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TreeGraph 2
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E

EDGE_RADIUS_FACTOR - Static variable in class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.RoundRectangleIcon
 
edit - Variable in class info.bioinfweb.treegraph.gui.actions.edit.UndoRedoToAction
 
EditBranchLengthAction - Class in info.bioinfweb.treegraph.gui.actions.edit
 
EditBranchLengthAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditBranchLengthAction
 
EditBranchLengthDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement
Dialog used to edit a branch length in a TreeGraph 2 document.
EditBranchLengthDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditBranchLengthDialog
 
EditDialog - Class in info.bioinfweb.treegraph.gui.dialogs
Abstract class implementing basic functionality for dialogs used to edit a TreeGraph 2 document.
EditDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.EditDialog
 
EditDialog(Dialog) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.EditDialog
 
EditDialogAction - Class in info.bioinfweb.treegraph.gui.actions
Superclass for all actions that display a dialog.
EditDialogAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.EditDialogAction
 
EditElementFormatsAction - Class in info.bioinfweb.treegraph.gui.actions.format
 
EditElementFormatsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.EditElementFormatsAction
 
editFormatsGBC - Variable in class info.bioinfweb.treegraph.gui.mainframe.ToolBarPanel
 
EditGlobalFormatsAction - Class in info.bioinfweb.treegraph.gui.actions.format
 
EditGlobalFormatsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.format.EditGlobalFormatsAction
 
editLegends() - Method in class info.bioinfweb.treegraph.document.undo.edit.CollapseNodeEdit
 
editMenu - Variable in class info.bioinfweb.treegraph.gui.mainframe.MainFrame
 
EditNodeBranchDataEdit - Class in info.bioinfweb.treegraph.document.undo.edit
 
EditNodeBranchDataEdit(Document, Node) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.EditNodeBranchDataEdit
 
EditPieChartLabelIDsAction - Class in info.bioinfweb.treegraph.gui.actions.edit
 
EditPieChartLabelIDsAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditPieChartLabelIDsAction
 
EditPieChartLabelsDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement
 
EditPieChartLabelsDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditPieChartLabelsDialog
 
edits - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
 
edits - Variable in class info.bioinfweb.treegraph.document.undo.edit.InsertLabelsEdit
 
editSubtreeLegends(Node) - Method in class info.bioinfweb.treegraph.document.undo.SaveLegendsEdit
This method can be used to adopt the legends of a document prior to deleting a subtree.
EditTextElementAction - Class in info.bioinfweb.treegraph.gui.actions.edit
 
EditTextElementAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.edit.EditTextElementAction
 
EditTextElementDialog - Class in info.bioinfweb.treegraph.gui.dialogs.editelement
Dialog used to edit a text element.
EditTextElementDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.editelement.EditTextElementDialog
 
editUndoRedoMenus() - Method in class info.bioinfweb.treegraph.gui.actions.ActionManagement
Sets the contents undo and redo menu or disables them.
element - Variable in class info.bioinfweb.treegraph.document.undo.edit.TextElementEdit
 
ELEMENT_SEPERATOR - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringChars
 
elementCount(Class<? extends PaintableElement>) - Method in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
Returns the number of all selected elements of the specified type.
ElementFormats - Interface in info.bioinfweb.treegraph.document.format
This interface should be implemented by all classes the represent formats of a PaintableElement.
ElementFormatsDialog - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats
Dialog used to edit the element formats of a document element.
ElementFormatsDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.ElementFormatsDialog
 
ElementFormatTab - Interface in info.bioinfweb.treegraph.gui.dialogs.elementformats
Classes that implement single tabs of the ElementFormatsDialog must implement this interface.
elements - Variable in class info.bioinfweb.treegraph.document.undo.edit.DeleteEdit
 
elements - Variable in class info.bioinfweb.treegraph.gui.treeframe.TreeSelection
 
elementSet - Variable in class info.bioinfweb.treegraph.document.Tree
 
elementToPosition(Document, float, float, float) - Method in class info.bioinfweb.treegraph.graphics.positionpaint.RectangularCladogramPositioner
Determines the element to a position defined by x- and y-coordinates (e.g. to select an element by mouse).
elementToPosition(Document, float, float, float) - Method in interface info.bioinfweb.treegraph.graphics.positionpaint.TreePositioner
Return the SelectableElement of the tree in which the given coordinates are located.
EllipseIcon - Class in info.bioinfweb.treegraph.graphics.positionpaint.labelicons
 
EllipseIcon() - Constructor for class info.bioinfweb.treegraph.graphics.positionpaint.labelicons.EllipseIcon
 
EMFFactory - Class in info.bioinfweb.treegraph.graphics.export.emf
 
EMFFactory() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFFactory
 
EMFFilter - Class in info.bioinfweb.treegraph.graphics.export.emf
 
EMFFilter() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter
 
EMFWriter - Class in info.bioinfweb.treegraph.graphics.export.emf
 
EMFWriter() - Constructor for class info.bioinfweb.treegraph.graphics.export.emf.EMFWriter
 
