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| PREV NEXT | FRAMES NO FRAMES | |||||||||
| Packages that use NodeBranchDataAdapter | |
|---|---|
| info.bioinfweb.treegraph.document |
Contains the classes that represent the data structure of TreeGraph 2 (document elements and
formats) as well as all edit operations in the undo-package to manipulate the data
structure and classes to read and write a document from and to different formats (io-
subpackage). |
| info.bioinfweb.treegraph.document.io | Contains classes necessary to read and write the data structure of a TreeGraph 2 document from and to different formats. |
| info.bioinfweb.treegraph.document.io.newick | Contains classes implementing the import from and export to the Newick format. |
| info.bioinfweb.treegraph.document.io.nexus | Contains classes implementing the import from and export to the Nexus format. |
| info.bioinfweb.treegraph.document.io.phyloxml | Contains classes implementing the import from the phyloXML format. |
| info.bioinfweb.treegraph.document.io.tgf | The classes in this package were planned to allow the import of TGF files into TreeGraph 2. |
| info.bioinfweb.treegraph.document.io.xtg | Contains classes implementing reading and writing of TreeGraph 2 documents. |
| info.bioinfweb.treegraph.document.nodebranchdata |
Contains classes that implement the access to different data fields of the document elements over the common
interface NodeBranchDataAdapter. |
| info.bioinfweb.treegraph.document.undo | Contains all document edits to manipulate the TreeGraph 2 data structure. |
| info.bioinfweb.treegraph.document.undo.edit | |
| info.bioinfweb.treegraph.document.undo.edit.calculatecolumn | |
| info.bioinfweb.treegraph.document.undo.file | |
| info.bioinfweb.treegraph.document.undo.format | |
| info.bioinfweb.treegraph.gui.actions | Contains the actions classes used in the TreeGraph 2 GUI. |
| info.bioinfweb.treegraph.gui.actions.edit | |
| info.bioinfweb.treegraph.gui.actions.file | |
| info.bioinfweb.treegraph.gui.actions.format | |
| info.bioinfweb.treegraph.gui.actions.select | |
| info.bioinfweb.treegraph.gui.actions.view | |
| info.bioinfweb.treegraph.gui.actions.window | |
| info.bioinfweb.treegraph.gui.dialogs | Contains dialogs of the TreeGraph 2 GUI. |
| info.bioinfweb.treegraph.gui.dialogs.io | |
| info.bioinfweb.treegraph.gui.dialogs.io.exporttographic | |
| info.bioinfweb.treegraph.gui.dialogs.nodebranchdata | |
| info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput | |
| info.bioinfweb.treegraph.gui.treeframe | Contains all classes that make up a document window. |
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document |
|---|
| Methods in info.bioinfweb.treegraph.document with parameters of type NodeBranchDataAdapter | |
|---|---|
boolean |
Tree.containsDecimal(NodeBranchDataAdapter adapter)
Tests if the tree contains a node which would be able to return a decimal value to the given adapter. |
static boolean |
Tree.containsDecimal(NodeBranchDataAdapter adapter,
Node root)
Tests if the subtree under root contains a node which would be
able to return a decimal value to the given adapter. |
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io |
|---|
| Methods in info.bioinfweb.treegraph.document.io with parameters of type NodeBranchDataAdapter | |
|---|---|
Document |
DocumentReader.read(File file,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter)
|
Document |
AbstractDocumentReader.read(File file,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter)
|
Document |
DocumentReader.read(File file,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternalNodes)
|
Document |
AbstractDocumentReader.read(File file,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternalNodes)
If you want to implement file specific functionalities you should override this method. |
Document |
DocumentReader.read(InputStream stream,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter)
|
Document |
AbstractDocumentReader.read(InputStream stream,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter)
|
Document |
DocumentReader.read(InputStream stream,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternalNodes)
|
void |
DocumentWriter.write(Document document,
File file,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter leafAdapter,
NodeBranchDataAdapter branchLengthAdapter)
|
void |
AbstractDocumentWriter.write(Document document,
