 
operators - Variable in class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit
 
OperatorsEdit - Class in info.bioinfweb.treegraph.document.undo.format
This edit changes applies the specified formats to the specified document elements.
OperatorsEdit(Document, PaintableElement[], FormatOperator[]) - Constructor for class info.bioinfweb.treegraph.document.undo.format.OperatorsEdit
 
option - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.FileDialog
 
ORIENT_DOWN - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
 
ORIENT_HORIZONTAL - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
 
ORIENT_UP - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants
 
orientation - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats
 
orientation - Variable in class info.bioinfweb.treegraph.document.format.operate.TextOrientationOperator
 
orientation - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel
 
orientation - Variable in class info.bioinfweb.treegraph.gui.treeframe.ruler.TreeViewRuler
 
orientationGroup - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
 
orientationMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel
 
otherLineFormatsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LinePanel
 
outerPreferencesPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
 
owner - Variable in class info.bioinfweb.treegraph.document.format.LabelFormats
 
owner - Variable in class info.bioinfweb.treegraph.document.format.LegendFormats
 
owner - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertRemoveLabelEdit
 
owner - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarIntervalKeyListener
 
owner - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleBarPanel
 
owner - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeEditlInputListener
 
owner - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
 
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