EMPTY_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
 
ENCLOSED_NAME_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser
 
encloseSubnodes(Node, boolean) - Static method in class info.bioinfweb.treegraph.document.NodeLadderizeComparable
Encloses all direct subelements of root with a NodeLadderizeComparable- object and adds this objects to an array that is returned.
endRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog
 
ensureContrast(Document, Node, Legend[]) - Method in class info.bioinfweb.treegraph.document.ContrastManager
Checks the colors of all elements in the subtree under root (including root and its afferent branch) regarding to their contrast to the background color of the document.
ensureContrast(Document, Label) - Method in class info.bioinfweb.treegraph.document.ContrastManager
Checks the text color of the specified label regarding to its contrast to the background color of the document.
ensureContrast(Document, Label[]) - Method in class info.bioinfweb.treegraph.document.ContrastManager
Checks the text color of the specified labels regarding to their contrast to the background color of the document.
ensureContrast(Document, Legend) - Method in class info.bioinfweb.treegraph.document.ContrastManager
Checks the text color of the specified legend regarding to its contrast to the background color of the document.
ensureLabelBlock(Labels, boolean, Color, Color) - Method in class info.bioinfweb.treegraph.document.ContrastManager
 
ensureLabelContrast(Document, Label) - Method in class info.bioinfweb.treegraph.document.ContrastManager
Internal method which does not set state = State.UNDEFINED.
ensureLegendContrast(Document, Legend) - Method in class info.bioinfweb.treegraph.document.ContrastManager
 
ensureSubtreeContrast(Document, Node) - Method in class info.bioinfweb.treegraph.document.ContrastManager
Rekursive method which contains the actual implementation.
entries - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatsTableModel
 
entrySet() - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
 
equals(Object) - Method in class info.bioinfweb.treegraph.document.format.DistanceDimension
 
equals(Object) - Method in class info.bioinfweb.treegraph.document.format.DistanceValue
 
equals(Object) - Method in class info.bioinfweb.treegraph.document.format.Margin
 
equals(Object) - Method in class info.bioinfweb.treegraph.document.HiddenDataMap
 
equals(Object) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.AbstractIDElementAdapter
Returns true if the specified object is an instance of the same class and has the same ID.
equals(Object) - Method in class info.bioinfweb.treegraph.document.nodebranchdata.AbstractNodeBranchDataAdapter
Returns true if the specified object is an instance of the same class.
equals(Object) - Method in class info.bioinfweb.treegraph.document.TextElementData
 
equals(Object) - Method in class info.bioinfweb.treegraph.document.undo.file.addsupportvalues.LeafField
 
error - Variable in exception info.bioinfweb.treegraph.document.io.nexus.NexusException
 
ERROR_URL - Static variable in class info.bioinfweb.treegraph.Main
 
errorHelpCode - Variable in class info.bioinfweb.treegraph.gui.dialogs.specialformats.FormatsByNodeBranchDataDialog
 
errorReporter - Variable in class info.bioinfweb.treegraph.Main
 
errors - Variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
 
evaluate() - Method in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
Evaluates the expression of this instance.
evaluationStep(Object) - Method in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
Evaluates the expression with one set of variable values.
examplePanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.DecimalFormatPanel
 
execute(Document, TreeSelection, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.EditDialog
 
execute() - Method in class info.bioinfweb.treegraph.gui.dialogs.editelement.AbstractTextElementDialog
 
execute(int, Tree) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.AssignImportColumnsDialog
 
execute(Document, TreeSelection, NodeBranchDataAdapter) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
This method throws a Runtime exception if it is called.
execute(TreeInternalFrame) - Method in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
This method should be called instead of ExportToGraphicDialog#execute(Document, TreeSelection).
executeEdit(DocumentEdit) - Method in class info.bioinfweb.treegraph.document.Document
 
ExitAction - Class in info.bioinfweb.treegraph.gui.actions.file
 
ExitAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExitAction
 
EXPORT_FILE_EXT - Static variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
 
ExportNodeDataTableModel - Class in info.bioinfweb.treegraph.gui.dialogs.io
 
ExportNodeDataTableModel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel
 
ExportNodeDataTableModel.Nodes - Enum in info.bioinfweb.treegraph.gui.dialogs.io
 
ExportNodeDataTableModel.Nodes() - Constructor for enum info.bioinfweb.treegraph.gui.dialogs.io.ExportNodeDataTableModel.Nodes
 
ExportTableAction - Class in info.bioinfweb.treegraph.gui.actions.file
 
ExportTableAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportTableAction
 
ExportTableDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
 
ExportTableDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog
 
ExportToGraphicAction - Class in info.bioinfweb.treegraph.gui.actions.file
 
ExportToGraphicAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToGraphicAction
 
ExportToGraphicDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic
 
ExportToGraphicDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.ExportToGraphicDialog
 
ExportToNewickNexusAction - Class in info.bioinfweb.treegraph.gui.actions.file
 
ExportToNewickNexusAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToNewickNexusAction
 
ExportToNewickStringDialog - Class in info.bioinfweb.treegraph.gui.dialogs.io
 
ExportToNewickStringDialog(Frame) - Constructor for class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog
 
ExportToPDFAction - Class in info.bioinfweb.treegraph.gui.actions.file
 
ExportToPDFAction(MainFrame) - Constructor for class info.bioinfweb.treegraph.gui.actions.file.ExportToPDFAction
 
expression - Variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit
 
expressionPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog
 
expressions - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.RecentlyUsedExpressionsListModel
 
expressionTextField - Variable in class info.bioinfweb.treegraph.gui.dialogs.nodebranchdata.CalculateColumnDialog
 
EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.tgf.TGFFilter
 
EXTENSION - Static variable in class info.bioinfweb.treegraph.document.io.xtg.XTGFilter
 
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.emf.EMFFilter
 
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.jpeg.JPEGFilter
 
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.pdf.PDFFilter
 
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.png.PNGFilter
 
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.svg.SVGFilter
 
EXTENSION - Static variable in class info.bioinfweb.treegraph.graphics.export.tiff.TIFFFilter
 
EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickFilter
 
EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusFilter
 
EXTENSIONS - Static variable in class info.bioinfweb.treegraph.document.io.SupportedFormatsFilter
 
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