File file,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter leafAdapter,
NodeBranchDataAdapter branchLengthAdapter)
|
void |
DocumentWriter.write(Document document,
OutputStream stream,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter leafAdapter,
NodeBranchDataAdapter branchLengthAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.newick |
|---|
| Fields in info.bioinfweb.treegraph.document.io.newick declared as NodeBranchDataAdapter | |
|---|---|
private NodeBranchDataAdapter |
NewickStringReader.branchLengthsAdapter
|
private NodeBranchDataAdapter |
NewickStringReader.internalAdapter
|
| Methods in info.bioinfweb.treegraph.document.io.newick with parameters of type NodeBranchDataAdapter | |
|---|---|
private static String |
NewickStringWriter.formatName(Node node,
NodeBranchDataAdapter adapter)
|
Document |
NewickReader.read(File file,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternals)
|
Document |
NewickReader.read(InputStream stream,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternals)
|
static Tree[] |
NewickStringReader.read(String[] newick,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TranslTable translTable,
boolean translateInternals)
|
Tree |
NewickStringReader.read(String newick,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter)
|
Tree |
NewickStringReader.read(String newick,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TranslTable translTable,
boolean translateInternals)
|
private void |
NewickStringReader.readName(int previousEnd,
int end,
Node root,
NodeBranchDataAdapter adapter,
TranslTable translTable)
|
void |
NewickWriter.write(Document document,
OutputStream stream,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter leafAdapter,
NodeBranchDataAdapter branchLengthAdapter)
|
static String |
NewickStringWriter.write(Tree tree,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter leafAdapter,
NodeBranchDataAdapter branchLengthAdapter)
|
private static String |
NewickStringWriter.writeSubtree(Node root,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter leafAdapter,
NodeBranchDataAdapter branchLengthAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.nexus |
|---|
| Methods in info.bioinfweb.treegraph.document.io.nexus with parameters of type NodeBranchDataAdapter | |
|---|---|
Tree[] |
NexusDocument.createTrees(NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
boolean translateInternals)
Creates a Tree object from each stored Newick string. |
Document |
NexusReader.read(File file,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthAdapter,
TreeSelector selector,
boolean translateInternalNodes)
|
Document |
NexusReader.read(InputStream stream,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthAdapter,
TreeSelector selector,
boolean translateInternalNodes)
|
void |
NexusWriter.write(Document document,
OutputStream stream,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter leafAdapter,
NodeBranchDataAdapter branchLengthAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.phyloxml |
|---|
| Methods in info.bioinfweb.treegraph.document.io.phyloxml with parameters of type NodeBranchDataAdapter | |
|---|---|
Document |
PhyloXMLReader.read(InputStream stream,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternalNodes)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.tgf |
|---|
| Methods in info.bioinfweb.treegraph.document.io.tgf with parameters of type NodeBranchDataAdapter | |
|---|---|
Document |
TGFReader.read(InputStream stream,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternalNodes)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.io.xtg |
|---|
| Methods in info.bioinfweb.treegraph.document.io.xtg with parameters of type NodeBranchDataAdapter | |
|---|---|
Document |
XTGReader.read(File file,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternalNodes)
|
Document |
XTGReader.read(InputStream stream,
LoadLogger loadLogger,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter branchLengthsAdapter,
TreeSelector selector,
boolean translateInternalNodes)
|
void |
XTGWriter.write(Document document,
OutputStream stream,
NodeBranchDataAdapter internalAdapter,
NodeBranchDataAdapter leafAdapter,
NodeBranchDataAdapter branchLengthAdapter)
A call of this method is identical with calling XTGWriter.write(info.bioinfweb.treegraph.document.Document, java.io.OutputStream)
because the XTG format supports writing any number of labels by default and there
is no need to replace internal node names by label values. |
