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B

backgroundColor - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

backup - Variable in class info.bioinfweb.treegraph.document.undo.NodeBranchDataEdit

backupFormats() - Method in class info.bioinfweb.treegraph.document.undo.format.AutoPositionLabelsEdit

backups - Variable in class info.bioinfweb.treegraph.document.undo.file.ImportTableEdit

backupSubtree(Node) - Method in class info.bioinfweb.treegraph.document.undo.NodeBranchDataBackup

batikLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

beginningRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.ReplaceInNodeDataDialog

belowRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LabelPanel

bestQualityLabel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.exporttographic.JPEGPrefPanel

BG_COLOR - Static variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.IconPreviewPanel

BLOCK_BEGIN_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

BLOCK_END_PATTERN - Static variable in class info.bioinfweb.treegraph.document.io.nexus.NexusParser

blueFactor - Variable in class info.bioinfweb.treegraph.document.undo.format.ColorsByNodeBranchDataEdit

BOLD - Static variable in interface info.bioinfweb.treegraph.document.format.TextFormats

boldCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

boldMonitor - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.FontFormatsPanel

bothRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportTableDialog

bottom - Variable in class info.bioinfweb.treegraph.document.format.Margin

bottom - Variable in class info.bioinfweb.treegraph.gui.dialogs.MarginInput

braceRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

bracketRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.LegendPanel

Branch - Class in info.bioinfweb.treegraph.document

The entity for a branch.

Branch(Node) - Constructor for class info.bioinfweb.treegraph.document.Branch

branch - Variable in class info.bioinfweb.treegraph.document.undo.edit.BranchLengthEdit

branch - Variable in class info.bioinfweb.treegraph.document.undo.edit.PasteAllLabelsEdit

branch - Variable in class info.bioinfweb.treegraph.document.undo.edit.PasteLabelEdit

branch - Variable in class info.bioinfweb.treegraph.document.undo.edit.SeparateBranchEdit

BRANCH_LENGTH_ADAPTER - Static variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

BRANCH_LENGTH_UNITS - Static variable in interface info.bioinfweb.treegraph.document.io.xtg.XTGConstants

BRANCH_LENGTH_VAR - Static variable in class info.bioinfweb.treegraph.document.undo.edit.CalculateColumnEdit

BRANCH_WIDT_DATA_NAME - Static variable in interface info.bioinfweb.treegraph.document.io.phyloxml.PhyloXMLConstants

branchDataRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

branches - Variable in class info.bioinfweb.treegraph.document.undo.format.AutoPositionLabelsEdit

BranchFormats - Class in info.bioinfweb.treegraph.document.format

BranchFormats() - Constructor for class info.bioinfweb.treegraph.document.format.BranchFormats

BranchLengthAdapter - Class in info.bioinfweb.treegraph.document.nodebranchdata

BranchLengthAdapter() - Constructor for class info.bioinfweb.treegraph.document.nodebranchdata.BranchLengthAdapter

branchLengthCheckBox - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

BranchLengthEdit - Class in info.bioinfweb.treegraph.document.undo.edit

BranchLengthEdit(Document, Branch, double) - Constructor for class info.bioinfweb.treegraph.document.undo.edit.BranchLengthEdit

branchLengthInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.ExportToNewickStringDialog

branchLengthsAdapter - Variable in class info.bioinfweb.treegraph.document.io.newick.NewickStringReader

branchLengthScale - Variable in class info.bioinfweb.treegraph.document.format.GlobalFormats

branchLengthScale - Variable in class info.bioinfweb.treegraph.gui.dialogs.elementformats.ScaleValueInput

branchLengthScaleInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.GlobalFormatsDialog

branchLengthsDataInput - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

branchLengthsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.OpenDialog

branchLengthsRadioButton - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.AddSupportValuesDialog

BranchLengthsScaler - Class in info.bioinfweb.treegraph.document.io.newick

Sets the branch lengths scale of a tree so that the contained branched have a specific average length.

BranchLengthsScaler() - Constructor for class info.bioinfweb.treegraph.document.io.newick.BranchLengthsScaler

branchLengthToDistance(float, float) - Static method in class info.bioinfweb.treegraph.document.format.ScaleValue

BranchLineColorAdapter - Class in info.bioinfweb.treegraph.document.format.adapters.color

BranchLineColorAdapter() - Constructor for class info.bioinfweb.treegraph.document.format.adapters.color.BranchLineColorAdapter

BranchLineWidthAdapter - Class in info.bioinfweb.treegraph.document.format.adapters.distance

BranchLineWidthAdapter() - Constructor for class info.bioinfweb.treegraph.document.format.adapters.distance.BranchLineWidthAdapter

BranchMinLengthAdapter - Class in info.bioinfweb.treegraph.document.format.adapters.distance

BranchMinLengthAdapter() - Constructor for class info.bioinfweb.treegraph.document.format.adapters.distance.BranchMinLengthAdapter

BranchPanel - Class in info.bioinfweb.treegraph.gui.dialogs.elementformats

Panel of the ElementFormatsDialog used to edit the branch formats.

BranchPanel() - Constructor for class info.bioinfweb.treegraph.gui.dialogs.elementformats.BranchPanel

This is the default constructor

BranchSpaceAboveAdapter - Class in info.bioinfweb.treegraph.document.format.adapters.distance

BranchSpaceAboveAdapter() - Constructor for class info.bioinfweb.treegraph.document.format.adapters.distance.BranchSpaceAboveAdapter

BranchSpaceBelowAdapter - Class in info.bioinfweb.treegraph.document.format.adapters.distance

BranchSpaceBelowAdapter() - Constructor for class info.bioinfweb.treegraph.document.format.adapters.distance.BranchSpaceBelowAdapter

buttonPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.AboutDialog

buttonsPanel - Variable in class info.bioinfweb.treegraph.gui.dialogs.io.loadlogger.LoadLoggerDialog