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.nodebranchdata |
|---|
| Subinterfaces of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.nodebranchdata | |
|---|---|
interface |
IDElementAdapter
This interface should be implemented by all node data adapters that store an ID. |
interface |
NewNodeDataAdapter
This interface should be implemented by all node data adapters that create a new node data column (e.g. a new group of labels). |
| Classes in info.bioinfweb.treegraph.document.nodebranchdata that implement NodeBranchDataAdapter | |
|---|---|
class |
AbstractIDElementAdapter
Node data adapters that need to store an ID can be inherited from this abstract class. |
class |
AbstractNodeBranchDataAdapter
Implements a basic equals()-method for all node/branch data adapters. |
class |
BranchLengthAdapter
|
class |
HiddenBranchDataAdapter
|
class |
HiddenDataAdapter
|
class |
HiddenNodeDataAdapter
|
class |
NewHiddenBranchDataAdapter
Creates a new hidden branch data column. |
class |
NewHiddenNodeDataAdapter
Creates a new hidden node data column. |
class |
NewTextLabelAdapter
Creates a new group of labels. |
class |
NodeNameAdapter
|
class |
TextElementDataAdapter
This abstract class implements basic funktionalities for adapters that deal with data stored in a TextElementData-object. |
class |
TextLabelAdapter
|
class |
UniqueNameAdapter
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo |
|---|
| Fields in info.bioinfweb.treegraph.document.undo declared as NodeBranchDataAdapter | |
|---|---|
protected NodeBranchDataAdapter |
NodeBranchDataEdit.adapter
|
private NodeBranchDataAdapter |
NodeBranchDataBackup.adapter
|
| Constructors in info.bioinfweb.treegraph.document.undo with parameters of type NodeBranchDataAdapter | |
|---|---|
NodeBranchDataBackup(NodeBranchDataAdapter adapter,
Node root)
|
|
NodeBranchDataEdit(Document document,
NodeBranchDataAdapter adapter)
|
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.edit |
|---|
| Fields in info.bioinfweb.treegraph.document.undo.edit declared as NodeBranchDataAdapter | |
|---|---|
private NodeBranchDataAdapter |
RescaleNodeDataEdit.adapter
|
private NodeBranchDataAdapter |
ReplaceInNodeDataEdit.adapter
|
private NodeBranchDataAdapter |
CopyColumnEdit.source
|
| Fields in info.bioinfweb.treegraph.document.undo.edit with type parameters of type NodeBranchDataAdapter | |
|---|---|
private Map<String,NodeBranchDataAdapter> |
CalculateColumnEdit.adapterMap
|
| Methods in info.bioinfweb.treegraph.document.undo.edit that return types with arguments of type NodeBranchDataAdapter | |
|---|---|
private HashMap<String,NodeBranchDataAdapter> |
CalculateColumnEdit.createAdapterMap()
|
| Methods in info.bioinfweb.treegraph.document.undo.edit with parameters of type NodeBranchDataAdapter | |
|---|---|
static void |
DeleteColumnEdit.deleteSubtree(Node root,
NodeBranchDataAdapter adapter)
|
private Object |
CalculateColumnEdit.getCurrentValue(NodeBranchDataAdapter adapter)
Returns the value of the specified column in the current line (specified by CalculateColumnEdit.position). |
| Constructors in info.bioinfweb.treegraph.document.undo.edit with parameters of type NodeBranchDataAdapter | |
|---|---|
CalculateColumnEdit(Document document,
NodeBranchDataAdapter targetAdapter,
String expression)
|
|
CopyColumnEdit(Document document,
NodeBranchDataAdapter source,
NodeBranchDataAdapter dest,
boolean includeLeafs)
|
|
DeleteColumnEdit(Document document,
NodeBranchDataAdapter adapter)
|
|
DeleteOutsideIntervalEdit(Document document,
NodeBranchDataAdapter adapter,
double lowerBorder,
double upperBorder)
|
|
ReplaceInNodeDataEdit(Document document,
NodeBranchDataAdapter adapter,
ReplaceInNodeDataEdit.InsertPosition position,
String oldText,
String newText,
boolean caseSensitive,
boolean wordsOnly)
|
|
RescaleNodeDataEdit(Document document,
NodeBranchDataAdapter adapter,
double factor,
double addend)
|
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.edit.calculatecolumn |
|---|
| Methods in info.bioinfweb.treegraph.document.undo.edit.calculatecolumn with parameters of type NodeBranchDataAdapter | |
|---|---|
abstract Object |
IDFunction.getValue(NodeBranchDataAdapter id)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.file |
|---|
| Fields in info.bioinfweb.treegraph.document.undo.file declared as NodeBranchDataAdapter | |
|---|---|
private NodeBranchDataAdapter |
ApplyNameTableEdit.adapter
|
private NodeBranchDataAdapter[] |
ImportTableEdit.adapters
|
private NodeBranchDataAdapter |
AddSupportValuesEdit.sourceAdapter
The node/branch data to be imported (node names or branch lengths) |
| Methods in info.bioinfweb.treegraph.document.undo.file with parameters of type NodeBranchDataAdapter | |
|---|---|
boolean |
ImportTableEdit.importData(NodeBranchDataAdapter[] adapters,
String[][] data)
|
private static boolean |
AddSupportValuesEdit.internalsAreDecimal(Node root,
NodeBranchDataAdapter adapter)
Tests if all internal nodes in the subtree under root contain
decimal values. |
| Constructors in info.bioinfweb.treegraph.document.undo.file with parameters of type NodeBranchDataAdapter | |
|---|---|
AddSupportValuesEdit(Document document,
Document src,
TextElementDataAdapter terminalsAdapter,
AddSupportValuesEdit.TargetType targetType,
String idPrefix,
NodeBranchDataAdapter sourceAdapter,
boolean processRooted)
|
|
ApplyNameTableEdit(Document document,
NodeBranchDataAdapter adapter,
List<String> oldNames,
List<String> newNames,
boolean ignoreWhitespaces,
boolean caseSensitive,
boolean parseNumericValues)
|
|
ImportTableEdit(Document document,
String[][] data,
NodeBranchDataAdapter[] adapters)
|
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.document.undo.format |
|---|
| Fields in info.bioinfweb.treegraph.document.undo.format declared as NodeBranchDataAdapter | |
|---|---|
private NodeBranchDataAdapter |
DistanceValuesByNodeBranchDataEdit.sourceAdapter
|
private NodeBranchDataAdapter |
ColorsByNodeBranchDataEdit.sourceAdapter
|
| Methods in info.bioinfweb.treegraph.document.undo.format with parameters of type NodeBranchDataAdapter | |
|---|---|
static double |
NodeBranchDataFormatEdit.calculateMaxNodeData(NodeBranchDataAdapter adapter,
Node root)
Searches for the maximal node data specified by adapter in the
subtree under root. |
| Constructors in info.bioinfweb.treegraph.document.undo.format with parameters of type NodeBranchDataAdapter | |
|---|---|
ColorsByNodeBranchDataEdit(Document document,
NodeBranchDataAdapter sourceAdapter,
Color min,
Color max,
boolean changeUndefined,
boolean inheritToTerminals,
ColorAdapter[] targetAdapters)
|
|
DistanceValuesByNodeBranchDataEdit(Document document,
NodeBranchDataAdapter sourceAdapter,
float min,
float max,
boolean changeUndefined,
boolean inheritToTerminals,
DistanceAdapter[] targetAdapters)
|
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions |
|---|
| Methods in info.bioinfweb.treegraph.gui.actions with parameters of type NodeBranchDataAdapter | |
|---|---|
private void |
ActionManagement.setActionStatusBySelection(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
abstract void |
DocumentAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.edit |
|---|
| Methods in info.bioinfweb.treegraph.gui.actions.edit with parameters of type NodeBranchDataAdapter | |
|---|---|
void |
UndoRedoToAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
UndoAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SetColumnTypeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SeparateBranchAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SearchTextAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
RerootAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ReplaceInNodeDataAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
RenameDataIDAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
RedoAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
PasteAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
NewTextLabelAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
NewPieChartLabelsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
NewNodeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
NewLegendAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
NewIconLabelsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
MoveSubtreeUpAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
MoveSubtreeDownAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
LadderizeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
EditTextElementAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
EditPieChartLabelIDsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
EditBranchLengthAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
DeleteSubelementsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
DeleteOutsideIntervalAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
DeleteElementAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
DeleteColumnAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
CopyElementAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
CopyColumnAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
CopyAllLabelsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
CollapseNodeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ChangeLabelIDAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
CalculateColumnAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.file |
|---|
| Methods in info.bioinfweb.treegraph.gui.actions.file with parameters of type NodeBranchDataAdapter | |
|---|---|
void |
SaveAsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SaveAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
OpenAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
NewDocumentAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ImportTableAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ExportToPDFAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ExportToNewickNexusAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ExportToGraphicAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ExportTableAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ExitAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
CloseAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ApplyNameTableAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
AddSupportValuesAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.format |
|---|
| Methods in info.bioinfweb.treegraph.gui.actions.format with parameters of type NodeBranchDataAdapter | |
|---|---|
void |
ShowRootedAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ShowHideScaleBarAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ScaleDistanceValuesAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ScaleBranchLengthsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ReanchorLegendAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
EditGlobalFormatsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
EditElementFormatsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
DistanceValuesByNodeBranchDataAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ColorsByNodeBranchDataAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
AutoPositionLabelsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.select |
|---|
| Methods in info.bioinfweb.treegraph.gui.actions.select with parameters of type NodeBranchDataAdapter | |
|---|---|
void |
SelectTypeInSubtreeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectTypeInDocumentAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectSubtreeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectLegendsWithPosIndexAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectLegendsInSubtreeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectLegendsAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectLeafsInSubtreeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectLeafsInDocumentAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectLabelsWithIDAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectLabelsInSubtreeAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
SelectAllAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
InvertSelectionAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.view |
|---|
| Methods in info.bioinfweb.treegraph.gui.actions.view with parameters of type NodeBranchDataAdapter | |
|---|---|
void |
SetZoomAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
ChangePainterIDAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.actions.window |
|---|
| Methods in info.bioinfweb.treegraph.gui.actions.window with parameters of type NodeBranchDataAdapter | |
|---|---|
void |
PreviousDocumentAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
void |
NextDocumentAction.setEnabled(Document document,
TreeSelection selection,
NodeBranchDataAdapter tableAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs |
|---|
| Fields in info.bioinfweb.treegraph.gui.dialogs declared as NodeBranchDataAdapter | |
|---|---|
private NodeBranchDataAdapter |
EditDialog.selectedAdapter
|
| Methods in info.bioinfweb.treegraph.gui.dialogs that return NodeBranchDataAdapter | |
|---|---|
protected NodeBranchDataAdapter |
EditDialog.getSelectedAdapter()
|
| Methods in info.bioinfweb.treegraph.gui.dialogs with parameters of type NodeBranchDataAdapter | |
|---|---|
boolean |
EditDialog.execute(Document document,
TreeSelection selection,
NodeBranchDataAdapter selectedAdapter)
|
protected void |
EditDialog.setSelectedAdapter(NodeBranchDataAdapter selectedAdapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.io |
|---|
| Fields in info.bioinfweb.treegraph.gui.dialogs.io with type parameters of type NodeBranchDataAdapter | |
|---|---|
private Vector<NodeBranchDataAdapter> |
ExportNodeDataTableModel.adapters
|
| Methods in info.bioinfweb.treegraph.gui.dialogs.io that return NodeBranchDataAdapter | |
|---|---|
NodeBranchDataAdapter[] |
AssignImportColumnsDialog.execute(int count,
Tree tree)
|
NodeBranchDataAdapter |
ExportNodeDataTableModel.get(int index)
|
NodeBranchDataAdapter |
ExportNodeDataTableModel.remove(int index)
|
NodeBranchDataAdapter |
ExportNodeDataTableModel.set(int index,
NodeBranchDataAdapter adapter)
|
| Methods in info.bioinfweb.treegraph.gui.dialogs.io with parameters of type NodeBranchDataAdapter | |
|---|---|
boolean |
ExportNodeDataTableModel.add(NodeBranchDataAdapter adapter)
|
private String |
ExportNodeDataTableModel.getValue(NodeBranchDataAdapter adapter,
Node node)
|
NodeBranchDataAdapter |
ExportNodeDataTableModel.set(int index,
NodeBranchDataAdapter adapter)
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic |
|---|
| Methods in info.bioinfweb.treegraph.gui.dialogs.io.exporttographic with parameters of type NodeBranchDataAdapter | |
|---|---|
boolean |
ExportToGraphicDialog.execute(Document document,
TreeSelection selection,
NodeBranchDataAdapter selectedAdapter)
This method throws a Runtime exception if it is called. |
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.nodebranchdata |
|---|
| Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdata that return NodeBranchDataAdapter | |
|---|---|
NodeBranchDataAdapter |
CopyColumnDialog.getDestAdapter()
|
NodeBranchDataAdapter |
CopyColumnDialog.getSrcAdapter()
|
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput |
|---|
| Fields in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput declared as NodeBranchDataAdapter | |
|---|---|
private NodeBranchDataAdapter |
NodeDataComboBoxModel.selected
|
| Fields in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with type parameters of type NodeBranchDataAdapter | |
|---|---|
private Vector<NodeBranchDataAdapter> |
NodeDataComboBoxModel.adapters
|
| Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput that return NodeBranchDataAdapter | |
|---|---|
NodeBranchDataAdapter |
NodeDataComboBoxModel.getElementAt(int pos)
|
NodeBranchDataAdapter |
NodeBranchDataInput.getSelectedAdapter()
Returns the currently selected adapter. |
NodeBranchDataAdapter |
NewNodeBranchDataInput.getSelectedAdapter()
|
NodeBranchDataAdapter |
NodeDataComboBoxModel.getSelectedItem()
|
| Methods in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with parameters of type NodeBranchDataAdapter | |
|---|---|
boolean |
NodeDataComboBoxModel.setSelectedAdapter(NodeBranchDataAdapter adapter)
Selects the adapter which is an instance (not instance of a subclass) of same class as the given adapter and has the same ID (if it is an adapter for ID elements). |
boolean |
NodeBranchDataInput.setSelectedAdapter(NodeBranchDataAdapter adapter)
Selects the adapter which is an instance (not instance of a subclass) of same class as the given adapter and has the same ID (if it is an adapter for ID elements). |
| Method parameters in info.bioinfweb.treegraph.gui.dialogs.nodebranchdatainput with type arguments of type NodeBranchDataAdapter | |
|---|---|
boolean |
NodeDataComboBoxModel.setSelectedAdapter(Class<? extends NodeBranchDataAdapter> adapterClass)
Selects the adapter which is an instance (not instance of a subclass) of the given class. |
boolean |
NodeBranchDataInput.setSelectedAdapter(Class<? extends NodeBranchDataAdapter> adapterClass)
Selects the adapter which is an instance (not instance of a subclass) of the given class. |
| Uses of NodeBranchDataAdapter in info.bioinfweb.treegraph.gui.treeframe |
|---|
| Fields in info.bioinfweb.treegraph.gui.treeframe with type parameters of type NodeBranchDataAdapter | |
|---|---|
private Vector<NodeBranchDataAdapter> |
DocumentTableModel.adapters
|
| Methods in info.bioinfweb.treegraph.gui.treeframe that return NodeBranchDataAdapter | |
|---|---|
NodeBranchDataAdapter |
DocumentTableModel.getAdapter(int col)
|
NodeBranchDataAdapter |
TreeInternalFrame.getSelectedAdapter()
Returns the selected adapter in the node/branch data table. |
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